data_6OPY # _model_server_result.job_id NcfRxll6_pYEbyncEfMCkg _model_server_result.datetime_utc '2024-11-17 21:57:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6opy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6OPY # _exptl.entry_id 6OPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 547.664 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OPY _cell.length_a 62.114 _cell.length_b 62.114 _cell.length_c 82.564 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H37 N3 O7 S' _chem_comp.formula_weight 547.664 _chem_comp.id 017 _chem_comp.mon_nstd_flag . _chem_comp.name (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Darunavir;TMC114;UIC-94017 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 017 sing 1 n n N1 H11 017 sing 2 n n N1 H12 017 sing 3 n n C2 C3 017 doub 4 n y C2 C7 017 sing 5 n y C3 C4 017 sing 6 n y C3 H3 017 sing 7 n n C4 C5 017 doub 8 n y C4 H4 017 sing 9 n n C5 C6 017 sing 10 n y C5 S8 017 sing 11 n n C6 C7 017 doub 12 n y C6 H6 017 sing 13 n n C7 H7 017 sing 14 n n S8 O9 017 doub 15 n n S8 O10 017 doub 16 n n S8 N11 017 sing 17 n n N11 C12 017 sing 18 n n N11 C16 017 sing 19 n n C12 C13 017 sing 20 n n C12 H121 017 sing 21 n n C12 H122 017 sing 22 n n C13 C14 017 sing 23 n n C13 C15 017 sing 24 n n C13 H13 017 sing 25 n n C14 H141 017 sing 26 n n C14 H142 017 sing 27 n n C14 H143 017 sing 28 n n C15 H151 017 sing 29 n n C15 H152 017 sing 30 n n C15 H153 017 sing 31 n n C16 C17 017 sing 32 n n C16 H161 017 sing 33 n n C16 H162 017 sing 34 n n C17 O18 017 sing 35 n n C17 C19 017 sing 36 n n C17 H17 017 sing 37 n n O18 H18 017 sing 38 n n C19 N20 017 sing 39 n n C19 C32 017 sing 40 n n C19 H19 017 sing 41 n n N20 C21 017 sing 42 n n N20 H20 017 sing 43 n n C21 O22 017 doub 44 n n C21 O23 017 sing 45 n n O23 C24 017 sing 46 n n C24 C25 017 sing 47 n n C24 C31 017 sing 48 n n C24 H24 017 sing 49 n n C25 O26 017 sing 50 n n C25 H251 017 sing 51 n n C25 H252 017 sing 52 n n O26 C27 017 sing 53 n n C27 O28 017 sing 54 n n C27 C31 017 sing 55 n n C27 H27 017 sing 56 n n O28 C29 017 sing 57 n n C29 C30 017 sing 58 n n C29 H291 017 sing 59 n n C29 H292 017 sing 60 n n C30 C31 017 sing 61 n n C30 H301 017 sing 62 n n C30 H302 017 sing 63 n n C31 H31 017 sing 64 n n C32 C38 017 sing 65 n n C32 H321 017 sing 66 n n C32 H322 017 sing 67 n n C33 C34 017 doub 68 n y C33 C38 017 sing 69 n y C33 H33 017 sing 70 n n C34 C35 017 sing 71 n y C34 H34 017 sing 72 n n C35 C36 017 doub 73 n y C35 H35 017 sing 74 n n C36 C37 017 sing 75 n y C36 H36 017 sing 76 n n C37 C38 017 doub 77 n y C37 H37 017 sing 78 n n # _atom_sites.entry_id 6OPY _atom_sites.fract_transf_matrix[1][1] 0.016099 _atom_sites.fract_transf_matrix[1][2] 0.009295 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 017 A 1 101 1 017 017 . D 3 HOH A 1 201 59 HOH HOH . D 3 HOH A 2 202 4 HOH HOH . D 3 HOH A 3 203 54 HOH HOH . D 3 HOH A 4 204 29 HOH HOH . D 3 HOH A 5 205 5 HOH HOH . D 3 HOH A 6 206 12 HOH HOH . D 3 HOH A 7 207 22 HOH HOH . D 3 HOH A 8 208 45 HOH HOH . D 3 HOH A 9 209 90 HOH HOH . D 3 HOH A 10 210 46 HOH HOH . D 3 HOH A 11 211 44 HOH HOH . D 3 HOH A 12 212 50 HOH HOH . D 3 HOH A 13 213 27 HOH HOH . D 3 HOH A 14 214 57 HOH HOH . D 3 HOH A 15 215 37 HOH HOH . D 3 HOH A 16 216 17 HOH HOH . D 3 HOH A 17 217 80 HOH HOH . D 3 HOH A 18 218 43 HOH HOH . D 3 HOH A 19 219 25 HOH HOH . D 3 HOH A 20 220 18 HOH HOH . D 3 HOH A 21 221 20 HOH HOH . D 3 HOH A 22 222 73 HOH HOH . D 3 HOH A 23 223 60 HOH HOH . D 3 HOH A 24 224 63 HOH HOH . D 3 HOH A 25 225 71 HOH HOH . D 3 HOH A 26 226 76 HOH HOH . D 3 HOH A 27 227 89 HOH HOH . D 3 HOH A 28 228 26 HOH HOH . D 3 HOH A 29 229 53 HOH HOH . D 3 HOH A 30 230 68 HOH HOH . D 3 HOH A 31 231 32 HOH HOH . D 3 HOH A 32 232 70 HOH HOH . D 3 HOH A 33 233 47 HOH HOH . D 3 HOH A 34 234 79 HOH HOH . D 3 HOH A 35 235 31 HOH HOH . D 3 HOH A 36 236 91 HOH HOH . D 3 HOH A 37 237 75 HOH HOH . D 3 HOH A 38 238 77 HOH HOH . D 3 HOH A 39 239 74 HOH HOH . E 3 HOH B 1 101 2 HOH HOH . E 3 HOH B 2 102 40 HOH HOH . E 3 HOH B 3 103 13 HOH HOH . E 3 HOH B 4 104 36 HOH HOH . E 3 HOH B 5 105 15 HOH HOH . E 3 HOH B 6 106 11 HOH HOH . E 3 HOH B 7 107 41 HOH HOH . E 3 HOH B 8 108 14 HOH HOH . E 3 HOH B 9 109 65 HOH HOH . E 3 HOH B 10 110 10 HOH HOH . E 3 HOH B 11 111 55 HOH HOH . E 3 HOH B 12 112 21 HOH HOH . E 3 HOH B 13 113 35 HOH HOH . E 3 HOH B 14 114 7 HOH HOH . E 3 HOH B 15 115 9 HOH HOH . E 3 HOH B 16 116 58 HOH HOH . E 3 HOH B 17 117 42 HOH HOH . E 3 HOH B 18 118 3 HOH HOH . E 3 HOH B 19 119 88 HOH HOH . E 3 HOH B 20 120 64 HOH HOH . E 3 HOH B 21 121 86 HOH HOH . E 3 HOH B 22 122 61 HOH HOH . E 3 HOH B 23 123 24 HOH HOH . E 3 HOH B 24 124 28 HOH HOH . E 3 HOH B 25 125 92 HOH HOH . E 3 HOH B 26 126 51 HOH HOH . E 3 HOH B 27 127 48 HOH HOH . E 3 HOH B 28 128 66 HOH HOH . E 3 HOH B 29 129 85 HOH HOH . E 3 HOH B 30 130 72 HOH HOH . E 3 HOH B 31 131 56 HOH HOH . E 3 HOH B 32 132 84 HOH HOH . E 3 HOH B 33 133 82 HOH HOH . E 3 HOH B 34 134 81 HOH HOH . E 3 HOH B 35 135 30 HOH HOH . E 3 HOH B 36 136 87 HOH HOH . E 3 HOH B 37 137 52 HOH HOH . E 3 HOH B 38 138 83 HOH HOH . E 3 HOH B 39 139 69 HOH HOH . E 3 HOH B 40 140 16 HOH HOH . E 3 HOH B 41 141 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 017 . . . C 2 41.428 37.752 15.256 1 45.1 ? N1 017 101 A 1 HETATM 2 C C2 017 . . . C 2 41.191 38.035 13.799 1 38.77 ? C2 017 101 A 1 HETATM 3 C C3 017 . . . C 2 40.212 37.345 13.134 1 35.41 ? C3 017 101 A 1 HETATM 4 C C4 017 . . . C 2 39.973 37.587 11.805 1 34.46 ? C4 017 101 A 1 HETATM 5 C C5 017 . . . C 2 40.718 38.531 11.111 1 38.71 ? C5 017 101 A 1 HETATM 6 C C6 017 . . . C 2 41.7 39.218 11.773 1 42.15 ? C6 017 101 A 1 HETATM 7 C C7 017 . . . C 2 41.946 38.976 13.125 1 36.65 ? C7 017 101 A 1 HETATM 8 S S8 017 . . . C 2 40.343 38.789 9.316 1 36.27 ? S8 017 101 A 1 HETATM 9 O O9 017 . . . C 2 39.057 38.273 8.952 1 32.84 ? O9 017 101 A 1 HETATM 10 O O10 017 . . . C 2 40.13 40.219 8.985 1 30.76 ? O10 017 101 A 1 HETATM 11 N N11 017 . . . C 2 41.563 38.019 8.355 1 29.38 ? N11 017 101 A 1 HETATM 12 C C12 017 . . . C 2 42.954 38.51 8.481 1 43.66 ? C12 017 101 A 1 HETATM 13 C C13 017 . . . C 2 43.479 39.275 7.257 1 44.56 ? C13 017 101 A 1 HETATM 14 C C14 017 . . . C 2 42.771 40.652 7.056 1 44.29 ? C14 017 101 A 1 HETATM 15 C C15 017 . . . C 2 45.017 39.451 7.415 1 54.15 ? C15 017 101 A 1 HETATM 16 C C16 017 . . . C 2 41.368 36.508 8.096 1 40.18 ? C16 017 101 A 1 HETATM 17 C C17 017 . . . C 2 41.117 36.175 6.587 1 29.49 ? C17 017 101 A 1 HETATM 18 O O18 017 . . . C 2 41.311 34.83 6.377 1 30.91 ? O18 017 101 A 1 HETATM 19 C C19 017 . . . C 2 39.697 36.582 6.199 1 33.79 ? C19 017 101 A 1 HETATM 20 N N20 017 . . . C 2 39.56 36.438 4.758 1 34.13 ? N20 017 101 A 1 HETATM 21 C C21 017 . . . C 2 39.513 37.559 3.799 1 29.95 ? C21 017 101 A 1 HETATM 22 O O22 017 . . . C 2 39.478 38.693 4.15 1 29.75 ? O22 017 101 A 1 HETATM 23 O O23 017 . . . C 2 39.509 37.175 2.45 1 33.72 ? O23 017 101 A 1 HETATM 24 C C24 017 . . . C 2 38.923 37.987 1.459 1 28.11 ? C24 017 101 A 1 HETATM 25 C C25 017 . . . C 2 40.017 37.896 0.199 1 30.75 ? C25 017 101 A 1 HETATM 26 O O26 017 . . . C 2 39.831 36.626 -0.216 1 34.23 ? O26 017 101 A 1 HETATM 27 C C27 017 . . . C 2 38.273 36.366 -0.057 1 27.89 ? C27 017 101 A 1 HETATM 28 O O28 017 . . . C 2 38.033 35.287 0.531 1 28.6 ? O28 017 101 A 1 HETATM 29 C C29 017 . . . C 2 36.769 35.574 1.509 1 27.42 ? C29 017 101 A 1 HETATM 30 C C30 017 . . . C 2 36.865 36.837 1.876 1 34.54 ? C30 017 101 A 1 HETATM 31 C C31 017 . . . C 2 37.799 37.519 0.931 1 28.57 ? C31 017 101 A 1 HETATM 32 C C32 017 . . . C 2 38.646 35.659 6.812 1 25.58 ? C32 017 101 A 1 HETATM 33 C C33 017 . . . C 2 36.732 37.172 6.278 1 31.27 ? C33 017 101 A 1 HETATM 34 C C34 017 . . . C 2 35.483 37.435 5.693 1 31.26 ? C34 017 101 A 1 HETATM 35 C C35 017 . . . C 2 34.812 36.428 4.985 1 29.62 ? C35 017 101 A 1 HETATM 36 C C36 017 . . . C 2 35.359 35.173 4.882 1 28.45 ? C36 017 101 A 1 HETATM 37 C C37 017 . . . C 2 36.604 34.905 5.466 1 36.52 ? C37 017 101 A 1 HETATM 38 C C38 017 . . . C 2 37.285 35.924 6.169 1 27.31 ? C38 017 101 A 1 HETATM 39 H H11 017 . . . C 2 41.921 38.288 15.728 1 54.12 ? H11 017 101 A 1 HETATM 40 H H12 017 . . . C 2 41.072 37.053 15.626 1 54.12 ? H12 017 101 A 1 HETATM 41 H H3 017 . . . C 2 39.707 36.709 13.585 1 42.5 ? H3 017 101 A 1 HETATM 42 H H4 017 . . . C 2 39.305 37.115 11.365 1 41.35 ? H4 017 101 A 1 HETATM 43 H H6 017 . . . C 2 42.206 39.85 11.318 1 50.58 ? H6 017 101 A 1 HETATM 44 H H7 017 . . . C 2 42.614 39.445 13.569 1 43.98 ? H7 017 101 A 1 HETATM 45 H H121 017 . . . C 2 42.995 39.082 9.225 1 52.39 ? H121 017 101 A 1 HETATM 46 H H122 017 . . . C 2 43.513 37.77 8.628 1 52.39 ? H122 017 101 A 1 HETATM 47 H H13 017 . . . C 2 43.286 38.775 6.486 1 53.47 ? H13 017 101 A 1 HETATM 48 H H141 017 . . . C 2 43.408 41.341 7.097 1 53.15 ? H141 017 101 A 1 HETATM 49 H H142 017 . . . C 2 42.131 40.778 7.731 1 53.15 ? H142 017 101 A 1 HETATM 50 H H143 017 . . . C 2 42.348 40.667 6.218 1 53.15 ? H143 017 101 A 1 HETATM 51 H H151 017 . . . C 2 45.44 38.621 7.302 1 64.98 ? H151 017 101 A 1 HETATM 52 H H152 017 . . . C 2 45.331 40.053 6.766 1 64.98 ? H152 017 101 A 1 HETATM 53 H H153 017 . . . C 2 45.207 39.787 8.271 1 64.98 ? H153 017 101 A 1 HETATM 54 H H161 017 . . . C 2 40.63 36.21 8.596 1 48.21 ? H161 017 101 A 1 HETATM 55 H H162 017 . . . C 2 42.138 36.052 8.381 1 48.21 ? H162 017 101 A 1 HETATM 56 H H17 017 . . . C 2 41.722 36.653 6.05 1 35.39 ? H17 017 101 A 1 HETATM 57 H H18 017 . . . C 2 42.093 34.627 6.576 1 37.09 ? H18 017 101 A 1 HETATM 58 H H19 017 . . . C 2 39.561 37.46 6.502 1 40.55 ? H19 017 101 A 1 HETATM 59 H H20 017 . . . C 2 39.501 35.633 4.439 1 40.95 ? H20 017 101 A 1 HETATM 60 H H24 017 . . . C 2 38.716 38.838 1.799 1 33.73 ? H24 017 101 A 1 HETATM 61 H H251 017 . . . C 2 40.896 38.028 0.502 1 36.9 ? H251 017 101 A 1 HETATM 62 H H252 017 . . . C 2 39.806 38.509 -0.48 1 36.9 ? H252 017 101 A 1 HETATM 63 H H27 017 . . . C 2 37.823 36.39 -0.881 1 33.47 ? H27 017 101 A 1 HETATM 64 H H291 017 . . . C 2 36.813 35.016 2.262 1 32.91 ? H291 017 101 A 1 HETATM 65 H H292 017 . . . C 2 35.965 35.435 1.043 1 32.91 ? H292 017 101 A 1 HETATM 66 H H301 017 . . . C 2 36.02 37.244 1.83 1 41.44 ? H301 017 101 A 1 HETATM 67 H H302 017 . . . C 2 37.209 36.886 2.748 1 41.44 ? H302 017 101 A 1 HETATM 68 H H31 017 . . . C 2 37.346 38.225 0.51 1 34.28 ? H31 017 101 A 1 HETATM 69 H H321 017 . . . C 2 38.893 34.765 6.669 1 30.69 ? H321 017 101 A 1 HETATM 70 H H322 017 . . . C 2 38.593 35.816 7.737 1 30.69 ? H322 017 101 A 1 HETATM 71 H H33 017 . . . C 2 37.182 37.843 6.737 1 37.52 ? H33 017 101 A 1 HETATM 72 H H34 017 . . . C 2 35.101 38.278 5.775 1 37.51 ? H34 017 101 A 1 HETATM 73 H H35 017 . . . C 2 33.994 36.609 4.584 1 35.54 ? H35 017 101 A 1 HETATM 74 H H36 017 . . . C 2 34.904 34.503 4.426 1 34.14 ? H36 017 101 A 1 HETATM 75 H H37 017 . . . C 2 36.981 34.059 5.392 1 43.83 ? H37 017 101 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 75 #