data_6OQ4
#
_model_server_result.job_id            3Fo8uff8nDTH002GwBv-Uw 
_model_server_result.datetime_utc      '2024-11-05 04:08:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oq4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    6OQ4 
#
_exptl.entry_id    6OQ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.64 
_cell.angle_gamma         90 
_cell.entry_id            6OQ4 
_cell.length_a            57.35 
_cell.length_b            77.41 
_cell.length_c            58.62 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OQ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG SER 17 B SER 17 1_555 D MG MG . B MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc2 B OG1 THR 35 B THR 35 1_555 D MG MG . B MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc3 D MG MG . B MG 200 1_555 E O1B GNP . B GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc4 D MG MG . B MG 200 1_555 E O1G GNP . B GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc5 D MG MG . B MG 200 1_555 G O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc6 D MG MG . B MG 200 1_555 G O HOH . B HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     6OQ4 
_atom_sites.fract_transf_matrix[1][1]    0.017437 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000499 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012918 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017066 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 N0G A 1 801 1 N0G LIG . 
D 4 MG B 1 200 200 MG MG . 
E 5 GNP B 1 201 201 GNP GNP . 
F 6 HOH A 1 901 144 HOH HOH . 
F 6 HOH A 2 902 80 HOH HOH . 
F 6 HOH A 3 903 16 HOH HOH . 
F 6 HOH A 4 904 61 HOH HOH . 
F 6 HOH A 5 905 44 HOH HOH . 
F 6 HOH A 6 906 31 HOH HOH . 
F 6 HOH A 7 907 36 HOH HOH . 
F 6 HOH A 8 908 62 HOH HOH . 
F 6 HOH A 9 909 130 HOH HOH . 
F 6 HOH A 10 910 4 HOH HOH . 
F 6 HOH A 11 911 104 HOH HOH . 
F 6 HOH A 12 912 152 HOH HOH . 
F 6 HOH A 13 913 145 HOH HOH . 
F 6 HOH A 14 914 6 HOH HOH . 
F 6 HOH A 15 915 77 HOH HOH . 
F 6 HOH A 16 916 49 HOH HOH . 
F 6 HOH A 17 917 67 HOH HOH . 
F 6 HOH A 18 918 86 HOH HOH . 
F 6 HOH A 19 919 125 HOH HOH . 
F 6 HOH A 20 920 113 HOH HOH . 
F 6 HOH A 21 921 94 HOH HOH . 
F 6 HOH A 22 922 40 HOH HOH . 
F 6 HOH A 23 923 22 HOH HOH . 
F 6 HOH A 24 924 74 HOH HOH . 
F 6 HOH A 25 925 162 HOH HOH . 
F 6 HOH A 26 926 95 HOH HOH . 
F 6 HOH A 27 927 157 HOH HOH . 
F 6 HOH A 28 928 102 HOH HOH . 
F 6 HOH A 29 929 34 HOH HOH . 
F 6 HOH A 30 930 69 HOH HOH . 
F 6 HOH A 31 931 13 HOH HOH . 
F 6 HOH A 32 932 117 HOH HOH . 
F 6 HOH A 33 933 3 HOH HOH . 
F 6 HOH A 34 934 9 HOH HOH . 
F 6 HOH A 35 935 83 HOH HOH . 
F 6 HOH A 36 936 71 HOH HOH . 
F 6 HOH A 37 937 23 HOH HOH . 
F 6 HOH A 38 938 90 HOH HOH . 
F 6 HOH A 39 939 160 HOH HOH . 
F 6 HOH A 40 940 50 HOH HOH . 
F 6 HOH A 41 941 29 HOH HOH . 
F 6 HOH A 42 942 10 HOH HOH . 
F 6 HOH A 43 943 131 HOH HOH . 
F 6 HOH A 44 944 87 HOH HOH . 
F 6 HOH A 45 945 100 HOH HOH . 
F 6 HOH A 46 946 120 HOH HOH . 
F 6 HOH A 47 947 57 HOH HOH . 
F 6 HOH A 48 948 21 HOH HOH . 
F 6 HOH A 49 949 24 HOH HOH . 
F 6 HOH A 50 950 143 HOH HOH . 
F 6 HOH A 51 951 82 HOH HOH . 
F 6 HOH A 52 952 5 HOH HOH . 
F 6 HOH A 53 953 18 HOH HOH . 
F 6 HOH A 54 954 27 HOH HOH . 
F 6 HOH A 55 955 48 HOH HOH . 
F 6 HOH A 56 956 55 HOH HOH . 
F 6 HOH A 57 957 45 HOH HOH . 
F 6 HOH A 58 958 81 HOH HOH . 
F 6 HOH A 59 959 32 HOH HOH . 
F 6 HOH A 60 960 47 HOH HOH . 
F 6 HOH A 61 961 105 HOH HOH . 
F 6 HOH A 62 962 73 HOH HOH . 
F 6 HOH A 63 963 52 HOH HOH . 
F 6 HOH A 64 964 28 HOH HOH . 
F 6 HOH A 65 965 46 HOH HOH . 
F 6 HOH A 66 966 79 HOH HOH . 
F 6 HOH A 67 967 101 HOH HOH . 
F 6 HOH A 68 968 37 HOH HOH . 
F 6 HOH A 69 969 115 HOH HOH . 
F 6 HOH A 70 970 30 HOH HOH . 
F 6 HOH A 71 971 58 HOH HOH . 
F 6 HOH A 72 972 165 HOH HOH . 
F 6 HOH A 73 973 161 HOH HOH . 
F 6 HOH A 74 974 107 HOH HOH . 
F 6 HOH A 75 975 135 HOH HOH . 
F 6 HOH A 76 976 151 HOH HOH . 
F 6 HOH A 77 977 137 HOH HOH . 
F 6 HOH A 78 978 92 HOH HOH . 
F 6 HOH A 79 979 51 HOH HOH . 
F 6 HOH A 80 980 140 HOH HOH . 
F 6 HOH A 81 981 96 HOH HOH . 
F 6 HOH A 82 982 43 HOH HOH . 
F 6 HOH A 83 983 127 HOH HOH . 
F 6 HOH A 84 984 164 HOH HOH . 
F 6 HOH A 85 985 72 HOH HOH . 
F 6 HOH A 86 986 153 HOH HOH . 
F 6 HOH A 87 987 68 HOH HOH . 
G 6 HOH B 1 301 8 HOH HOH . 
G 6 HOH B 2 302 63 HOH HOH . 
G 6 HOH B 3 303 7 HOH HOH . 
G 6 HOH B 4 304 99 HOH HOH . 
G 6 HOH B 5 305 38 HOH HOH . 
G 6 HOH B 6 306 1 HOH HOH . 
G 6 HOH B 7 307 149 HOH HOH . 
G 6 HOH B 8 308 147 HOH HOH . 
G 6 HOH B 9 309 53 HOH HOH . 
G 6 HOH B 10 310 64 HOH HOH . 
G 6 HOH B 11 311 133 HOH HOH . 
G 6 HOH B 12 312 35 HOH HOH . 
G 6 HOH B 13 313 156 HOH HOH . 
G 6 HOH B 14 314 39 HOH HOH . 
G 6 HOH B 15 315 19 HOH HOH . 
G 6 HOH B 16 316 65 HOH HOH . 
G 6 HOH B 17 317 70 HOH HOH . 
G 6 HOH B 18 318 54 HOH HOH . 
G 6 HOH B 19 319 14 HOH HOH . 
G 6 HOH B 20 320 85 HOH HOH . 
G 6 HOH B 21 321 2 HOH HOH . 
G 6 HOH B 22 322 128 HOH HOH . 
G 6 HOH B 23 323 20 HOH HOH . 
G 6 HOH B 24 324 75 HOH HOH . 
G 6 HOH B 25 325 12 HOH HOH . 
G 6 HOH B 26 326 108 HOH HOH . 
G 6 HOH B 27 327 103 HOH HOH . 
G 6 HOH B 28 328 163 HOH HOH . 
G 6 HOH B 29 329 110 HOH HOH . 
G 6 HOH B 30 330 93 HOH HOH . 
G 6 HOH B 31 331 138 HOH HOH . 
G 6 HOH B 32 332 41 HOH HOH . 
G 6 HOH B 33 333 25 HOH HOH . 
G 6 HOH B 34 334 158 HOH HOH . 
G 6 HOH B 35 335 122 HOH HOH . 
G 6 HOH B 36 336 121 HOH HOH . 
G 6 HOH B 37 337 33 HOH HOH . 
G 6 HOH B 38 338 84 HOH HOH . 
G 6 HOH B 39 339 89 HOH HOH . 
G 6 HOH B 40 340 15 HOH HOH . 
G 6 HOH B 41 341 118 HOH HOH . 
G 6 HOH B 42 342 150 HOH HOH . 
G 6 HOH B 43 343 111 HOH HOH . 
G 6 HOH B 44 344 136 HOH HOH . 
G 6 HOH B 45 345 106 HOH HOH . 
G 6 HOH B 46 346 78 HOH HOH . 
G 6 HOH B 47 347 139 HOH HOH . 
G 6 HOH B 48 348 154 HOH HOH . 
G 6 HOH B 49 349 159 HOH HOH . 
G 6 HOH B 50 350 142 HOH HOH . 
G 6 HOH B 51 351 155 HOH HOH . 
G 6 HOH B 52 352 146 HOH HOH . 
G 6 HOH B 53 353 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . E 5 31.301 4.788 31.054 1 34.93 ? PG GNP 201 B 1 
HETATM 2 O O1G GNP . . . E 5 31.836 5.707 29.98 1 33.3 ? O1G GNP 201 B 1 
HETATM 3 O O2G GNP . . . E 5 30.172 5.475 31.764 1 33.09 ? O2G GNP 201 B 1 
HETATM 4 O O3G GNP . . . E 5 32.422 4.539 32.039 1 33.09 ? O3G GNP 201 B 1 
HETATM 5 N N3B GNP . . . E 5 30.807 3.407 30.343 1 31.79 ? N3B GNP 201 B 1 
HETATM 6 P PB GNP . . . E 5 29.767 3.304 29.087 1 32.45 ? PB GNP 201 B 1 
HETATM 7 O O1B GNP . . . E 5 30.252 4.13 27.922 1 30.73 ? O1B GNP 201 B 1 
HETATM 8 O O2B GNP . . . E 5 28.333 3.442 29.52 1 30.44 ? O2B GNP 201 B 1 
HETATM 9 O O3A GNP . . . E 5 29.917 1.795 28.579 1 31.46 ? O3A GNP 201 B 1 
HETATM 10 P PA GNP . . . E 5 30.753 1.252 27.328 1 35.09 ? PA GNP 201 B 1 
HETATM 11 O O1A GNP . . . E 5 30.101 1.771 26.089 1 34.15 ? O1A GNP 201 B 1 
HETATM 12 O O2A GNP . . . E 5 32.194 1.557 27.571 1 33.72 ? O2A GNP 201 B 1 
HETATM 13 O O5' GNP . . . E 5 30.504 -0.327 27.437 1 35.05 ? O5' GNP 201 B 1 
HETATM 14 C C5' GNP . . . E 5 31.005 -1.019 28.613 1 36.31 ? C5' GNP 201 B 1 
HETATM 15 C C4' GNP . . . E 5 31.257 -2.466 28.27 1 36.08 ? C4' GNP 201 B 1 
HETATM 16 O O4' GNP . . . E 5 30.001 -3.076 27.881 1 35.67 ? O4' GNP 201 B 1 
HETATM 17 C C3' GNP . . . E 5 32.224 -2.723 27.105 1 37.1 ? C3' GNP 201 B 1 
HETATM 18 O O3' GNP . . . E 5 33.025 -3.872 27.348 1 39.02 ? O3' GNP 201 B 1 
HETATM 19 C C2' GNP . . . E 5 31.283 -2.926 25.914 1 36.5 ? C2' GNP 201 B 1 
HETATM 20 O O2' GNP . . . E 5 31.822 -3.747 24.901 1 36.69 ? O2' GNP 201 B 1 
HETATM 21 C C1' GNP . . . E 5 30.099 -3.613 26.583 1 36.1 ? C1' GNP 201 B 1 
HETATM 22 N N9 GNP . . . E 5 28.835 -3.386 25.899 1 36.37 ? N9 GNP 201 B 1 
HETATM 23 C C8 GNP . . . E 5 28.244 -2.174 25.64 1 36.44 ? C8 GNP 201 B 1 
HETATM 24 N N7 GNP . . . E 5 27.104 -2.28 25.001 1 36.24 ? N7 GNP 201 B 1 
HETATM 25 C C5 GNP . . . E 5 26.935 -3.648 24.832 1 36.15 ? C5 GNP 201 B 1 
HETATM 26 C C6 GNP . . . E 5 25.883 -4.367 24.214 1 36.79 ? C6 GNP 201 B 1 
HETATM 27 O O6 GNP . . . E 5 24.863 -3.92 23.672 1 36.26 ? O6 GNP 201 B 1 
HETATM 28 N N1 GNP . . . E 5 26.109 -5.744 24.269 1 36.97 ? N1 GNP 201 B 1 
HETATM 29 C C2 GNP . . . E 5 27.202 -6.351 24.837 1 37.92 ? C2 GNP 201 B 1 
HETATM 30 N N2 GNP . . . E 5 27.241 -7.691 24.79 1 40.61 ? N2 GNP 201 B 1 
HETATM 31 N N3 GNP . . . E 5 28.193 -5.68 25.42 1 38.12 ? N3 GNP 201 B 1 
HETATM 32 C C4 GNP . . . E 5 27.993 -4.34 25.382 1 36.52 ? C4 GNP 201 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#