data_6OOY
#
_model_server_result.job_id            IvHFOYYy5H8GCSzIzEaJkA 
_model_server_result.datetime_utc      '2024-11-29 18:02:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ooy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    6OOY 
#
_exptl.entry_id    6OOY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              266.338 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            {1-[(2,5-dimethylphenyl)methyl]-1H-benzimidazol-2-yl}methanol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OOY 
_cell.length_a            54.53 
_cell.length_b            81.6 
_cell.length_c            92.26 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OOY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? 
disulf ? disulf2 B SG CYS 69 B CYS 69 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
disulf ? disulf3 C SG CYS 69 C CYS 69 1_555 C SG CYS 101 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
#
_chem_comp.formula           'C17 H18 N2 O' 
_chem_comp.formula_weight    266.338 
_chem_comp.id                A7M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              {1-[(2,5-dimethylphenyl)methyl]-1H-benzimidazol-2-yl}methanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C6 A7M sing 1 n n 
C5 C6 A7M doub 2 n y 
C5 C4 A7M sing 3 n y 
C6 C1 A7M sing 4 n y 
C4 C3 A7M doub 5 n y 
C1 C7 A7M sing 6 n n 
C1 C2 A7M doub 7 n y 
C3 C2 A7M sing 8 n y 
C3 C21 A7M sing 9 n n 
C7 N10 A7M sing 10 n n 
C20 C19 A7M doub 11 n y 
C20 C11 A7M sing 12 n y 
C19 C18 A7M sing 13 n y 
C11 N10 A7M sing 14 n y 
C11 C12 A7M doub 15 n y 
N10 C14 A7M sing 16 n y 
C18 C17 A7M doub 17 n y 
C14 C15 A7M sing 18 n n 
C14 N13 A7M doub 19 n y 
C12 C17 A7M sing 20 n y 
C12 N13 A7M sing 21 n y 
C15 O16 A7M sing 22 n n 
C2 H1 A7M sing 23 n n 
C4 H2 A7M sing 24 n n 
C5 H3 A7M sing 25 n n 
C7 H4 A7M sing 26 n n 
C7 H5 A7M sing 27 n n 
C9 H6 A7M sing 28 n n 
C9 H7 A7M sing 29 n n 
C9 H8 A7M sing 30 n n 
C17 H9 A7M sing 31 n n 
C18 H10 A7M sing 32 n n 
C19 H11 A7M sing 33 n n 
C20 H12 A7M sing 34 n n 
O16 H13 A7M sing 35 n n 
C15 H14 A7M sing 36 n n 
C15 H15 A7M sing 37 n n 
C21 H16 A7M sing 38 n n 
C21 H17 A7M sing 39 n n 
C21 H18 A7M sing 40 n n 
#
_atom_sites.entry_id                     6OOY 
_atom_sites.fract_transf_matrix[1][1]    0.018339 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012255 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010839 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MRD A 1 201 201 MRD MRD . 
E 3 A7M C 1 201 201 A7M A7M . 
F 4 HOH A 1 301 301 HOH HOH . 
F 4 HOH A 2 302 302 HOH HOH . 
F 4 HOH A 3 303 303 HOH HOH . 
F 4 HOH A 4 304 304 HOH HOH . 
F 4 HOH A 5 305 305 HOH HOH . 
F 4 HOH A 6 306 306 HOH HOH . 
F 4 HOH A 7 307 307 HOH HOH . 
F 4 HOH A 8 308 308 HOH HOH . 
F 4 HOH A 9 309 309 HOH HOH . 
F 4 HOH A 10 310 310 HOH HOH . 
F 4 HOH A 11 311 311 HOH HOH . 
F 4 HOH A 12 312 312 HOH HOH . 
F 4 HOH A 13 313 313 HOH HOH . 
F 4 HOH A 14 314 314 HOH HOH . 
F 4 HOH A 15 315 315 HOH HOH . 
F 4 HOH A 16 316 316 HOH HOH . 
F 4 HOH A 17 317 317 HOH HOH . 
F 4 HOH A 18 318 318 HOH HOH . 
F 4 HOH A 19 319 319 HOH HOH . 
F 4 HOH A 20 320 320 HOH HOH . 
F 4 HOH A 21 321 321 HOH HOH . 
F 4 HOH A 22 322 322 HOH HOH . 
F 4 HOH A 23 323 323 HOH HOH . 
F 4 HOH A 24 324 324 HOH HOH . 
F 4 HOH A 25 325 325 HOH HOH . 
F 4 HOH A 26 326 326 HOH HOH . 
F 4 HOH A 27 327 327 HOH HOH . 
F 4 HOH A 28 328 328 HOH HOH . 
F 4 HOH A 29 329 329 HOH HOH . 
F 4 HOH A 30 330 330 HOH HOH . 
F 4 HOH A 31 331 331 HOH HOH . 
F 4 HOH A 32 332 332 HOH HOH . 
G 4 HOH B 1 201 201 HOH HOH . 
G 4 HOH B 2 202 202 HOH HOH . 
G 4 HOH B 3 203 203 HOH HOH . 
G 4 HOH B 4 204 204 HOH HOH . 
G 4 HOH B 5 205 205 HOH HOH . 
G 4 HOH B 6 206 206 HOH HOH . 
G 4 HOH B 7 207 207 HOH HOH . 
G 4 HOH B 8 208 208 HOH HOH . 
G 4 HOH B 9 209 209 HOH HOH . 
G 4 HOH B 10 210 210 HOH HOH . 
G 4 HOH B 11 211 211 HOH HOH . 
G 4 HOH B 12 212 212 HOH HOH . 
G 4 HOH B 13 213 213 HOH HOH . 
G 4 HOH B 14 214 214 HOH HOH . 
G 4 HOH B 15 215 215 HOH HOH . 
G 4 HOH B 16 216 216 HOH HOH . 
G 4 HOH B 17 217 217 HOH HOH . 
G 4 HOH B 18 218 218 HOH HOH . 
G 4 HOH B 19 219 219 HOH HOH . 
G 4 HOH B 20 220 220 HOH HOH . 
G 4 HOH B 21 221 221 HOH HOH . 
G 4 HOH B 22 222 222 HOH HOH . 
G 4 HOH B 23 223 223 HOH HOH . 
G 4 HOH B 24 224 224 HOH HOH . 
G 4 HOH B 25 225 225 HOH HOH . 
G 4 HOH B 26 226 226 HOH HOH . 
G 4 HOH B 27 227 227 HOH HOH . 
G 4 HOH B 28 228 228 HOH HOH . 
G 4 HOH B 29 229 229 HOH HOH . 
G 4 HOH B 30 230 230 HOH HOH . 
G 4 HOH B 31 231 231 HOH HOH . 
G 4 HOH B 32 232 232 HOH HOH . 
G 4 HOH B 33 233 233 HOH HOH . 
G 4 HOH B 34 234 234 HOH HOH . 
H 4 HOH C 1 301 301 HOH HOH . 
H 4 HOH C 2 302 302 HOH HOH . 
H 4 HOH C 3 303 303 HOH HOH . 
H 4 HOH C 4 304 304 HOH HOH . 
H 4 HOH C 5 305 305 HOH HOH . 
H 4 HOH C 6 306 306 HOH HOH . 
H 4 HOH C 7 307 307 HOH HOH . 
H 4 HOH C 8 308 308 HOH HOH . 
H 4 HOH C 9 309 309 HOH HOH . 
H 4 HOH C 10 310 310 HOH HOH . 
H 4 HOH C 11 311 311 HOH HOH . 
H 4 HOH C 12 312 312 HOH HOH . 
H 4 HOH C 13 313 313 HOH HOH . 
H 4 HOH C 14 314 314 HOH HOH . 
H 4 HOH C 15 315 315 HOH HOH . 
H 4 HOH C 16 316 316 HOH HOH . 
H 4 HOH C 17 317 317 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A7M . . . E 3 -11.059 1.827 -19.996 1 2 ? C1 A7M 201 C 1 
HETATM 2 C C2 A7M . . . E 3 -10.798 2.818 -19.104 1 2 ? C2 A7M 201 C 1 
HETATM 3 C C3 A7M . . . E 3 -10.605 4.133 -19.545 1 2 ? C3 A7M 201 C 1 
HETATM 4 C C4 A7M . . . E 3 -10.598 4.446 -20.91 1 2 ? C4 A7M 201 C 1 
HETATM 5 C C5 A7M . . . E 3 -10.81 3.433 -21.833 1 2 ? C5 A7M 201 C 1 
HETATM 6 C C6 A7M . . . E 3 -11.026 2.112 -21.376 1 2 ? C6 A7M 201 C 1 
HETATM 7 C C7 A7M . . . E 3 -11.255 0.391 -19.528 1 2 ? C7 A7M 201 C 1 
HETATM 8 C C9 A7M . . . E 3 -11.284 0.964 -22.359 1 2 ? C9 A7M 201 C 1 
HETATM 9 N N10 A7M . . . E 3 -12.176 0.278 -18.399 1 5.73 ? N10 A7M 201 C 1 
HETATM 10 C C12 A7M . . . E 3 -13.951 0.353 -17.141 1 9.26 ? C12 A7M 201 C 1 
HETATM 11 C C17 A7M . . . E 3 -15.291 0.609 -16.909 1 10.08 ? C17 A7M 201 C 1 
HETATM 12 C C18 A7M . . . E 3 -16.101 1.098 -17.922 1 7.54 ? C18 A7M 201 C 1 
HETATM 13 C C19 A7M . . . E 3 -15.573 1.371 -19.173 1 9.14 ? C19 A7M 201 C 1 
HETATM 14 C C20 A7M . . . E 3 -14.24 1.118 -19.435 1 9.82 ? C20 A7M 201 C 1 
HETATM 15 O O16 A7M . . . E 3 -10.583 -1.121 -15.513 1 13.6 ? O16 A7M 201 C 1 
HETATM 16 C C15 A7M . . . E 3 -10.512 -0.64 -16.837 1 9.96 ? C15 A7M 201 C 1 
HETATM 17 C C14 A7M . . . E 3 -11.88 -0.17 -17.179 1 9.44 ? C14 A7M 201 C 1 
HETATM 18 C C11 A7M . . . E 3 -13.445 0.616 -18.41 1 9.05 ? C11 A7M 201 C 1 
HETATM 19 N N13 A7M . . . E 3 -12.968 -0.149 -16.366 1 7.74 ? N13 A7M 201 C 1 
HETATM 20 C C21 A7M . . . E 3 -10.354 5.205 -18.524 1 2 ? C21 A7M 201 C 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           20 
#