data_6OOL # _model_server_result.job_id p6HXJqa-Nehr1YXSEmVssQ _model_server_result.datetime_utc '2024-11-12 20:50:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ool # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":514}' # _entry.id 6OOL # _exptl.entry_id 6OOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OOL _cell.length_a 56.051 _cell.length_b 76.89 _cell.length_c 159.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 503 NAG 2 n B NAG 2 B 2 NAG A 504 NAG 2 n B FUC 3 B 3 FUC A 604 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 45 A CYS 69 1_555 A SG CYS 106 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 57 A CYS 81 1_555 A SG CYS 104 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? disulf ? disulf3 A SG CYS 150 A CYS 174 1_555 A SG CYS 201 A CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? disulf ? disulf4 A SG CYS 234 A CYS 258 1_555 A SG CYS 271 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf5 A SG CYS 249 A CYS 273 1_555 A SG CYS 261 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? covale ? covale1 A ND2 ASN 198 A ASN 222 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale2 A CD1 TRP 225 A TRP 249 1_555 D C1 MAN . A MAN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.537 ? covale ? covale3 A CD1 TRP 228 A TRP 252 1_555 C C1 MAN . A MAN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale5 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OOL _atom_sites.fract_transf_matrix[1][1] 0.017841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MAN A 1 501 501 MAN DML . D 3 MAN A 1 502 502 MAN DML . E 4 CL A 1 506 901 CL CL . F 4 CL A 1 507 902 CL CL . G 4 CL A 1 508 903 CL CL . H 4 CL A 1 509 904 CL CL . I 4 CL A 1 510 905 CL CL . J 4 CL A 1 511 906 CL CL . K 4 CL A 1 512 907 CL CL . L 4 CL A 1 513 908 CL CL . M 4 CL A 1 514 909 CL CL . N 4 CL A 1 515 910 CL CL . O 4 CL A 1 516 911 CL CL . P 4 CL A 1 517 912 CL CL . Q 4 CL A 1 518 913 CL CL . R 5 HOH A 1 601 1018 HOH HOH . R 5 HOH A 2 602 1038 HOH HOH . R 5 HOH A 3 603 1054 HOH HOH . R 5 HOH A 4 604 1003 HOH HOH . R 5 HOH A 5 605 1014 HOH HOH . R 5 HOH A 6 606 1016 HOH HOH . R 5 HOH A 7 607 1021 HOH HOH . R 5 HOH A 8 608 1039 HOH HOH . R 5 HOH A 9 609 1047 HOH HOH . R 5 HOH A 10 610 1040 HOH HOH . R 5 HOH A 11 611 1052 HOH HOH . R 5 HOH A 12 612 1034 HOH HOH . R 5 HOH A 13 613 1022 HOH HOH . R 5 HOH A 14 614 1026 HOH HOH . R 5 HOH A 15 615 1048 HOH HOH . R 5 HOH A 16 616 1019 HOH HOH . R 5 HOH A 17 617 1005 HOH HOH . R 5 HOH A 18 618 1006 HOH HOH . R 5 HOH A 19 619 1009 HOH HOH . R 5 HOH A 20 620 1030 HOH HOH . R 5 HOH A 21 621 1023 HOH HOH . R 5 HOH A 22 622 1002 HOH HOH . R 5 HOH A 23 623 1036 HOH HOH . R 5 HOH A 24 624 1027 HOH HOH . R 5 HOH A 25 625 1008 HOH HOH . R 5 HOH A 26 626 1020 HOH HOH . R 5 HOH A 27 627 1004 HOH HOH . R 5 HOH A 28 628 1031 HOH HOH . R 5 HOH A 29 629 1050 HOH HOH . R 5 HOH A 30 630 1011 HOH HOH . R 5 HOH A 31 631 1053 HOH HOH . R 5 HOH A 32 632 1013 HOH HOH . R 5 HOH A 33 633 1007 HOH HOH . R 5 HOH A 34 634 1015 HOH HOH . R 5 HOH A 35 635 1029 HOH HOH . R 5 HOH A 36 636 1025 HOH HOH . R 5 HOH A 37 637 1045 HOH HOH . R 5 HOH A 38 638 1010 HOH HOH . R 5 HOH A 39 639 1012 HOH HOH . R 5 HOH A 40 640 1028 HOH HOH . R 5 HOH A 41 641 1055 HOH HOH . R 5 HOH A 42 642 1046 HOH HOH . R 5 HOH A 43 643 1032 HOH HOH . R 5 HOH A 44 644 1037 HOH HOH . R 5 HOH A 45 645 1051 HOH HOH . R 5 HOH A 46 646 1024 HOH HOH . R 5 HOH A 47 647 1044 HOH HOH . R 5 HOH A 48 648 1049 HOH HOH . R 5 HOH A 49 649 1033 HOH HOH . R 5 HOH A 50 650 1043 HOH HOH . R 5 HOH A 51 651 1035 HOH HOH . R 5 HOH A 52 652 1042 HOH HOH . R 5 HOH A 53 653 1001 HOH HOH . R 5 HOH A 54 654 1056 HOH HOH . R 5 HOH A 55 655 1017 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 4 _atom_site.Cartn_x 9.933 _atom_site.Cartn_y -10.626 _atom_site.Cartn_z 214.846 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 514 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #