data_6OOY
#
_model_server_result.job_id            Kpqi3Lq4V3q-aM0dmekC1Q 
_model_server_result.datetime_utc      '2024-11-29 18:14:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ooy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    6OOY 
#
_exptl.entry_id    6OOY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R)-2-METHYLPENTANE-2,4-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OOY 
_cell.length_a            54.53 
_cell.length_b            81.6 
_cell.length_c            92.26 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OOY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? 
disulf ? disulf2 B SG CYS 69 B CYS 69 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
disulf ? disulf3 C SG CYS 69 C CYS 69 1_555 C SG CYS 101 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R)-2-METHYLPENTANE-2,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MRD sing 258 n n 
C1 H1C1 MRD sing 259 n n 
C1 H1C2 MRD sing 260 n n 
C1 H1C3 MRD sing 261 n n 
C2 O2 MRD sing 262 n n 
C2 CM MRD sing 263 n n 
C2 C3 MRD sing 264 n n 
O2 H2 MRD sing 265 n n 
CM HMC1 MRD sing 266 n n 
CM HMC2 MRD sing 267 n n 
CM HMC3 MRD sing 268 n n 
C3 C4 MRD sing 269 n n 
C3 H3C1 MRD sing 270 n n 
C3 H3C2 MRD sing 271 n n 
C4 O4 MRD sing 272 n n 
C4 C5 MRD sing 273 n n 
C4 H4 MRD sing 274 n n 
O4 HA MRD sing 275 n n 
C5 H5C1 MRD sing 276 n n 
C5 H5C2 MRD sing 277 n n 
C5 H5C3 MRD sing 278 n n 
#
_atom_sites.entry_id                     6OOY 
_atom_sites.fract_transf_matrix[1][1]    0.018339 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012255 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010839 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MRD A 1 201 201 MRD MRD . 
E 3 A7M C 1 201 201 A7M A7M . 
F 4 HOH A 1 301 301 HOH HOH . 
F 4 HOH A 2 302 302 HOH HOH . 
F 4 HOH A 3 303 303 HOH HOH . 
F 4 HOH A 4 304 304 HOH HOH . 
F 4 HOH A 5 305 305 HOH HOH . 
F 4 HOH A 6 306 306 HOH HOH . 
F 4 HOH A 7 307 307 HOH HOH . 
F 4 HOH A 8 308 308 HOH HOH . 
F 4 HOH A 9 309 309 HOH HOH . 
F 4 HOH A 10 310 310 HOH HOH . 
F 4 HOH A 11 311 311 HOH HOH . 
F 4 HOH A 12 312 312 HOH HOH . 
F 4 HOH A 13 313 313 HOH HOH . 
F 4 HOH A 14 314 314 HOH HOH . 
F 4 HOH A 15 315 315 HOH HOH . 
F 4 HOH A 16 316 316 HOH HOH . 
F 4 HOH A 17 317 317 HOH HOH . 
F 4 HOH A 18 318 318 HOH HOH . 
F 4 HOH A 19 319 319 HOH HOH . 
F 4 HOH A 20 320 320 HOH HOH . 
F 4 HOH A 21 321 321 HOH HOH . 
F 4 HOH A 22 322 322 HOH HOH . 
F 4 HOH A 23 323 323 HOH HOH . 
F 4 HOH A 24 324 324 HOH HOH . 
F 4 HOH A 25 325 325 HOH HOH . 
F 4 HOH A 26 326 326 HOH HOH . 
F 4 HOH A 27 327 327 HOH HOH . 
F 4 HOH A 28 328 328 HOH HOH . 
F 4 HOH A 29 329 329 HOH HOH . 
F 4 HOH A 30 330 330 HOH HOH . 
F 4 HOH A 31 331 331 HOH HOH . 
F 4 HOH A 32 332 332 HOH HOH . 
G 4 HOH B 1 201 201 HOH HOH . 
G 4 HOH B 2 202 202 HOH HOH . 
G 4 HOH B 3 203 203 HOH HOH . 
G 4 HOH B 4 204 204 HOH HOH . 
G 4 HOH B 5 205 205 HOH HOH . 
G 4 HOH B 6 206 206 HOH HOH . 
G 4 HOH B 7 207 207 HOH HOH . 
G 4 HOH B 8 208 208 HOH HOH . 
G 4 HOH B 9 209 209 HOH HOH . 
G 4 HOH B 10 210 210 HOH HOH . 
G 4 HOH B 11 211 211 HOH HOH . 
G 4 HOH B 12 212 212 HOH HOH . 
G 4 HOH B 13 213 213 HOH HOH . 
G 4 HOH B 14 214 214 HOH HOH . 
G 4 HOH B 15 215 215 HOH HOH . 
G 4 HOH B 16 216 216 HOH HOH . 
G 4 HOH B 17 217 217 HOH HOH . 
G 4 HOH B 18 218 218 HOH HOH . 
G 4 HOH B 19 219 219 HOH HOH . 
G 4 HOH B 20 220 220 HOH HOH . 
G 4 HOH B 21 221 221 HOH HOH . 
G 4 HOH B 22 222 222 HOH HOH . 
G 4 HOH B 23 223 223 HOH HOH . 
G 4 HOH B 24 224 224 HOH HOH . 
G 4 HOH B 25 225 225 HOH HOH . 
G 4 HOH B 26 226 226 HOH HOH . 
G 4 HOH B 27 227 227 HOH HOH . 
G 4 HOH B 28 228 228 HOH HOH . 
G 4 HOH B 29 229 229 HOH HOH . 
G 4 HOH B 30 230 230 HOH HOH . 
G 4 HOH B 31 231 231 HOH HOH . 
G 4 HOH B 32 232 232 HOH HOH . 
G 4 HOH B 33 233 233 HOH HOH . 
G 4 HOH B 34 234 234 HOH HOH . 
H 4 HOH C 1 301 301 HOH HOH . 
H 4 HOH C 2 302 302 HOH HOH . 
H 4 HOH C 3 303 303 HOH HOH . 
H 4 HOH C 4 304 304 HOH HOH . 
H 4 HOH C 5 305 305 HOH HOH . 
H 4 HOH C 6 306 306 HOH HOH . 
H 4 HOH C 7 307 307 HOH HOH . 
H 4 HOH C 8 308 308 HOH HOH . 
H 4 HOH C 9 309 309 HOH HOH . 
H 4 HOH C 10 310 310 HOH HOH . 
H 4 HOH C 11 311 311 HOH HOH . 
H 4 HOH C 12 312 312 HOH HOH . 
H 4 HOH C 13 313 313 HOH HOH . 
H 4 HOH C 14 314 314 HOH HOH . 
H 4 HOH C 15 315 315 HOH HOH . 
H 4 HOH C 16 316 316 HOH HOH . 
H 4 HOH C 17 317 317 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MRD . . . D 2 -6.651 4.847 -13.873 1 13.58 ? C1 MRD 201 A 1 
HETATM 2 C C2 MRD . . . D 2 -7.195 3.769 -14.787 1 11.82 ? C2 MRD 201 A 1 
HETATM 3 O O2 MRD . . . D 2 -7.565 4.416 -16.033 1 10.19 ? O2 MRD 201 A 1 
HETATM 4 C CM MRD . . . D 2 -6.147 2.727 -15.136 1 13.25 ? CM MRD 201 A 1 
HETATM 5 C C3 MRD . . . D 2 -8.304 3.12 -13.978 1 11.07 ? C3 MRD 201 A 1 
HETATM 6 C C4 MRD . . . D 2 -9.577 2.808 -14.734 1 14.1 ? C4 MRD 201 A 1 
HETATM 7 O O4 MRD . . . D 2 -10.114 1.545 -14.328 1 18.9 ? O4 MRD 201 A 1 
HETATM 8 C C5 MRD . . . D 2 -9.361 2.809 -16.218 1 10.79 ? C5 MRD 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#