data_6OQ7 # _model_server_result.job_id Ibc4t8nfwunGluZx7jFxjA _model_server_result.datetime_utc '2024-11-13 03:40:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 6OQ7 # _exptl.entry_id 6OQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OQ7 _cell.length_a 66.018 _cell.length_b 104.096 _cell.length_c 113.825 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 25 C CYS 22 1_555 B SG CYS 98 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc1 A OD2 ASP 288 A ASP 288 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc2 A OD2 ASP 288 A ASP 288 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc3 A O GLN 515 A GLN 515 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc4 A OE2 GLU 516 A GLU 516 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc5 A O ASN 518 A ASN 518 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc6 C O2A UDP . A UDP 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc7 C O3B UDP . A UDP 601 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc8 C O1A UDP . A UDP 601 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc9 C O2A UDP . A UDP 601 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc10 E MN MN . A MN 603 1_555 G O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc11 E MN MN . A MN 603 1_555 G O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc12 F MG MG . A MG 604 1_555 G O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc13 F MG MG . A MG 604 1_555 G O HOH . A HOH 783 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OQ7 _atom_sites.fract_transf_matrix[1][1] 0.015147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UDP A 1 601 1545 UDP UDP . D 4 GLC A 1 602 1546 GLC GLC . E 5 MN A 1 603 1601 MN MN . F 6 MG A 1 604 2 MG MG . G 7 HOH A 1 701 39 HOH HOH . G 7 HOH A 2 702 35 HOH HOH . G 7 HOH A 3 703 112 HOH HOH . G 7 HOH A 4 704 53 HOH HOH . G 7 HOH A 5 705 8 HOH HOH . G 7 HOH A 6 706 113 HOH HOH . G 7 HOH A 7 707 29 HOH HOH . G 7 HOH A 8 708 28 HOH HOH . G 7 HOH A 9 709 2 HOH HOH . G 7 HOH A 10 710 27 HOH HOH . G 7 HOH A 11 711 79 HOH HOH . G 7 HOH A 12 712 45 HOH HOH . G 7 HOH A 13 713 9 HOH HOH . G 7 HOH A 14 714 66 HOH HOH . G 7 HOH A 15 715 107 HOH HOH . G 7 HOH A 16 716 40 HOH HOH . G 7 HOH A 17 717 26 HOH HOH . G 7 HOH A 18 718 67 HOH HOH . G 7 HOH A 19 719 10 HOH HOH . G 7 HOH A 20 720 5 HOH HOH . G 7 HOH A 21 721 94 HOH HOH . G 7 HOH A 22 722 25 HOH HOH . G 7 HOH A 23 723 37 HOH HOH . G 7 HOH A 24 724 47 HOH HOH . G 7 HOH A 25 725 32 HOH HOH . G 7 HOH A 26 726 36 HOH HOH . G 7 HOH A 27 727 68 HOH HOH . G 7 HOH A 28 728 114 HOH HOH . G 7 HOH A 29 729 16 HOH HOH . G 7 HOH A 30 730 111 HOH HOH . G 7 HOH A 31 731 14 HOH HOH . G 7 HOH A 32 732 74 HOH HOH . G 7 HOH A 33 733 3 HOH HOH . G 7 HOH A 34 734 52 HOH HOH . G 7 HOH A 35 735 11 HOH HOH . G 7 HOH A 36 736 15 HOH HOH . G 7 HOH A 37 737 95 HOH HOH . G 7 HOH A 38 738 96 HOH HOH . G 7 HOH A 39 739 57 HOH HOH . G 7 HOH A 40 740 4 HOH HOH . G 7 HOH A 41 741 18 HOH HOH . G 7 HOH A 42 742 51 HOH HOH . G 7 HOH A 43 743 97 HOH HOH . G 7 HOH A 44 744 62 HOH HOH . G 7 HOH A 45 745 12 HOH HOH . G 7 HOH A 46 746 83 HOH HOH . G 7 HOH A 47 747 20 HOH HOH . G 7 HOH A 48 748 6 HOH HOH . G 7 HOH A 49 749 82 HOH HOH . G 7 HOH A 50 750 75 HOH HOH . G 7 HOH A 51 751 81 HOH HOH . G 7 HOH A 52 752 63 HOH HOH . G 7 HOH A 53 753 34 HOH HOH . G 7 HOH A 54 754 54 HOH HOH . G 7 HOH A 55 755 93 HOH HOH . G 7 HOH A 56 756 13 HOH HOH . G 7 HOH A 57 757 23 HOH HOH . G 7 HOH A 58 758 108 HOH HOH . G 7 HOH A 59 759 41 HOH HOH . G 7 HOH A 60 760 38 HOH HOH . G 7 HOH A 61 761 64 HOH HOH . G 7 HOH A 62 762 87 HOH HOH . G 7 HOH A 63 763 98 HOH HOH . G 7 HOH A 64 764 19 HOH HOH . G 7 HOH A 65 765 115 HOH HOH . G 7 HOH A 66 766 7 HOH HOH . G 7 HOH A 67 767 60 HOH HOH . G 7 HOH A 68 768 102 HOH HOH . G 7 HOH A 69 769 103 HOH HOH . G 7 HOH A 70 770 105 HOH HOH . G 7 HOH A 71 771 31 HOH HOH . G 7 HOH A 72 772 84 HOH HOH . G 7 HOH A 73 773 30 HOH HOH . G 7 HOH A 74 774 73 HOH HOH . G 7 HOH A 75 775 55 HOH HOH . G 7 HOH A 76 776 24 HOH HOH . G 7 HOH A 77 777 49 HOH HOH . G 7 HOH A 78 778 33 HOH HOH . G 7 HOH A 79 779 85 HOH HOH . G 7 HOH A 80 780 44 HOH HOH . G 7 HOH A 81 781 101 HOH HOH . G 7 HOH A 82 782 88 HOH HOH . G 7 HOH A 83 783 110 HOH HOH . G 7 HOH A 84 784 43 HOH HOH . G 7 HOH A 85 785 46 HOH HOH . G 7 HOH A 86 786 61 HOH HOH . G 7 HOH A 87 787 78 HOH HOH . H 7 HOH C 1 201 21 HOH HOH . H 7 HOH C 2 202 71 HOH HOH . H 7 HOH C 3 203 89 HOH HOH . H 7 HOH C 4 204 50 HOH HOH . H 7 HOH C 5 205 77 HOH HOH . H 7 HOH C 6 206 42 HOH HOH . H 7 HOH C 7 207 56 HOH HOH . H 7 HOH C 8 208 48 HOH HOH . H 7 HOH C 9 209 86 HOH HOH . H 7 HOH C 10 210 59 HOH HOH . H 7 HOH C 11 211 69 HOH HOH . H 7 HOH C 12 212 91 HOH HOH . H 7 HOH C 13 213 65 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 15.367 _atom_site.Cartn_y 3.853 _atom_site.Cartn_z -37.189 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #