data_6OPI # _model_server_result.job_id llYhSHoGFM8r4OHpKYjWgg _model_server_result.datetime_utc '2024-11-23 20:26:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6opi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6OPI # _exptl.entry_id 6OPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 668.787 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-N-[3-(2-cyclopropylpyridin-4-yl)-1H-indazol-5-yl]-3-(methoxymethyl)-1-(2-oxo-2-{4-[4-(pyrimidin-2-yl)phenyl]-3,6-dihydropyridin-1(2H)-yl}ethyl)pyrrolidine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OPI _cell.length_a 41.394 _cell.length_b 77.64 _cell.length_c 126.536 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C39 H40 N8 O3' _chem_comp.formula_weight 668.787 _chem_comp.id N0V _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-N-[3-(2-cyclopropylpyridin-4-yl)-1H-indazol-5-yl]-3-(methoxymethyl)-1-(2-oxo-2-{4-[4-(pyrimidin-2-yl)phenyl]-3,6-dihydropyridin-1(2H)-yl}ethyl)pyrrolidine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 N8 N0V sing 237 n y N7 C1 N0V sing 238 n y N8 C9 N0V doub 239 n y C45 N44 N0V doub 240 n y C45 C46 N0V sing 241 n y C1 C6 N0V doub 242 n y C1 C2 N0V sing 243 n y C6 C5 N0V sing 244 n y N44 C43 N0V sing 245 n y C11 C12 N0V doub 246 n y C11 C10 N0V sing 247 n y C9 C2 N0V sing 248 n y C9 C10 N0V sing 249 n n C12 N13 N0V sing 250 n y O30 C29 N0V doub 251 n n C39 C38 N0V doub 252 n y C39 C40 N0V sing 253 n y C2 C3 N0V doub 254 n y C33 C32 N0V sing 255 n n C33 C34 N0V sing 256 n n C5 C4 N0V doub 257 n y C38 C37 N0V sing 258 n y C10 C15 N0V doub 259 n y C46 C47 N0V doub 260 n y C32 N31 N0V sing 261 n n C43 C40 N0V sing 262 n n C43 N48 N0V doub 263 n y C3 C4 N0V sing 264 n y C4 N19 N0V sing 265 n n C40 C41 N0V doub 266 n y C25 C26 N0V sing 267 n n C25 N24 N0V sing 268 n n N13 C14 N0V doub 269 n y C29 N31 N0V sing 270 n n C29 C28 N0V sing 271 n n C37 C34 N0V sing 272 n n C37 C42 N0V doub 273 n y C26 C21 N0V sing 274 n n C15 C14 N0V sing 275 n y N31 C36 N0V sing 276 n n N19 C20 N0V sing 277 n n C34 C35 N0V doub 278 n n C47 N48 N0V sing 279 n y O22 C20 N0V doub 280 n n C14 C16 N0V sing 281 n n C41 C42 N0V sing 282 n y C28 N24 N0V sing 283 n n C20 C21 N0V sing 284 n n N24 C23 N0V sing 285 n n C21 C23 N0V sing 286 n n C21 C27 N0V sing 287 n n C35 C36 N0V sing 288 n n C17 C16 N0V sing 289 n n C17 C18 N0V sing 290 n n C16 C18 N0V sing 291 n n C27 O49 N0V sing 292 n n O49 C50 N0V sing 293 n n C18 H1 N0V sing 294 n n C18 H2 N0V sing 295 n n C12 H3 N0V sing 296 n n C17 H4 N0V sing 297 n n C17 H5 N0V sing 298 n n C16 H6 N0V sing 299 n n C15 H7 N0V sing 300 n n C11 H8 N0V sing 301 n n C5 H9 N0V sing 302 n n C6 H10 N0V sing 303 n n C3 H12 N0V sing 304 n n N7 H13 N0V sing 305 n n N19 H14 N0V sing 306 n n C23 H16 N0V sing 307 n n C23 H17 N0V sing 308 n n C25 H19 N0V sing 309 n n C25 H20 N0V sing 310 n n C26 H21 N0V sing 311 n n C26 H22 N0V sing 312 n n C27 H23 N0V sing 313 n n C27 H24 N0V sing 314 n n C28 H25 N0V sing 315 n n C28 H26 N0V sing 316 n n C32 H27 N0V sing 317 n n C32 H28 N0V sing 318 n n C33 H29 N0V sing 319 n n C33 H30 N0V sing 320 n n C35 H32 N0V sing 321 n n C36 H34 N0V sing 322 n n C36 H35 N0V sing 323 n n C38 H36 N0V sing 324 n n C39 H37 N0V sing 325 n n C41 H38 N0V sing 326 n n C42 H39 N0V sing 327 n n C45 H40 N0V sing 328 n n C46 H41 N0V sing 329 n n C47 H42 N0V sing 330 n n C50 H43 N0V sing 331 n n C50 H44 N0V sing 332 n n C50 H45 N0V sing 333 n n # _atom_sites.entry_id 6OPI _atom_sites.fract_transf_matrix[1][1] 0.024158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N0V A 1 401 1 N0V SM1 . C 3 HOH A 1 501 26 HOH HOH . C 3 HOH A 2 502 28 HOH HOH . C 3 HOH A 3 503 25 HOH HOH . C 3 HOH A 4 504 27 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 21 HOH HOH . C 3 HOH A 7 507 13 HOH HOH . C 3 HOH A 8 508 23 HOH HOH . C 3 HOH A 9 509 24 HOH HOH . C 3 HOH A 10 510 20 HOH HOH . C 3 HOH A 11 511 12 HOH HOH . C 3 HOH A 12 512 3 HOH HOH . C 3 HOH A 13 513 30 HOH HOH . C 3 HOH A 14 514 19 HOH HOH . C 3 HOH A 15 515 29 HOH HOH . C 3 HOH A 16 516 17 HOH HOH . C 3 HOH A 17 517 4 HOH HOH . C 3 HOH A 18 518 2 HOH HOH . C 3 HOH A 19 519 10 HOH HOH . C 3 HOH A 20 520 16 HOH HOH . C 3 HOH A 21 521 11 HOH HOH . C 3 HOH A 22 522 1 HOH HOH . C 3 HOH A 23 523 8 HOH HOH . C 3 HOH A 24 524 22 HOH HOH . C 3 HOH A 25 525 18 HOH HOH . C 3 HOH A 26 526 9 HOH HOH . C 3 HOH A 27 527 6 HOH HOH . C 3 HOH A 28 528 7 HOH HOH . C 3 HOH A 29 529 14 HOH HOH . C 3 HOH A 30 530 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 N0V . . . B 2 -6.877 -17.596 -48.066 1 35.55 ? C18 N0V 401 A 1 HETATM 2 C C14 N0V . . . B 2 -4.637 -18.187 -49.304 1 38.35 ? C14 N0V 401 A 1 HETATM 3 C C12 N0V . . . B 2 -4.704 -19.646 -51.116 1 31.83 ? C12 N0V 401 A 1 HETATM 4 C C17 N0V . . . B 2 -6.087 -16.301 -48.103 1 35.88 ? C17 N0V 401 A 1 HETATM 5 C C16 N0V . . . B 2 -5.378 -17.647 -48.094 1 39.21 ? C16 N0V 401 A 1 HETATM 6 C C15 N0V . . . B 2 -3.333 -17.744 -49.681 1 34.79 ? C15 N0V 401 A 1 HETATM 7 C C11 N0V . . . B 2 -3.418 -19.272 -51.556 1 31.43 ? C11 N0V 401 A 1 HETATM 8 C C10 N0V . . . B 2 -2.714 -18.28 -50.834 1 33.07 ? C10 N0V 401 A 1 HETATM 9 C C5 N0V . . . B 2 1.508 -14.91 -50.905 1 35.41 ? C5 N0V 401 A 1 HETATM 10 C C6 N0V . . . B 2 1.742 -16.126 -51.586 1 33.21 ? C6 N0V 401 A 1 HETATM 11 C C1 N0V . . . B 2 0.67 -17.028 -51.591 1 31.75 ? C1 N0V 401 A 1 HETATM 12 C C4 N0V . . . B 2 0.263 -14.637 -50.286 1 37.13 ? C4 N0V 401 A 1 HETATM 13 C C20 N0V . . . B 2 1.104 -12.749 -48.962 1 34.42 ? C20 N0V 401 A 1 HETATM 14 C C21 N0V . . . B 2 0.587 -11.395 -48.547 1 35.17 ? C21 N0V 401 A 1 HETATM 15 C C2 N0V . . . B 2 -0.549 -16.752 -50.978 1 33.62 ? C2 N0V 401 A 1 HETATM 16 C C3 N0V . . . B 2 -0.818 -15.546 -50.298 1 36.09 ? C3 N0V 401 A 1 HETATM 17 N N7 N0V . . . B 2 0.631 -18.262 -52.169 1 32.25 ? N7 N0V 401 A 1 HETATM 18 N N8 N0V . . . B 2 -0.624 -18.79 -51.92 1 36.14 ? N8 N0V 401 A 1 HETATM 19 C C9 N0V . . . B 2 -1.353 -17.914 -51.223 1 34.25 ? C9 N0V 401 A 1 HETATM 20 N N13 N0V . . . B 2 -5.298 -19.115 -50.026 1 34.6 ? N13 N0V 401 A 1 HETATM 21 N N19 N0V . . . B 2 0.134 -13.409 -49.626 1 40.82 ? N19 N0V 401 A 1 HETATM 22 O O22 N0V . . . B 2 2.244 -12.722 -49.388 1 29.24 ? O22 N0V 401 A 1 HETATM 23 C C23 N0V . . . B 2 1.77 -10.687 -47.906 1 34.82 ? C23 N0V 401 A 1 HETATM 24 N N24 N0V . . . B 2 2.189 -9.66 -48.902 1 32.13 ? N24 N0V 401 A 1 HETATM 25 C C25 N0V . . . B 2 1.32 -9.708 -50.087 1 32.03 ? C25 N0V 401 A 1 HETATM 26 C C26 N0V . . . B 2 0.085 -10.513 -49.714 1 33.41 ? C26 N0V 401 A 1 HETATM 27 C C27 N0V . . . B 2 -0.612 -11.66 -47.656 1 38.86 ? C27 N0V 401 A 1 HETATM 28 C C28 N0V . . . B 2 3.615 -9.221 -48.968 1 29.06 ? C28 N0V 401 A 1 HETATM 29 C C29 N0V . . . B 2 3.837 -8.031 -49.898 1 30.32 ? C29 N0V 401 A 1 HETATM 30 O O30 N0V . . . B 2 3.56 -8.254 -51.068 1 28.62 ? O30 N0V 401 A 1 HETATM 31 N N31 N0V . . . B 2 4.65 -6.968 -49.634 1 31.66 ? N31 N0V 401 A 1 HETATM 32 C C32 N0V . . . B 2 5.001 -6.122 -50.777 1 32.43 ? C32 N0V 401 A 1 HETATM 33 C C33 N0V . . . B 2 3.968 -5.009 -50.95 1 37.96 ? C33 N0V 401 A 1 HETATM 34 C C34 N0V . . . B 2 3.426 -4.455 -49.623 1 41.66 ? C34 N0V 401 A 1 HETATM 35 C C35 N0V . . . B 2 3.56 -5.155 -48.475 1 36.04 ? C35 N0V 401 A 1 HETATM 36 C C36 N0V . . . B 2 4.637 -6.221 -48.373 1 32.29 ? C36 N0V 401 A 1 HETATM 37 C C37 N0V . . . B 2 2.457 -3.348 -49.77 1 47.61 ? C37 N0V 401 A 1 HETATM 38 C C38 N0V . . . B 2 2.53 -2.497 -50.905 1 51.56 ? C38 N0V 401 A 1 HETATM 39 C C39 N0V . . . B 2 1.57 -1.454 -51.056 1 57.96 ? C39 N0V 401 A 1 HETATM 40 C C40 N0V . . . B 2 0.533 -1.203 -50.112 1 53.73 ? C40 N0V 401 A 1 HETATM 41 C C41 N0V . . . B 2 0.471 -2.061 -48.983 1 48.99 ? C41 N0V 401 A 1 HETATM 42 C C42 N0V . . . B 2 1.423 -3.108 -48.829 1 47.2 ? C42 N0V 401 A 1 HETATM 43 C C43 N0V . . . B 2 -0.449 -0.166 -50.333 1 52.96 ? C43 N0V 401 A 1 HETATM 44 N N44 N0V . . . B 2 -0.495 0.42 -51.558 1 50.63 ? N44 N0V 401 A 1 HETATM 45 C C45 N0V . . . B 2 -1.423 1.381 -51.802 1 55.92 ? C45 N0V 401 A 1 HETATM 46 C C46 N0V . . . B 2 -2.372 1.756 -50.808 1 57.41 ? C46 N0V 401 A 1 HETATM 47 C C47 N0V . . . B 2 -2.299 1.09 -49.558 1 51.6 ? C47 N0V 401 A 1 HETATM 48 N N48 N0V . . . B 2 -1.356 0.137 -49.361 1 51.58 ? N48 N0V 401 A 1 HETATM 49 O O49 N0V . . . B 2 -0.155 -12.43 -46.597 1 44.74 ? O49 N0V 401 A 1 HETATM 50 C C50 N0V . . . B 2 -0.752 -11.756 -45.49 1 48.62 ? C50 N0V 401 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 50 #