data_6OPG # _model_server_result.job_id 3Swrp7F41lid0wsqtKPVKA _model_server_result.datetime_utc '2024-11-12 20:49:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6opg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6OPG # _exptl.entry_id 6OPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OPG _cell.length_a 41.85 _cell.length_b 77.15 _cell.length_c 152.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 178 A LEU 182 1_555 A N TPO 179 A TPO 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C TPO 179 A TPO 183 1_555 A N GLU 180 A GLU 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C GLU 180 A GLU 184 1_555 A N PTR 181 A PTR 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C PTR 181 A PTR 185 1_555 A N VAL 182 A VAL 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? metalc ? metalc1 A OD1 ASN 148 A ASN 152 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 A OD1 ASP 161 A ASP 165 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc3 A OD2 ASP 161 A ASP 165 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 B O3G ANP . A ANP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc5 B O2B ANP . A ANP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc6 B O2A ANP . A ANP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6OPG _atom_sites.fract_transf_matrix[1][1] 0.023895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 1 ANP ANP . C 3 MG A 1 402 1 MG MG . D 3 MG A 1 403 2 MG MG . E 4 HOH A 1 501 129 HOH HOH . E 4 HOH A 2 502 8 HOH HOH . E 4 HOH A 3 503 49 HOH HOH . E 4 HOH A 4 504 86 HOH HOH . E 4 HOH A 5 505 111 HOH HOH . E 4 HOH A 6 506 26 HOH HOH . E 4 HOH A 7 507 62 HOH HOH . E 4 HOH A 8 508 81 HOH HOH . E 4 HOH A 9 509 126 HOH HOH . E 4 HOH A 10 510 64 HOH HOH . E 4 HOH A 11 511 18 HOH HOH . E 4 HOH A 12 512 136 HOH HOH . E 4 HOH A 13 513 42 HOH HOH . E 4 HOH A 14 514 29 HOH HOH . E 4 HOH A 15 515 128 HOH HOH . E 4 HOH A 16 516 13 HOH HOH . E 4 HOH A 17 517 16 HOH HOH . E 4 HOH A 18 518 88 HOH HOH . E 4 HOH A 19 519 24 HOH HOH . E 4 HOH A 20 520 148 HOH HOH . E 4 HOH A 21 521 23 HOH HOH . E 4 HOH A 22 522 69 HOH HOH . E 4 HOH A 23 523 52 HOH HOH . E 4 HOH A 24 524 108 HOH HOH . E 4 HOH A 25 525 31 HOH HOH . E 4 HOH A 26 526 60 HOH HOH . E 4 HOH A 27 527 102 HOH HOH . E 4 HOH A 28 528 7 HOH HOH . E 4 HOH A 29 529 59 HOH HOH . E 4 HOH A 30 530 144 HOH HOH . E 4 HOH A 31 531 67 HOH HOH . E 4 HOH A 32 532 65 HOH HOH . E 4 HOH A 33 533 84 HOH HOH . E 4 HOH A 34 534 37 HOH HOH . E 4 HOH A 35 535 121 HOH HOH . E 4 HOH A 36 536 19 HOH HOH . E 4 HOH A 37 537 116 HOH HOH . E 4 HOH A 38 538 127 HOH HOH . E 4 HOH A 39 539 50 HOH HOH . E 4 HOH A 40 540 35 HOH HOH . E 4 HOH A 41 541 53 HOH HOH . E 4 HOH A 42 542 140 HOH HOH . E 4 HOH A 43 543 120 HOH HOH . E 4 HOH A 44 544 143 HOH HOH . E 4 HOH A 45 545 33 HOH HOH . E 4 HOH A 46 546 44 HOH HOH . E 4 HOH A 47 547 103 HOH HOH . E 4 HOH A 48 548 72 HOH HOH . E 4 HOH A 49 549 30 HOH HOH . E 4 HOH A 50 550 134 HOH HOH . E 4 HOH A 51 551 135 HOH HOH . E 4 HOH A 52 552 109 HOH HOH . E 4 HOH A 53 553 11 HOH HOH . E 4 HOH A 54 554 87 HOH HOH . E 4 HOH A 55 555 48 HOH HOH . E 4 HOH A 56 556 158 HOH HOH . E 4 HOH A 57 557 14 HOH HOH . E 4 HOH A 58 558 4 HOH HOH . E 4 HOH A 59 559 10 HOH HOH . E 4 HOH A 60 560 92 HOH HOH . E 4 HOH A 61 561 159 HOH HOH . E 4 HOH A 62 562 131 HOH HOH . E 4 HOH A 63 563 21 HOH HOH . E 4 HOH A 64 564 80 HOH HOH . E 4 HOH A 65 565 3 HOH HOH . E 4 HOH A 66 566 77 HOH HOH . E 4 HOH A 67 567 20 HOH HOH . E 4 HOH A 68 568 142 HOH HOH . E 4 HOH A 69 569 89 HOH HOH . E 4 HOH A 70 570 104 HOH HOH . E 4 HOH A 71 571 124 HOH HOH . E 4 HOH A 72 572 123 HOH HOH . E 4 HOH A 73 573 43 HOH HOH . E 4 HOH A 74 574 6 HOH HOH . E 4 HOH A 75 575 55 HOH HOH . E 4 HOH A 76 576 25 HOH HOH . E 4 HOH A 77 577 17 HOH HOH . E 4 HOH A 78 578 12 HOH HOH . E 4 HOH A 79 579 75 HOH HOH . E 4 HOH A 80 580 155 HOH HOH . E 4 HOH A 81 581 47 HOH HOH . E 4 HOH A 82 582 138 HOH HOH . E 4 HOH A 83 583 36 HOH HOH . E 4 HOH A 84 584 1 HOH HOH . E 4 HOH A 85 585 32 HOH HOH . E 4 HOH A 86 586 157 HOH HOH . E 4 HOH A 87 587 28 HOH HOH . E 4 HOH A 88 588 113 HOH HOH . E 4 HOH A 89 589 40 HOH HOH . E 4 HOH A 90 590 98 HOH HOH . E 4 HOH A 91 591 156 HOH HOH . E 4 HOH A 92 592 27 HOH HOH . E 4 HOH A 93 593 9 HOH HOH . E 4 HOH A 94 594 74 HOH HOH . E 4 HOH A 95 595 54 HOH HOH . E 4 HOH A 96 596 90 HOH HOH . E 4 HOH A 97 597 100 HOH HOH . E 4 HOH A 98 598 107 HOH HOH . E 4 HOH A 99 599 2 HOH HOH . E 4 HOH A 100 600 63 HOH HOH . E 4 HOH A 101 601 105 HOH HOH . E 4 HOH A 102 602 137 HOH HOH . E 4 HOH A 103 603 70 HOH HOH . E 4 HOH A 104 604 66 HOH HOH . E 4 HOH A 105 605 15 HOH HOH . E 4 HOH A 106 606 51 HOH HOH . E 4 HOH A 107 607 110 HOH HOH . E 4 HOH A 108 608 130 HOH HOH . E 4 HOH A 109 609 76 HOH HOH . E 4 HOH A 110 610 122 HOH HOH . E 4 HOH A 111 611 133 HOH HOH . E 4 HOH A 112 612 58 HOH HOH . E 4 HOH A 113 613 38 HOH HOH . E 4 HOH A 114 614 56 HOH HOH . E 4 HOH A 115 615 114 HOH HOH . E 4 HOH A 116 616 154 HOH HOH . E 4 HOH A 117 617 152 HOH HOH . E 4 HOH A 118 618 78 HOH HOH . E 4 HOH A 119 619 119 HOH HOH . E 4 HOH A 120 620 85 HOH HOH . E 4 HOH A 121 621 145 HOH HOH . E 4 HOH A 122 622 115 HOH HOH . E 4 HOH A 123 623 97 HOH HOH . E 4 HOH A 124 624 79 HOH HOH . E 4 HOH A 125 625 150 HOH HOH . E 4 HOH A 126 626 95 HOH HOH . E 4 HOH A 127 627 5 HOH HOH . E 4 HOH A 128 628 91 HOH HOH . E 4 HOH A 129 629 82 HOH HOH . E 4 HOH A 130 630 125 HOH HOH . E 4 HOH A 131 631 45 HOH HOH . E 4 HOH A 132 632 68 HOH HOH . E 4 HOH A 133 633 39 HOH HOH . E 4 HOH A 134 634 94 HOH HOH . E 4 HOH A 135 635 41 HOH HOH . E 4 HOH A 136 636 99 HOH HOH . E 4 HOH A 137 637 141 HOH HOH . E 4 HOH A 138 638 101 HOH HOH . E 4 HOH A 139 639 139 HOH HOH . E 4 HOH A 140 640 93 HOH HOH . E 4 HOH A 141 641 83 HOH HOH . E 4 HOH A 142 642 61 HOH HOH . E 4 HOH A 143 643 153 HOH HOH . E 4 HOH A 144 644 46 HOH HOH . E 4 HOH A 145 645 106 HOH HOH . E 4 HOH A 146 646 34 HOH HOH . E 4 HOH A 147 647 149 HOH HOH . E 4 HOH A 148 648 118 HOH HOH . E 4 HOH A 149 649 147 HOH HOH . E 4 HOH A 150 650 57 HOH HOH . E 4 HOH A 151 651 22 HOH HOH . E 4 HOH A 152 652 96 HOH HOH . E 4 HOH A 153 653 73 HOH HOH . E 4 HOH A 154 654 117 HOH HOH . E 4 HOH A 155 655 151 HOH HOH . E 4 HOH A 156 656 132 HOH HOH . E 4 HOH A 157 657 146 HOH HOH . E 4 HOH A 158 658 112 HOH HOH . E 4 HOH A 159 659 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 12.655 13.662 19.747 1 55.91 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 12.018 15.015 20.02 1 52.63 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 14.017 13.48 20.38 1 51.6 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 11.583 12.821 20.357 1 51.05 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 11.529 13.114 17.071 1 57.75 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 11.942 12.025 16.111 1 55.6 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 10.197 12.997 17.779 1 48.13 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 12.786 13.332 18.144 1 56.37 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 10.859 15.898 15.978 1 49.76 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 9.49 15.983 15.346 1 46.73 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 11.018 16.488 17.343 1 55.93 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 11.475 14.408 16.088 1 53.05 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 11.925 16.519 14.962 1 45.1 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 13.319 16.529 15.334 1 47.51 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 13.856 17.886 14.972 1 48.71 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 13.475 18.19 13.602 1 48.85 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 13.27 19.058 15.762 1 50.17 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 13.79 19.104 17.089 1 45.48 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 13.603 20.218 14.813 1 47.31 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 14.949 20.601 15.005 1 43.72 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 13.333 19.588 13.439 1 45 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 12.011 19.795 12.833 1 43.26 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 10.907 18.978 12.986 1 49.77 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 9.855 19.405 12.318 1 47.47 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 10.294 20.564 11.698 1 39.75 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 9.631 21.481 10.881 1 41.75 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 8.346 21.348 10.544 1 43.39 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 10.34 22.559 10.459 1 41.85 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 11.617 22.673 10.832 1 39.55 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 12.348 21.852 11.572 1 43.07 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 11.616 20.811 11.995 1 41.41 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #