data_6OPC
#
_model_server_result.job_id            twm_VQ0WDNOLntYJk-88bA 
_model_server_result.datetime_utc      '2024-11-15 08:56:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6opc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":901}' 
#
_entry.id    6OPC 
#
_exptl.entry_id    6OPC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OPC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OPC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 L N N 
? 4 O N N 
? 4 Q N N 
? 4 U N N 
? 4 X N N 
? 4 AA N N 
? 4 DA N N 
? 4 GA N N 
? 4 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 262 A THR 262 1_555 N MG MG . A MG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc2 A OG1 THR 535 A THR 535 1_555 K MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc3 I O1B ADP . A ADP 901 1_555 J BE BEF . A BEF 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? 
metalc ? metalc4 L O1B ADP . A ADP 904 1_555 M BE BEF . A BEF 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? 
metalc ? metalc5 L O3B ADP . A ADP 904 1_555 N MG MG . A MG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc6 B OG1 THR 262 B THR 262 1_555 S MG MG . B MG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc7 B OG1 THR 535 B THR 535 1_555 P MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc8 O O3B ADP . B ADP 901 1_555 P MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc9 O O1B ADP . B ADP 901 1_555 T BE BEF . C BEF 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? 
metalc ? metalc10 Q O1B ADP . B ADP 903 1_555 R BE BEF . B BEF 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? 
metalc ? metalc11 C OG1 THR 262 C THR 262 1_555 Z MG MG . C MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc12 C OG1 THR 535 C THR 535 1_555 W MG MG . C MG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc13 U O1B ADP . C ADP 902 1_555 V BE BEF . C BEF 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? 
metalc ? metalc14 X O1B ADP . C ADP 905 1_555 Y BE BEF . C BEF 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? 
metalc ? metalc15 D OG1 THR 262 D THR 262 1_555 FA MG MG . D MG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc16 D OG1 THR 535 D THR 535 1_555 CA MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc17 AA O3B ADP . D ADP 901 1_555 BA BE BEF . D BEF 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? 
metalc ? metalc18 DA O3B ADP . D ADP 904 1_555 EA BE BEF . D BEF 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? 
metalc ? metalc19 DA O2B ADP . D ADP 904 1_555 FA MG MG . D MG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6OPC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 4 ADP A 1 901 901 ADP ADP . 
J 5 BEF A 1 902 902 BEF BEF . 
K 6 MG A 1 903 903 MG MG . 
L 4 ADP A 1 904 951 ADP ADP . 
M 5 BEF A 1 905 952 BEF BEF . 
N 6 MG A 1 906 953 MG MG . 
O 4 ADP B 1 901 901 ADP ADP . 
P 6 MG B 1 902 903 MG MG . 
Q 4 ADP B 1 903 951 ADP ADP . 
R 5 BEF B 1 904 952 BEF BEF . 
S 6 MG B 1 905 953 MG MG . 
T 5 BEF C 1 901 902 BEF BEF . 
U 4 ADP C 1 902 901 ADP ADP . 
V 5 BEF C 1 903 902 BEF BEF . 
W 6 MG C 1 904 903 MG MG . 
X 4 ADP C 1 905 951 ADP ADP . 
Y 5 BEF C 1 906 952 BEF BEF . 
Z 6 MG C 1 907 953 MG MG . 
AA 4 ADP D 1 901 901 ADP ADP . 
BA 5 BEF D 1 902 902 BEF BEF . 
CA 6 MG D 1 903 903 MG MG . 
DA 4 ADP D 1 904 951 ADP ADP . 
EA 5 BEF D 1 905 952 BEF BEF . 
FA 6 MG D 1 906 953 MG MG . 
GA 4 ADP E 1 901 901 ADP ADP . 
HA 4 ADP E 1 902 951 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . I 4 122.872 139.868 173.349 1 61.26 ? PB ADP 901 A 1 
HETATM 2 O O1B ADP . . . I 4 122.485 140.842 172.157 1 61.26 ? O1B ADP 901 A 1 
HETATM 3 O O2B ADP . . . I 4 122.043 138.647 173.432 1 61.26 ? O2B ADP 901 A 1 
HETATM 4 O O3B ADP . . . I 4 124.356 139.53 173.132 1 61.26 ? O3B ADP 901 A 1 
HETATM 5 P PA ADP . . . I 4 123.498 140.88 175.965 1 61.26 ? PA ADP 901 A 1 
HETATM 6 O O1A ADP . . . I 4 124.676 141.831 175.696 1 61.26 ? O1A ADP 901 A 1 
HETATM 7 O O2A ADP . . . I 4 123.933 139.521 176.35 1 61.26 ? O2A ADP 901 A 1 
HETATM 8 O O3A ADP . . . I 4 122.662 140.779 174.627 1 61.26 ? O3A ADP 901 A 1 
HETATM 9 O O5' ADP . . . I 4 122.456 141.564 176.917 1 61.26 ? O5' ADP 901 A 1 
HETATM 10 C C5' ADP . . . I 4 122.762 142.826 177.538 1 61.26 ? C5' ADP 901 A 1 
HETATM 11 C C4' ADP . . . I 4 121.906 142.948 178.765 1 61.26 ? C4' ADP 901 A 1 
HETATM 12 O O4' ADP . . . I 4 120.77 142.067 178.631 1 61.26 ? O4' ADP 901 A 1 
HETATM 13 C C3' ADP . . . I 4 122.606 142.577 180.079 1 61.26 ? C3' ADP 901 A 1 
HETATM 14 O O3' ADP . . . I 4 122.556 143.656 181.005 1 61.26 ? O3' ADP 901 A 1 
HETATM 15 C C2' ADP . . . I 4 121.847 141.347 180.586 1 61.26 ? C2' ADP 901 A 1 
HETATM 16 O O2' ADP . . . I 4 121.724 141.357 181.995 1 61.26 ? O2' ADP 901 A 1 
HETATM 17 C C1' ADP . . . I 4 120.498 141.454 179.873 1 61.26 ? C1' ADP 901 A 1 
HETATM 18 N N9 ADP . . . I 4 119.89 140.169 179.57 1 61.26 ? N9 ADP 901 A 1 
HETATM 19 C C8 ADP . . . I 4 119.599 139.691 178.321 1 61.26 ? C8 ADP 901 A 1 
HETATM 20 N N7 ADP . . . I 4 119.056 138.499 178.318 1 61.26 ? N7 ADP 901 A 1 
HETATM 21 C C5 ADP . . . I 4 118.986 138.167 179.661 1 61.26 ? C5 ADP 901 A 1 
HETATM 22 C C6 ADP . . . I 4 118.51 137.03 180.336 1 61.26 ? C6 ADP 901 A 1 
HETATM 23 N N6 ADP . . . I 4 117.988 135.965 179.717 1 61.26 ? N6 ADP 901 A 1 
HETATM 24 N N1 ADP . . . I 4 118.584 137.018 181.69 1 61.26 ? N1 ADP 901 A 1 
HETATM 25 C C2 ADP . . . I 4 119.106 138.08 182.324 1 61.26 ? C2 ADP 901 A 1 
HETATM 26 N N3 ADP . . . I 4 119.586 139.207 181.786 1 61.26 ? N3 ADP 901 A 1 
HETATM 27 C C4 ADP . . . I 4 119.498 139.189 180.449 1 61.26 ? C4 ADP 901 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#