data_6OP0
#
_model_server_result.job_id            9cFhm5XOh8ZdwAoD7OooAg 
_model_server_result.datetime_utc      '2025-07-30 23:14:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6op0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    6OP0 
#
_exptl.entry_id    6OP0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              423.51 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (R)-{1-[(2,5-dimethylphenyl)methyl]-6-(1-methyl-1H-pyrazol-4-yl)-1H-benzimidazol-2-yl}(pyridin-4-yl)methanol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OP0 
_cell.length_a            54.17 
_cell.length_b            81.99 
_cell.length_c            94.17 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 70 A CYS 69 1_555 A SG CYS 102 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
disulf ? disulf2 B SG CYS 70 B CYS 69 1_555 B SG CYS 102 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf3 C SG CYS 70 C CYS 69 1_555 C SG CYS 102 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
#
_chem_comp.formula           'C26 H25 N5 O' 
_chem_comp.formula_weight    423.51 
_chem_comp.id                A7A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (R)-{1-[(2,5-dimethylphenyl)methyl]-6-(1-methyl-1H-pyrazol-4-yl)-1H-benzimidazol-2-yl}(pyridin-4-yl)methanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C21 A7A doub 1 n y 
C22 N4 A7A sing 2 n y 
C21 C20 A7A sing 3 n y 
N4 C23 A7A doub 4 n y 
O C19 A7A sing 5 n n 
C20 C19 A7A sing 6 n n 
C20 C24 A7A doub 7 n y 
C23 C24 A7A sing 8 n y 
N1 C9 A7A sing 9 n y 
N1 C8 A7A doub 10 n y 
C19 C8 A7A sing 11 n n 
C10 C9 A7A doub 12 n y 
C10 C11 A7A sing 13 n y 
C9 C14 A7A sing 14 n y 
C8 N A7A sing 15 n y 
C11 C12 A7A doub 16 n y 
C14 N A7A sing 17 n y 
C14 C13 A7A doub 18 n y 
N C7 A7A sing 19 n n 
C C1 A7A sing 20 n n 
C25 C1 A7A doub 21 n y 
C25 C6 A7A sing 22 n y 
C12 C13 A7A sing 23 n y 
C12 C15 A7A sing 24 n n 
C1 C2 A7A sing 25 n y 
C7 C6 A7A sing 26 n n 
C15 C16 A7A sing 27 n y 
C15 C18 A7A doub 28 n y 
C6 C4 A7A doub 29 n y 
C16 N2 A7A doub 30 n y 
C2 C3 A7A doub 31 n y 
C18 N3 A7A sing 32 n y 
N2 N3 A7A sing 33 n y 
C4 C3 A7A sing 34 n y 
C4 C5 A7A sing 35 n n 
N3 C17 A7A sing 36 n n 
O H1 A7A sing 37 n n 
C19 H2 A7A sing 38 n n 
C24 H3 A7A sing 39 n n 
C23 H4 A7A sing 40 n n 
C22 H5 A7A sing 41 n n 
C21 H6 A7A sing 42 n n 
C7 H7 A7A sing 43 n n 
C7 H8 A7A sing 44 n n 
C5 H9 A7A sing 45 n n 
C5 H10 A7A sing 46 n n 
C5 H11 A7A sing 47 n n 
C3 H12 A7A sing 48 n n 
C2 H13 A7A sing 49 n n 
C25 H14 A7A sing 50 n n 
C H15 A7A sing 51 n n 
C H16 A7A sing 52 n n 
C H17 A7A sing 53 n n 
C13 H18 A7A sing 54 n n 
C11 H19 A7A sing 55 n n 
C10 H20 A7A sing 56 n n 
C18 H21 A7A sing 57 n n 
C17 H22 A7A sing 58 n n 
C17 H23 A7A sing 59 n n 
C17 H24 A7A sing 60 n n 
C16 H25 A7A sing 61 n n 
#
_atom_sites.entry_id                     6OP0 
_atom_sites.fract_transf_matrix[1][1]    0.01846 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010619 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 A7A C 1 201 201 A7A A7A . 
E 3 HOH A 1 201 201 HOH HOH . 
E 3 HOH A 2 202 202 HOH HOH . 
E 3 HOH A 3 203 203 HOH HOH . 
E 3 HOH A 4 204 204 HOH HOH . 
E 3 HOH A 5 205 205 HOH HOH . 
E 3 HOH A 6 206 206 HOH HOH . 
E 3 HOH A 7 207 207 HOH HOH . 
E 3 HOH A 8 208 208 HOH HOH . 
E 3 HOH A 9 209 209 HOH HOH . 
E 3 HOH A 10 210 210 HOH HOH . 
E 3 HOH A 11 211 211 HOH HOH . 
E 3 HOH A 12 212 212 HOH HOH . 
E 3 HOH A 13 213 213 HOH HOH . 
E 3 HOH A 14 214 214 HOH HOH . 
E 3 HOH A 15 215 215 HOH HOH . 
E 3 HOH A 16 216 216 HOH HOH . 
E 3 HOH A 17 217 217 HOH HOH . 
E 3 HOH A 18 218 218 HOH HOH . 
E 3 HOH A 19 219 219 HOH HOH . 
E 3 HOH A 20 220 220 HOH HOH . 
E 3 HOH A 21 221 221 HOH HOH . 
E 3 HOH A 22 222 222 HOH HOH . 
E 3 HOH A 23 223 223 HOH HOH . 
E 3 HOH A 24 224 224 HOH HOH . 
E 3 HOH A 25 225 225 HOH HOH . 
E 3 HOH A 26 226 226 HOH HOH . 
F 3 HOH B 1 201 201 HOH HOH . 
F 3 HOH B 2 202 202 HOH HOH . 
F 3 HOH B 3 203 203 HOH HOH . 
F 3 HOH B 4 204 204 HOH HOH . 
F 3 HOH B 5 205 205 HOH HOH . 
F 3 HOH B 6 206 206 HOH HOH . 
F 3 HOH B 7 207 207 HOH HOH . 
F 3 HOH B 8 208 208 HOH HOH . 
F 3 HOH B 9 209 209 HOH HOH . 
F 3 HOH B 10 210 210 HOH HOH . 
F 3 HOH B 11 211 211 HOH HOH . 
F 3 HOH B 12 212 212 HOH HOH . 
F 3 HOH B 13 213 213 HOH HOH . 
F 3 HOH B 14 214 214 HOH HOH . 
F 3 HOH B 15 215 215 HOH HOH . 
F 3 HOH B 16 216 216 HOH HOH . 
F 3 HOH B 17 217 217 HOH HOH . 
F 3 HOH B 18 218 218 HOH HOH . 
F 3 HOH B 19 219 219 HOH HOH . 
F 3 HOH B 20 220 220 HOH HOH . 
F 3 HOH B 21 221 221 HOH HOH . 
F 3 HOH B 22 222 222 HOH HOH . 
F 3 HOH B 23 223 223 HOH HOH . 
F 3 HOH B 24 224 224 HOH HOH . 
F 3 HOH B 25 225 225 HOH HOH . 
F 3 HOH B 26 226 226 HOH HOH . 
F 3 HOH B 27 227 227 HOH HOH . 
F 3 HOH B 28 228 228 HOH HOH . 
F 3 HOH B 29 229 229 HOH HOH . 
F 3 HOH B 30 230 230 HOH HOH . 
F 3 HOH B 31 231 231 HOH HOH . 
F 3 HOH B 32 232 232 HOH HOH . 
G 3 HOH C 1 301 301 HOH HOH . 
G 3 HOH C 2 302 302 HOH HOH . 
G 3 HOH C 3 303 303 HOH HOH . 
G 3 HOH C 4 304 304 HOH HOH . 
G 3 HOH C 5 305 305 HOH HOH . 
G 3 HOH C 6 306 306 HOH HOH . 
G 3 HOH C 7 307 307 HOH HOH . 
G 3 HOH C 8 308 308 HOH HOH . 
G 3 HOH C 9 309 309 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O A7A . . . D 2 -10.999 1.815 16.015 1 32.51 ? O A7A 201 C 1 
HETATM 2 C C19 A7A . . . D 2 -10.809 0.943 17.087 1 25.78 ? C19 A7A 201 C 1 
HETATM 3 C C20 A7A . . . D 2 -10.123 -0.286 16.569 1 25.21 ? C20 A7A 201 C 1 
HETATM 4 C C24 A7A . . . D 2 -8.951 -0.749 17.143 1 25.26 ? C24 A7A 201 C 1 
HETATM 5 C C23 A7A . . . D 2 -8.381 -1.946 16.698 1 24.96 ? C23 A7A 201 C 1 
HETATM 6 N N4 A7A . . . D 2 -8.976 -2.678 15.718 1 25.38 ? N4 A7A 201 C 1 
HETATM 7 C C22 A7A . . . D 2 -10.131 -2.27 15.162 1 24.86 ? C22 A7A 201 C 1 
HETATM 8 C C21 A7A . . . D 2 -10.726 -1.067 15.58 1 25.71 ? C21 A7A 201 C 1 
HETATM 9 C C8 A7A . . . D 2 -12.12 0.482 17.572 1 24.77 ? C8 A7A 201 C 1 
HETATM 10 N N1 A7A . . . D 2 -13.208 0.423 16.799 1 23.58 ? N1 A7A 201 C 1 
HETATM 11 C C9 A7A . . . D 2 -14.194 -0.153 17.532 1 26.84 ? C9 A7A 201 C 1 
HETATM 12 C C14 A7A . . . D 2 -13.682 -0.477 18.793 1 25.32 ? C14 A7A 201 C 1 
HETATM 13 N N A7A . . . D 2 -12.405 -0.111 18.796 1 24.98 ? N A7A 201 C 1 
HETATM 14 C C7 A7A . . . D 2 -11.494 -0.229 19.957 1 22.62 ? C7 A7A 201 C 1 
HETATM 15 C C6 A7A . . . D 2 -11.195 -1.672 20.347 1 21.26 ? C6 A7A 201 C 1 
HETATM 16 C C4 A7A . . . D 2 -11.102 -1.971 21.679 1 20.17 ? C4 A7A 201 C 1 
HETATM 17 C C5 A7A . . . D 2 -11.353 -0.904 22.715 1 19.93 ? C5 A7A 201 C 1 
HETATM 18 C C3 A7A . . . D 2 -10.834 -3.253 22.074 1 20.33 ? C3 A7A 201 C 1 
HETATM 19 C C2 A7A . . . D 2 -10.63 -4.25 21.139 1 20.19 ? C2 A7A 201 C 1 
HETATM 20 C C25 A7A . . . D 2 -10.949 -2.667 19.392 1 19.75 ? C25 A7A 201 C 1 
HETATM 21 C C1 A7A . . . D 2 -10.666 -3.958 19.804 1 20.06 ? C1 A7A 201 C 1 
HETATM 22 C C A7A . . . D 2 -10.395 -5.077 18.812 1 20.33 ? C A7A 201 C 1 
HETATM 23 C C13 A7A . . . D 2 -14.501 -1.075 19.755 1 25.39 ? C13 A7A 201 C 1 
HETATM 24 C C12 A7A . . . D 2 -15.845 -1.369 19.443 1 27.6 ? C12 A7A 201 C 1 
HETATM 25 C C11 A7A . . . D 2 -16.344 -1.034 18.195 1 27.36 ? C11 A7A 201 C 1 
HETATM 26 C C10 A7A . . . D 2 -15.523 -0.446 17.238 1 26.87 ? C10 A7A 201 C 1 
HETATM 27 C C15 A7A . . . D 2 -16.676 -2.081 20.334 1 31.64 ? C15 A7A 201 C 1 
HETATM 28 C C18 A7A . . . D 2 -16.306 -3.127 21.183 1 32.32 ? C18 A7A 201 C 1 
HETATM 29 N N3 A7A . . . D 2 -17.401 -3.494 21.85 1 32.99 ? N3 A7A 201 C 1 
HETATM 30 C C17 A7A . . . D 2 -17.665 -4.528 22.879 1 34.41 ? C17 A7A 201 C 1 
HETATM 31 N N2 A7A . . . D 2 -18.506 -2.725 21.496 1 37.28 ? N2 A7A 201 C 1 
HETATM 32 C C16 A7A . . . D 2 -18.057 -1.852 20.541 1 36.61 ? C16 A7A 201 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#