data_6OOX # _model_server_result.job_id eCDg_nRgrfbMFKA7YQ6dSw _model_server_result.datetime_utc '2024-11-18 20:43:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6OOX # _exptl.entry_id 6OOX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.92 _cell.angle_gamma 90 _cell.entry_id 6OOX _cell.length_a 39.614 _cell.length_b 51.248 _cell.length_c 78.797 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OOX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 342 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 358 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.63 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 153 n n CHA C4D HEM doub 154 n n CHA HHA HEM sing 155 n n CHB C4A HEM sing 156 n n CHB C1B HEM doub 157 n n CHB HHB HEM sing 158 n n CHC C4B HEM sing 159 n n CHC C1C HEM doub 160 n n CHC HHC HEM sing 161 n n CHD C4C HEM doub 162 n n CHD C1D HEM sing 163 n n CHD HHD HEM sing 164 n n C1A C2A HEM doub 165 n y C1A NA HEM sing 166 n y C2A C3A HEM sing 167 n y C2A CAA HEM sing 168 n n C3A C4A HEM doub 169 n y C3A CMA HEM sing 170 n n C4A NA HEM sing 171 n y CMA HMA HEM sing 172 n n CMA HMAA HEM sing 173 n n CMA HMAB HEM sing 174 n n CAA CBA HEM sing 175 n n CAA HAA HEM sing 176 n n CAA HAAA HEM sing 177 n n CBA CGA HEM sing 178 n n CBA HBA HEM sing 179 n n CBA HBAA HEM sing 180 n n CGA O1A HEM doub 181 n n CGA O2A HEM sing 182 n n C1B C2B HEM sing 183 n n C1B NB HEM sing 184 n n C2B C3B HEM doub 185 n n C2B CMB HEM sing 186 n n C3B C4B HEM sing 187 n n C3B CAB HEM sing 188 n n C4B NB HEM doub 189 n n CMB HMB HEM sing 190 n n CMB HMBA HEM sing 191 n n CMB HMBB HEM sing 192 n n CAB CBB HEM doub 193 n n CAB HAB HEM sing 194 n n CBB HBB HEM sing 195 n n CBB HBBA HEM sing 196 n n C1C C2C HEM sing 197 n y C1C NC HEM sing 198 n y C2C C3C HEM doub 199 n y C2C CMC HEM sing 200 n n C3C C4C HEM sing 201 n y C3C CAC HEM sing 202 n n C4C NC HEM sing 203 n y CMC HMC HEM sing 204 n n CMC HMCA HEM sing 205 n n CMC HMCB HEM sing 206 n n CAC CBC HEM doub 207 n n CAC HAC HEM sing 208 n n CBC HBC HEM sing 209 n n CBC HBCA HEM sing 210 n n C1D C2D HEM sing 211 n n C1D ND HEM doub 212 n n C2D C3D HEM doub 213 n n C2D CMD HEM sing 214 n n C3D C4D HEM sing 215 n n C3D CAD HEM sing 216 n n C4D ND HEM sing 217 n n CMD HMD HEM sing 218 n n CMD HMDA HEM sing 219 n n CMD HMDB HEM sing 220 n n CAD CBD HEM sing 221 n n CAD HAD HEM sing 222 n n CAD HADA HEM sing 223 n n CBD CGD HEM sing 224 n n CBD HBD HEM sing 225 n n CBD HBDA HEM sing 226 n n CGD O1D HEM doub 227 n n CGD O2D HEM sing 228 n n O2A H2A HEM sing 229 n n O2D H2D HEM sing 230 n n FE NA HEM sing 231 n n FE NB HEM sing 232 n n FE NC HEM sing 233 n n FE ND HEM sing 234 n n # _atom_sites.entry_id 6OOX _atom_sites.fract_transf_matrix[1][1] 0.025244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001728 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 4IA A 1 502 1 4IA LIG . D 4 CL A 1 503 1 CL CL . E 5 HOH A 1 601 34 HOH HOH . E 5 HOH A 2 602 117 HOH HOH . E 5 HOH A 3 603 114 HOH HOH . E 5 HOH A 4 604 108 HOH HOH . E 5 HOH A 5 605 137 HOH HOH . E 5 HOH A 6 606 116 HOH HOH . E 5 HOH A 7 607 126 HOH HOH . E 5 HOH A 8 608 140 HOH HOH . E 5 HOH A 9 609 19 HOH HOH . E 5 HOH A 10 610 143 HOH HOH . E 5 HOH A 11 611 107 HOH HOH . E 5 HOH A 12 612 138 HOH HOH . E 5 HOH A 13 613 132 HOH HOH . E 5 HOH A 14 614 85 HOH HOH . E 5 HOH A 15 615 81 HOH HOH . E 5 HOH A 16 616 119 HOH HOH . E 5 HOH A 17 617 147 HOH HOH . E 5 HOH A 18 618 146 HOH HOH . E 5 HOH A 19 619 73 HOH HOH . E 5 HOH A 20 620 118 HOH HOH . E 5 HOH A 21 621 44 HOH HOH . E 5 HOH A 22 622 57 HOH HOH . E 5 HOH A 23 623 111 HOH HOH . E 5 HOH A 24 624 53 HOH HOH . E 5 HOH A 25 625 66 HOH HOH . E 5 HOH A 26 626 77 HOH HOH . E 5 HOH A 27 627 99 HOH HOH . E 5 HOH A 28 628 112 HOH HOH . E 5 HOH A 29 629 150 HOH HOH . E 5 HOH A 30 630 120 HOH HOH . E 5 HOH A 31 631 2 HOH HOH . E 5 HOH A 32 632 71 HOH HOH . E 5 HOH A 33 633 3 HOH HOH . E 5 HOH A 34 634 76 HOH HOH . E 5 HOH A 35 635 122 HOH HOH . E 5 HOH A 36 636 64 HOH HOH . E 5 HOH A 37 637 142 HOH HOH . E 5 HOH A 38 638 33 HOH HOH . E 5 HOH A 39 639 49 HOH HOH . E 5 HOH A 40 640 83 HOH HOH . E 5 HOH A 41 641 32 HOH HOH . E 5 HOH A 42 642 26 HOH HOH . E 5 HOH A 43 643 105 HOH HOH . E 5 HOH A 44 644 31 HOH HOH . E 5 HOH A 45 645 113 HOH HOH . E 5 HOH A 46 646 125 HOH HOH . E 5 HOH A 47 647 70 HOH HOH . E 5 HOH A 48 648 80 HOH HOH . E 5 HOH A 49 649 9 HOH HOH . E 5 HOH A 50 650 36 HOH HOH . E 5 HOH A 51 651 96 HOH HOH . E 5 HOH A 52 652 94 HOH HOH . E 5 HOH A 53 653 84 HOH HOH . E 5 HOH A 54 654 63 HOH HOH . E 5 HOH A 55 655 47 HOH HOH . E 5 HOH A 56 656 27 HOH HOH . E 5 HOH A 57 657 51 HOH HOH . E 5 HOH A 58 658 133 HOH HOH . E 5 HOH A 59 659 28 HOH HOH . E 5 HOH A 60 660 1 HOH HOH . E 5 HOH A 61 661 35 HOH HOH . E 5 HOH A 62 662 59 HOH HOH . E 5 HOH A 63 663 8 HOH HOH . E 5 HOH A 64 664 79 HOH HOH . E 5 HOH A 65 665 109 HOH HOH . E 5 HOH A 66 666 30 HOH HOH . E 5 HOH A 67 667 6 HOH HOH . E 5 HOH A 68 668 103 HOH HOH . E 5 HOH A 69 669 21 HOH HOH . E 5 HOH A 70 670 37 HOH HOH . E 5 HOH A 71 671 78 HOH HOH . E 5 HOH A 72 672 4 HOH HOH . E 5 HOH A 73 673 91 HOH HOH . E 5 HOH A 74 674 61 HOH HOH . E 5 HOH A 75 675 10 HOH HOH . E 5 HOH A 76 676 17 HOH HOH . E 5 HOH A 77 677 5 HOH HOH . E 5 HOH A 78 678 58 HOH HOH . E 5 HOH A 79 679 45 HOH HOH . E 5 HOH A 80 680 92 HOH HOH . E 5 HOH A 81 681 11 HOH HOH . E 5 HOH A 82 682 130 HOH HOH . E 5 HOH A 83 683 90 HOH HOH . E 5 HOH A 84 684 13 HOH HOH . E 5 HOH A 85 685 25 HOH HOH . E 5 HOH A 86 686 139 HOH HOH . E 5 HOH A 87 687 22 HOH HOH . E 5 HOH A 88 688 18 HOH HOH . E 5 HOH A 89 689 62 HOH HOH . E 5 HOH A 90 690 60 HOH HOH . E 5 HOH A 91 691 136 HOH HOH . E 5 HOH A 92 692 12 HOH HOH . E 5 HOH A 93 693 135 HOH HOH . E 5 HOH A 94 694 16 HOH HOH . E 5 HOH A 95 695 14 HOH HOH . E 5 HOH A 96 696 55 HOH HOH . E 5 HOH A 97 697 42 HOH HOH . E 5 HOH A 98 698 115 HOH HOH . E 5 HOH A 99 699 20 HOH HOH . E 5 HOH A 100 700 15 HOH HOH . E 5 HOH A 101 701 131 HOH HOH . E 5 HOH A 102 702 104 HOH HOH . E 5 HOH A 103 703 38 HOH HOH . E 5 HOH A 104 704 52 HOH HOH . E 5 HOH A 105 705 65 HOH HOH . E 5 HOH A 106 706 87 HOH HOH . E 5 HOH A 107 707 24 HOH HOH . E 5 HOH A 108 708 48 HOH HOH . E 5 HOH A 109 709 86 HOH HOH . E 5 HOH A 110 710 75 HOH HOH . E 5 HOH A 111 711 101 HOH HOH . E 5 HOH A 112 712 7 HOH HOH . E 5 HOH A 113 713 102 HOH HOH . E 5 HOH A 114 714 56 HOH HOH . E 5 HOH A 115 715 134 HOH HOH . E 5 HOH A 116 716 41 HOH HOH . E 5 HOH A 117 717 88 HOH HOH . E 5 HOH A 118 718 106 HOH HOH . E 5 HOH A 119 719 29 HOH HOH . E 5 HOH A 120 720 98 HOH HOH . E 5 HOH A 121 721 89 HOH HOH . E 5 HOH A 122 722 124 HOH HOH . E 5 HOH A 123 723 23 HOH HOH . E 5 HOH A 124 724 148 HOH HOH . E 5 HOH A 125 725 46 HOH HOH . E 5 HOH A 126 726 50 HOH HOH . E 5 HOH A 127 727 123 HOH HOH . E 5 HOH A 128 728 43 HOH HOH . E 5 HOH A 129 729 149 HOH HOH . E 5 HOH A 130 730 39 HOH HOH . E 5 HOH A 131 731 110 HOH HOH . E 5 HOH A 132 732 93 HOH HOH . E 5 HOH A 133 733 121 HOH HOH . E 5 HOH A 134 734 141 HOH HOH . E 5 HOH A 135 735 144 HOH HOH . E 5 HOH A 136 736 68 HOH HOH . E 5 HOH A 137 737 129 HOH HOH . E 5 HOH A 138 738 82 HOH HOH . E 5 HOH A 139 739 100 HOH HOH . E 5 HOH A 140 740 145 HOH HOH . E 5 HOH A 141 741 40 HOH HOH . E 5 HOH A 142 742 69 HOH HOH . E 5 HOH A 143 743 54 HOH HOH . E 5 HOH A 144 744 74 HOH HOH . E 5 HOH A 145 745 127 HOH HOH . E 5 HOH A 146 746 97 HOH HOH . E 5 HOH A 147 747 128 HOH HOH . E 5 HOH A 148 748 67 HOH HOH . E 5 HOH A 149 749 72 HOH HOH . E 5 HOH A 150 750 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 34.189 -1.666 94.903 1 22.29 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 36.265 -5.73 96.552 1 22.91 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 39.477 -5.524 92.917 1 20.6 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 38.045 -0.99 92.02 1 22.64 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 34.414 -2.803 95.644 1 23.06 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 33.596 -3.309 96.73 1 22.25 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 34.175 -4.431 97.18 1 21.46 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 35.38 -4.677 96.405 1 22.14 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 33.649 -5.311 98.333 1 19.56 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 32.288 -2.669 97.265 1 21.69 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 32.588 -1.427 98.104 1 21.04 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 31.316 -0.881 98.703 1 20.85 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 31.386 0.153 99.415 1 20.73 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 30.232 -1.471 98.475 1 16.97 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 37.286 -6.073 95.68 1 24.67 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 38.063 -7.305 95.688 1 22.21 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 38.954 -7.245 94.675 1 22.86 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 38.763 -5.974 94.007 1 25.35 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 37.821 -8.422 96.729 1 23.31 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 40.043 -8.238 94.185 1 23.78 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 40.28 -9.461 94.676 1 26.19 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 39.372 -4.278 92.34 1 24.12 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 40.131 -3.801 91.201 1 23.89 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 39.733 -2.536 90.946 1 25.28 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 38.716 -2.193 91.926 1 24.27 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 41.182 -4.697 90.501 1 28.35 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 40.184 -1.517 89.864 1 22.86 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 41.158 -1.711 88.966 1 25.86 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 36.871 -0.775 92.712 1 22.55 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 36.08 0.439 92.701 1 24.44 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 35.025 0.243 93.498 1 25.52 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 35.101 -1.094 94.04 1 21.02 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 36.41 1.721 91.906 1 25.69 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 33.891 1.239 93.808 1 19.39 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 32.771 1.033 92.795 1 23.73 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 31.568 1.817 93.237 1 22.46 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 30.552 1.825 92.5 1 22.42 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 31.633 2.453 94.32 1 20.26 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 35.491 -3.658 95.479 1 20.81 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 37.745 -5.291 94.64 1 25.71 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 38.523 -3.277 92.756 1 21.87 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 36.243 -1.689 93.539 1 21.71 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 36.985 -3.556 94.028 1 21.14 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #