data_6OPB # _model_server_result.job_id tU5lR1btNcgK5oDYah5W2g _model_server_result.datetime_utc '2024-10-31 08:21:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6opb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":201}' # _entry.id 6OPB # _exptl.entry_id 6OPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OPB _cell.length_a 154.259 _cell.length_b 154.259 _cell.length_c 58.043 _cell.Z_PDB 27 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 ? monomeric 1 author_defined_assembly 9 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,J,N 1 1 B,O 2 1 C,K,P 3 1 D,L,Q 4 1 E,R 5 1 F,S 6 1 G,T 7 1 H,U 8 1 I,M,V 9 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 E CYS 18 1_555 A SG CYS 49 E CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 45 E CYS 45 1_555 A SG CYS 98 E CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf3 A SG CYS 88 E CYS 88 1_555 A SG CYS 107 E CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 B SG CYS 18 A CYS 18 1_555 B SG CYS 49 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 45 A CYS 45 1_555 B SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf6 B SG CYS 88 A CYS 88 1_555 B SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 C SG CYS 18 B CYS 18 1_555 C SG CYS 49 B CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 C SG CYS 45 B CYS 45 1_555 C SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf9 C SG CYS 88 B CYS 88 1_555 C SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf10 D SG CYS 18 F CYS 18 1_555 D SG CYS 49 F CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf11 D SG CYS 45 F CYS 45 1_555 D SG CYS 98 F CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf12 D SG CYS 88 F CYS 88 1_555 D SG CYS 107 F CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf13 E SG CYS 18 C CYS 18 1_555 E SG CYS 49 C CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf14 E SG CYS 45 C CYS 45 1_555 E SG CYS 98 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf15 E SG CYS 88 C CYS 88 1_555 E SG CYS 107 C CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf16 F SG CYS 18 D CYS 18 1_555 F SG CYS 49 D CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf17 F SG CYS 45 D CYS 45 1_555 F SG CYS 98 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf18 F SG CYS 88 D CYS 88 1_555 F SG CYS 107 D CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf19 G SG CYS 18 G CYS 18 1_555 G SG CYS 49 G CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf20 G SG CYS 45 G CYS 45 1_555 G SG CYS 98 G CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf21 G SG CYS 88 G CYS 88 1_555 G SG CYS 107 G CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf22 H SG CYS 18 H CYS 18 1_555 H SG CYS 49 H CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf23 H SG CYS 45 H CYS 45 1_555 H SG CYS 98 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf24 H SG CYS 88 H CYS 88 1_555 H SG CYS 107 H CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf25 I SG CYS 18 I CYS 18 1_555 I SG CYS 49 I CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf26 I SG CYS 45 I CYS 45 1_555 I SG CYS 98 I CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf27 I SG CYS 88 I CYS 88 1_555 I SG CYS 107 I CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 144 n n S C1 DMS sing 145 n n S C2 DMS sing 146 n n C1 H11 DMS sing 147 n n C1 H12 DMS sing 148 n n C1 H13 DMS sing 149 n n C2 H21 DMS sing 150 n n C2 H22 DMS sing 151 n n C2 H23 DMS sing 152 n n # _atom_sites.entry_id 6OPB _atom_sites.fract_transf_matrix[1][1] 0.006483 _atom_sites.fract_transf_matrix[1][2] 0.003743 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 2 DCR E 1 201 202 DCR DCR . K 3 DMS B 1 201 201 DMS DMS . L 2 DCR F 1 201 203 DCR DCR . M 2 DCR I 1 201 201 DCR DCR . N 4 HOH E 1 301 41 HOH HOH . N 4 HOH E 2 302 115 HOH HOH . N 4 HOH E 3 303 116 HOH HOH . N 4 HOH E 4 304 114 HOH HOH . N 4 HOH E 5 305 91 HOH HOH . N 4 HOH E 6 306 112 HOH HOH . N 4 HOH E 7 307 113 HOH HOH . O 4 HOH A 1 201 79 HOH HOH . O 4 HOH A 2 202 77 HOH HOH . O 4 HOH A 3 203 102 HOH HOH . O 4 HOH A 4 204 101 HOH HOH . O 4 HOH A 5 205 105 HOH HOH . O 4 HOH A 6 206 175 HOH HOH . O 4 HOH A 7 207 104 HOH HOH . O 4 HOH A 8 208 24 HOH HOH . O 4 HOH A 9 209 106 HOH HOH . O 4 HOH A 10 210 20 HOH HOH . O 4 HOH A 11 211 103 HOH HOH . O 4 HOH A 12 212 78 HOH HOH . O 4 HOH A 13 213 100 HOH HOH . O 4 HOH A 14 214 80 HOH HOH . O 4 HOH A 15 215 111 HOH HOH . P 4 HOH B 1 301 108 HOH HOH . P 4 HOH B 2 302 109 HOH HOH . P 4 HOH B 3 303 37 HOH HOH . P 4 HOH B 4 304 21 HOH HOH . P 4 HOH B 5 305 176 HOH HOH . P 4 HOH B 6 306 69 HOH HOH . P 4 HOH B 7 307 22 HOH HOH . P 4 HOH B 8 308 14 HOH HOH . P 4 HOH B 9 309 11 HOH HOH . P 4 HOH B 10 310 35 HOH HOH . P 4 HOH B 11 311 28 HOH HOH . P 4 HOH B 12 312 110 HOH HOH . P 4 HOH B 13 313 38 HOH HOH . P 4 HOH B 14 314 107 HOH HOH . P 4 HOH B 15 315 19 HOH HOH . P 4 HOH B 16 316 177 HOH HOH . P 4 HOH B 17 317 178 HOH HOH . P 4 HOH B 18 318 74 HOH HOH . P 4 HOH B 19 319 73 HOH HOH . P 4 HOH B 20 320 86 HOH HOH . P 4 HOH B 21 321 66 HOH HOH . P 4 HOH B 22 322 88 HOH HOH . Q 4 HOH F 1 301 134 HOH HOH . Q 4 HOH F 2 302 81 HOH HOH . Q 4 HOH F 3 303 25 HOH HOH . Q 4 HOH F 4 304 135 HOH HOH . Q 4 HOH F 5 305 16 HOH HOH . Q 4 HOH F 6 306 136 HOH HOH . Q 4 HOH F 7 307 132 HOH HOH . Q 4 HOH F 8 308 127 HOH HOH . R 4 HOH C 1 201 93 HOH HOH . R 4 HOH C 2 202 50 HOH HOH . R 4 HOH C 3 203 3 HOH HOH . R 4 HOH C 4 204 12 HOH HOH . R 4 HOH C 5 205 125 HOH HOH . R 4 HOH C 6 206 71 HOH HOH . R 4 HOH C 7 207 140 HOH HOH . R 4 HOH C 8 208 70 HOH HOH . R 4 HOH C 9 209 124 HOH HOH . R 4 HOH C 10 210 141 HOH HOH . R 4 HOH C 11 211 123 HOH HOH . R 4 HOH C 12 212 122 HOH HOH . R 4 HOH C 13 213 131 HOH HOH . R 4 HOH C 14 214 142 HOH HOH . S 4 HOH D 1 201 10 HOH HOH . S 4 HOH D 2 202 76 HOH HOH . S 4 HOH D 3 203 133 HOH HOH . S 4 HOH D 4 204 26 HOH HOH . S 4 HOH D 5 205 82 HOH HOH . S 4 HOH D 6 206 72 HOH HOH . S 4 HOH D 7 207 17 HOH HOH . S 4 HOH D 8 208 120 HOH HOH . S 4 HOH D 9 209 75 HOH HOH . S 4 HOH D 10 210 23 HOH HOH . S 4 HOH D 11 211 83 HOH HOH . S 4 HOH D 12 212 6 HOH HOH . S 4 HOH D 13 213 137 HOH HOH . S 4 HOH D 14 214 119 HOH HOH . S 4 HOH D 15 215 68 HOH HOH . S 4 HOH D 16 216 161 HOH HOH . S 4 HOH D 17 217 162 HOH HOH . S 4 HOH D 18 218 121 HOH HOH . S 4 HOH D 19 219 129 HOH HOH . S 4 HOH D 20 220 139 HOH HOH . S 4 HOH D 21 221 126 HOH HOH . S 4 HOH D 22 222 138 HOH HOH . S 4 HOH D 23 223 117 HOH HOH . T 4 HOH G 1 201 165 HOH HOH . T 4 HOH G 2 202 29 HOH HOH . T 4 HOH G 3 203 13 HOH HOH . T 4 HOH G 4 204 163 HOH HOH . T 4 HOH G 5 205 130 HOH HOH . T 4 HOH G 6 206 166 HOH HOH . T 4 HOH G 7 207 4 HOH HOH . T 4 HOH G 8 208 164 HOH HOH . T 4 HOH G 9 209 32 HOH HOH . T 4 HOH G 10 210 56 HOH HOH . T 4 HOH G 11 211 84 HOH HOH . T 4 HOH G 12 212 157 HOH HOH . T 4 HOH G 13 213 149 HOH HOH . T 4 HOH G 14 214 85 HOH HOH . U 4 HOH H 1 201 15 HOH HOH . U 4 HOH H 2 202 158 HOH HOH . U 4 HOH H 3 203 36 HOH HOH . U 4 HOH H 4 204 172 HOH HOH . U 4 HOH H 5 205 152 HOH HOH . U 4 HOH H 6 206 40 HOH HOH . U 4 HOH H 7 207 148 HOH HOH . U 4 HOH H 8 208 87 HOH HOH . U 4 HOH H 9 209 169 HOH HOH . U 4 HOH H 10 210 154 HOH HOH . U 4 HOH H 11 211 160 HOH HOH . U 4 HOH H 12 212 46 HOH HOH . U 4 HOH H 13 213 49 HOH HOH . U 4 HOH H 14 214 156 HOH HOH . U 4 HOH H 15 215 48 HOH HOH . U 4 HOH H 16 216 7 HOH HOH . U 4 HOH H 17 217 47 HOH HOH . U 4 HOH H 18 218 9 HOH HOH . U 4 HOH H 19 219 2 HOH HOH . U 4 HOH H 20 220 153 HOH HOH . U 4 HOH H 21 221 51 HOH HOH . U 4 HOH H 22 222 151 HOH HOH . U 4 HOH H 23 223 174 HOH HOH . U 4 HOH H 24 224 67 HOH HOH . U 4 HOH H 25 225 150 HOH HOH . U 4 HOH H 26 226 45 HOH HOH . V 4 HOH I 1 301 94 HOH HOH . V 4 HOH I 2 302 58 HOH HOH . V 4 HOH I 3 303 18 HOH HOH . V 4 HOH I 4 304 145 HOH HOH . V 4 HOH I 5 305 89 HOH HOH . V 4 HOH I 6 306 60 HOH HOH . V 4 HOH I 7 307 62 HOH HOH . V 4 HOH I 8 308 8 HOH HOH . V 4 HOH I 9 309 65 HOH HOH . V 4 HOH I 10 310 173 HOH HOH . V 4 HOH I 11 311 61 HOH HOH . V 4 HOH I 12 312 57 HOH HOH . V 4 HOH I 13 313 64 HOH HOH . V 4 HOH I 14 314 146 HOH HOH . V 4 HOH I 15 315 96 HOH HOH . V 4 HOH I 16 316 168 HOH HOH . V 4 HOH I 17 317 5 HOH HOH . V 4 HOH I 18 318 63 HOH HOH . V 4 HOH I 19 319 54 HOH HOH . V 4 HOH I 20 320 170 HOH HOH . V 4 HOH I 21 321 43 HOH HOH . V 4 HOH I 22 322 52 HOH HOH . V 4 HOH I 23 323 167 HOH HOH . V 4 HOH I 24 324 171 HOH HOH . V 4 HOH I 25 325 90 HOH HOH . V 4 HOH I 26 326 144 HOH HOH . V 4 HOH I 27 327 33 HOH HOH . V 4 HOH I 28 328 59 HOH HOH . V 4 HOH I 29 329 95 HOH HOH . V 4 HOH I 30 330 53 HOH HOH . V 4 HOH I 31 331 39 HOH HOH . V 4 HOH I 32 332 55 HOH HOH . V 4 HOH I 33 333 44 HOH HOH . V 4 HOH I 34 334 42 HOH HOH . V 4 HOH I 35 335 98 HOH HOH . V 4 HOH I 36 336 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . K 3 104.518 110.428 6.937 1 39.7 ? S DMS 201 B 1 HETATM 2 O O DMS . . . K 3 103.813 111.553 6.22 1 39.99 ? O DMS 201 B 1 HETATM 3 C C1 DMS . . . K 3 103.63 108.933 6.596 1 37.07 ? C1 DMS 201 B 1 HETATM 4 C C2 DMS . . . K 3 106.012 110.074 6.032 1 35.99 ? C2 DMS 201 B 1 HETATM 5 H H11 DMS . . . K 3 102.813 108.92 7.113 1 37.78 ? H11 DMS 201 B 1 HETATM 6 H H12 DMS . . . K 3 104.177 108.173 6.836 1 37.78 ? H12 DMS 201 B 1 HETATM 7 H H13 DMS . . . K 3 103.417 108.893 5.653 1 37.76 ? H13 DMS 201 B 1 HETATM 8 H H21 DMS . . . K 3 105.865 110.241 5.091 1 37.02 ? H21 DMS 201 B 1 HETATM 9 H H22 DMS . . . K 3 106.253 109.146 6.162 1 37.02 ? H22 DMS 201 B 1 HETATM 10 H H23 DMS . . . K 3 106.725 110.641 6.354 1 37.02 ? H23 DMS 201 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #