data_6OPH # _model_server_result.job_id woQsoUTTpilE3IiATpQIGg _model_server_result.datetime_utc '2024-11-18 04:47:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6OPH # _exptl.entry_id 6OPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.858 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(1~{S})-1-(4-chloranyl-3-fluoranyl-phenyl)-2-oxidanyl-ethyl]-4-[2-[(2-methylpyrazol-3-yl)amino]pyrimidin-4-yl]pyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OPH _cell.length_a 42.07 _cell.length_b 76.93 _cell.length_c 151.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 178 A LEU 182 1_555 A N TPO 179 A TPO 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 179 A TPO 183 1_555 A N GLU 180 A GLU 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C GLU 180 A GLU 184 1_555 A N PTR 181 A PTR 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C PTR 181 A PTR 185 1_555 A N VAL 182 A VAL 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C21 H18 Cl F N6 O2' _chem_comp.formula_weight 440.858 _chem_comp.id 6QB _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(1~{S})-1-(4-chloranyl-3-fluoranyl-phenyl)-2-oxidanyl-ethyl]-4-[2-[(2-methylpyrazol-3-yl)amino]pyrimidin-4-yl]pyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 6QB sing 1 n n N2 C3 6QB sing 2 n y N2 N6 6QB sing 3 n y N7 C3 6QB sing 4 n n N7 C8 6QB sing 5 n n N9 C8 6QB doub 6 n y N9 C10 6QB sing 7 n y C3 C4 6QB doub 8 n y N6 C5 6QB doub 9 n y C8 N13 6QB sing 10 n y C10 C11 6QB doub 11 n y N13 C12 6QB doub 12 n y C11 C12 6QB sing 13 n y C5 C4 6QB sing 14 n y C12 C14 6QB sing 15 n n C14 C15 6QB sing 16 n n C14 C20 6QB doub 17 n n C15 C16 6QB doub 18 n n F31 C29 6QB sing 19 n n C20 C18 6QB sing 20 n n C16 N17 6QB sing 21 n n C29 C30 6QB doub 22 n y C29 C28 6QB sing 23 n y C18 N17 6QB sing 24 n n C18 O19 6QB doub 25 n n C30 C25 6QB sing 26 n y N17 C21 6QB sing 27 n n CL1 C28 6QB sing 28 n n C28 C27 6QB doub 29 n y C25 C21 6QB sing 30 n n C25 C26 6QB doub 31 n y C21 C23 6QB sing 32 n n C27 C26 6QB sing 33 n y C23 O24 6QB sing 34 n n C4 H1 6QB sing 35 n n C5 H2 6QB sing 36 n n C10 H3 6QB sing 37 n n C15 H4 6QB sing 38 n n C20 H5 6QB sing 39 n n C21 H6 6QB sing 40 n n C26 H7 6QB sing 41 n n C1 H8 6QB sing 42 n n C1 H9 6QB sing 43 n n C1 H10 6QB sing 44 n n N7 H11 6QB sing 45 n n C11 H12 6QB sing 46 n n C16 H13 6QB sing 47 n n C23 H14 6QB sing 48 n n C23 H15 6QB sing 49 n n O24 H16 6QB sing 50 n n C27 H17 6QB sing 51 n n C30 H18 6QB sing 52 n n # _atom_sites.entry_id 6OPH _atom_sites.fract_transf_matrix[1][1] 0.02377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6QB A 1 401 1 6QB SM1 . C 3 HOH A 1 501 4 HOH HOH . C 3 HOH A 2 502 5 HOH HOH . C 3 HOH A 3 503 1 HOH HOH . C 3 HOH A 4 504 14 HOH HOH . C 3 HOH A 5 505 3 HOH HOH . C 3 HOH A 6 506 7 HOH HOH . C 3 HOH A 7 507 8 HOH HOH . C 3 HOH A 8 508 13 HOH HOH . C 3 HOH A 9 509 10 HOH HOH . C 3 HOH A 10 510 11 HOH HOH . C 3 HOH A 11 511 17 HOH HOH . C 3 HOH A 12 512 9 HOH HOH . C 3 HOH A 13 513 6 HOH HOH . C 3 HOH A 14 514 2 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6QB . . . B 2 14.204 21.96 12.931 1 56.14 ? C4 6QB 401 A 1 HETATM 2 C C5 6QB . . . B 2 15.566 22.162 13.213 1 59.43 ? C5 6QB 401 A 1 HETATM 3 C C8 6QB . . . B 2 11.71 21.695 11.072 1 45.26 ? C8 6QB 401 A 1 HETATM 4 C C10 6QB . . . B 2 9.564 21.267 10.497 1 40.39 ? C10 6QB 401 A 1 HETATM 5 C C15 6QB . . . B 2 11.973 18.684 13.896 1 51.04 ? C15 6QB 401 A 1 HETATM 6 C C20 6QB . . . B 2 9.681 17.983 13.495 1 51.44 ? C20 6QB 401 A 1 HETATM 7 C C21 6QB . . . B 2 11.091 15.981 16.367 1 61.91 ? C21 6QB 401 A 1 HETATM 8 C C26 6QB . . . B 2 10.584 13.549 16.591 1 68.91 ? C26 6QB 401 A 1 HETATM 9 C C28 6QB . . . B 2 11.743 11.841 15.326 1 78.11 ? C28 6QB 401 A 1 HETATM 10 C C1 6QB . . . B 2 15.646 23.577 9.925 1 46.91 ? C1 6QB 401 A 1 HETATM 11 N N2 6QB . . . B 2 15.271 22.962 11.201 1 57.98 ? N2 6QB 401 A 1 HETATM 12 C C3 6QB . . . B 2 14.054 22.468 11.644 1 50.94 ? C3 6QB 401 A 1 HETATM 13 N N6 6QB . . . B 2 16.191 22.759 12.195 1 56.7 ? N6 6QB 401 A 1 HETATM 14 N N7 6QB . . . B 2 12.857 22.488 10.929 1 47.33 ? N7 6QB 401 A 1 HETATM 15 N N9 6QB . . . B 2 10.641 22.045 10.35 1 43.95 ? N9 6QB 401 A 1 HETATM 16 C C11 6QB . . . B 2 9.525 20.151 11.358 1 39.93 ? C11 6QB 401 A 1 HETATM 17 C C12 6QB . . . B 2 10.694 19.86 12.087 1 44.29 ? C12 6QB 401 A 1 HETATM 18 N N13 6QB . . . B 2 11.741 20.67 11.936 1 40.84 ? N13 6QB 401 A 1 HETATM 19 C C14 6QB . . . B 2 10.792 18.785 13.142 1 47.95 ? C14 6QB 401 A 1 HETATM 20 C C16 6QB . . . B 2 12.028 17.742 14.933 1 53.4 ? C16 6QB 401 A 1 HETATM 21 N N17 6QB . . . B 2 10.937 16.934 15.236 1 58.16 ? N17 6QB 401 A 1 HETATM 22 C C18 6QB . . . B 2 9.741 17.033 14.53 1 54.06 ? C18 6QB 401 A 1 HETATM 23 O O19 6QB . . . B 2 8.758 16.325 14.763 1 52.45 ? O19 6QB 401 A 1 HETATM 24 C C23 6QB . . . B 2 12.353 16.296 17.212 1 65.32 ? C23 6QB 401 A 1 HETATM 25 O O24 6QB . . . B 2 12.135 17.229 18.216 1 79.56 ? O24 6QB 401 A 1 HETATM 26 C C25 6QB . . . B 2 11.317 14.557 15.944 1 59.95 ? C25 6QB 401 A 1 HETATM 27 C C27 6QB . . . B 2 10.775 12.184 16.287 1 65.59 ? C27 6QB 401 A 1 HETATM 28 C C29 6QB . . . B 2 12.496 12.865 14.712 1 69.78 ? C29 6QB 401 A 1 HETATM 29 C C30 6QB . . . B 2 12.325 14.229 15.02 1 60.81 ? C30 6QB 401 A 1 HETATM 30 F F31 6QB . . . B 2 13.399 12.51 13.82 1 72.35 ? F31 6QB 401 A 1 HETATM 31 CL CL1 6QB . . . B 2 11.994 10.167 14.952 1 106.94 ? CL1 6QB 401 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #