data_6OPK # _model_server_result.job_id zacOhVWY0Qy6HPnqTxd1cA _model_server_result.datetime_utc '2024-11-18 05:33:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6opk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6OPK # _exptl.entry_id 6OPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.352 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{2-[(2-chloro-4-fluorophenyl)amino]-5-methylpyrimidin-4-yl}-N-[(1S)-1-(3-chlorophenyl)-2-hydroxyethyl]-1H-pyrrole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OPK _cell.length_a 41.986 _cell.length_b 78.139 _cell.length_c 152.601 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 176 A LEU 182 1_555 A N TPO 177 A TPO 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C TPO 177 A TPO 183 1_555 A N GLU 178 A GLU 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C GLU 178 A GLU 184 1_555 A N PTR 179 A PTR 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C PTR 179 A PTR 185 1_555 A N VAL 180 A VAL 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C24 H20 Cl2 F N5 O2' _chem_comp.formula_weight 500.352 _chem_comp.id 390 _chem_comp.mon_nstd_flag . _chem_comp.name 4-{2-[(2-chloro-4-fluorophenyl)amino]-5-methylpyrimidin-4-yl}-N-[(1S)-1-(3-chlorophenyl)-2-hydroxyethyl]-1H-pyrrole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C7 390 sing 1 n n C7 C8 390 doub 2 n y C7 C6 390 sing 3 n y C8 C9 390 sing 4 n y C6 C5 390 doub 5 n y C9 CL 390 sing 6 n n C9 C4 390 doub 7 n y C5 C4 390 sing 8 n y C4 N1 390 sing 9 n n C19 C18 390 doub 10 n y C19 C20 390 sing 11 n y N1 C3 390 sing 12 n n C18 C17 390 sing 13 n y C20 C21 390 doub 14 n y C16 O 390 sing 15 n n C16 C15 390 sing 16 n n C23 N4 390 sing 17 n y C23 C11 390 doub 18 n y C17 C15 390 sing 19 n n C17 C22 390 doub 20 n y C21 C22 390 sing 21 n y C21 CL1 390 sing 22 n n N4 C13 390 sing 23 n y N2 C3 390 doub 24 n y N2 C10 390 sing 25 n y N3 C15 390 sing 26 n n N3 C14 390 sing 27 n n C3 N 390 sing 28 n y C11 C10 390 sing 29 n n C11 C12 390 sing 30 n y C13 C14 390 sing 31 n n C13 C12 390 doub 32 n y C10 C1 390 doub 33 n y C14 O1 390 doub 34 n n N C2 390 doub 35 n y C1 C2 390 sing 36 n y C1 C 390 sing 37 n n N3 H1 390 sing 38 n n C15 H2 390 sing 39 n n C22 H3 390 sing 40 n n C20 H4 390 sing 41 n n C19 H5 390 sing 42 n n C18 H6 390 sing 43 n n C16 H7 390 sing 44 n n C16 H8 390 sing 45 n n O H9 390 sing 46 n n C12 H10 390 sing 47 n n N4 H11 390 sing 48 n n C23 H12 390 sing 49 n n C H13 390 sing 50 n n C H14 390 sing 51 n n C H15 390 sing 52 n n C2 H16 390 sing 53 n n N1 H17 390 sing 54 n n C8 H18 390 sing 55 n n C6 H19 390 sing 56 n n C5 H20 390 sing 57 n n # _atom_sites.entry_id 6OPK _atom_sites.fract_transf_matrix[1][1] 0.023817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 390 A 1 401 1 390 SM1 . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 15 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 6 HOH HOH . C 3 HOH A 5 505 9 HOH HOH . C 3 HOH A 6 506 2 HOH HOH . C 3 HOH A 7 507 10 HOH HOH . C 3 HOH A 8 508 16 HOH HOH . C 3 HOH A 9 509 17 HOH HOH . C 3 HOH A 10 510 5 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 8 HOH HOH . C 3 HOH A 13 513 14 HOH HOH . C 3 HOH A 14 514 7 HOH HOH . C 3 HOH A 15 515 18 HOH HOH . C 3 HOH A 16 516 13 HOH HOH . C 3 HOH A 17 517 12 HOH HOH . C 3 HOH A 18 518 19 HOH HOH . C 3 HOH A 19 519 4 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 390 . . . B 2 51.569 15.724 15.078 1 57.01 ? O1 390 401 A 1 HETATM 2 C C14 390 . . . B 2 52.723 16.184 15.046 1 54.46 ? C14 390 401 A 1 HETATM 3 N N3 390 . . . B 2 53.748 15.585 15.62 1 51.27 ? N3 390 401 A 1 HETATM 4 C C15 390 . . . B 2 53.612 14.397 16.416 1 55.72 ? C15 390 401 A 1 HETATM 5 C C17 390 . . . B 2 53.71 13.202 15.545 1 60.4 ? C17 390 401 A 1 HETATM 6 C C22 390 . . . B 2 53.331 11.97 16.085 1 52.02 ? C22 390 401 A 1 HETATM 7 C C21 390 . . . B 2 53.428 10.83 15.295 1 62.28 ? C21 390 401 A 1 HETATM 8 CL CL1 390 . . . B 2 52.925 9.3 15.905 1 71.86 ? CL1 390 401 A 1 HETATM 9 C C20 390 . . . B 2 53.939 10.911 14.005 1 56.98 ? C20 390 401 A 1 HETATM 10 C C19 390 . . . B 2 54.347 12.156 13.53 1 58.95 ? C19 390 401 A 1 HETATM 11 C C18 390 . . . B 2 54.222 13.329 14.255 1 51.89 ? C18 390 401 A 1 HETATM 12 C C16 390 . . . B 2 54.806 14.296 17.324 1 60.11 ? C16 390 401 A 1 HETATM 13 O O 390 . . . B 2 54.372 14.641 18.569 1 57.72 ? O 390 401 A 1 HETATM 14 C C13 390 . . . B 2 53.196 17.397 14.471 1 47.82 ? C13 390 401 A 1 HETATM 15 C C12 390 . . . B 2 52.656 18.089 13.359 1 53.39 ? C12 390 401 A 1 HETATM 16 N N4 390 . . . B 2 54.318 17.98 14.923 1 46.84 ? N4 390 401 A 1 HETATM 17 C C23 390 . . . B 2 54.555 19.114 14.13 1 46.73 ? C23 390 401 A 1 HETATM 18 C C11 390 . . . B 2 53.522 19.194 13.176 1 54.61 ? C11 390 401 A 1 HETATM 19 C C10 390 . . . B 2 53.372 20.279 12.191 1 58.11 ? C10 390 401 A 1 HETATM 20 C C1 390 . . . B 2 52.192 20.468 11.452 1 58.31 ? C1 390 401 A 1 HETATM 21 C C 390 . . . B 2 50.997 19.576 11.516 1 48.7 ? C 390 401 A 1 HETATM 22 N N2 390 . . . B 2 54.445 21.109 12.068 1 60.01 ? N2 390 401 A 1 HETATM 23 C C3 390 . . . B 2 54.292 22.157 11.196 1 62.16 ? C3 390 401 A 1 HETATM 24 N N 390 . . . B 2 53.174 22.439 10.457 1 55.66 ? N 390 401 A 1 HETATM 25 C C2 390 . . . B 2 52.149 21.544 10.567 1 55.51 ? C2 390 401 A 1 HETATM 26 N N1 390 . . . B 2 55.396 23.096 11.045 1 59.43 ? N1 390 401 A 1 HETATM 27 C C4 390 . . . B 2 56.668 22.917 11.75 1 61.88 ? C4 390 401 A 1 HETATM 28 C C9 390 . . . B 2 57.872 23.146 11.077 1 67.64 ? C9 390 401 A 1 HETATM 29 CL CL 390 . . . B 2 57.893 23.6 9.417 1 68.25 ? CL 390 401 A 1 HETATM 30 C C8 390 . . . B 2 59.106 23.016 11.706 1 62.72 ? C8 390 401 A 1 HETATM 31 C C7 390 . . . B 2 59.09 22.62 13.036 1 71.63 ? C7 390 401 A 1 HETATM 32 F F 390 . . . B 2 60.279 22.462 13.636 1 69.16 ? F 390 401 A 1 HETATM 33 C C6 390 . . . B 2 57.893 22.394 13.731 1 57.27 ? C6 390 401 A 1 HETATM 34 C C5 390 . . . B 2 56.677 22.539 13.092 1 54.79 ? C5 390 401 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #