data_6OQD # _model_server_result.job_id H8kjqGiqumvCK5YKROLqSw _model_server_result.datetime_utc '2024-11-22 12:39:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6OQD # _exptl.entry_id 6OQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 587.17 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4S,7aR,9aR,10S,15R)-6'-chloro-10-hydroxy-15-methyl-3',4',7a,8,9,9a,10,11,12,13,14,15-dodecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OQD _cell.length_a 43.48 _cell.length_b 89.664 _cell.length_c 84.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 43.48 0 42.265 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H39 Cl N2 O5 S' _chem_comp.formula_weight 587.17 _chem_comp.id N0M _chem_comp.mon_nstd_flag . _chem_comp.name "(4S,7aR,9aR,10S,15R)-6'-chloro-10-hydroxy-15-methyl-3',4',7a,8,9,9a,10,11,12,13,14,15-dodecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C17 N0M sing 237 n n C17 C16 N0M doub 238 n y C17 C18 N0M sing 239 n y C16 C15 N0M sing 240 n y C18 C11 N0M doub 241 n y C15 C10 N0M doub 242 n y C9 O1 N0M sing 243 n n C9 C8 N0M sing 244 n n C11 C10 N0M sing 245 n y C11 C12 N0M sing 246 n n C10 C8 N0M sing 247 n n C12 C13 N0M sing 248 n n O1 C2 N0M sing 249 n n C8 C14 N0M sing 250 n n C8 C7 N0M sing 251 n n C14 C13 N0M sing 252 n n C3 C2 N0M doub 253 n y C3 C4 N0M sing 254 n y C2 C1 N0M sing 255 n y C4 C5 N0M doub 256 n y C7 N1 N0M sing 257 n n C1 N1 N0M sing 258 n n C1 C6 N0M doub 259 n y N1 C20 N0M sing 260 n n C5 C6 N0M sing 261 n y C5 C19 N0M sing 262 n n C20 C21 N0M sing 263 n n C19 N2 N0M sing 264 n n C19 O2 N0M doub 265 n n N2 S1 N0M sing 266 n n O4 S1 N0M doub 267 n n C21 C24 N0M sing 268 n n C21 C22 N0M sing 269 n n S1 O5 N0M doub 270 n n S1 C28 N0M sing 271 n n C24 C23 N0M sing 272 n n C22 C23 N0M sing 273 n n C22 C25 N0M sing 274 n n C28 C29 N0M sing 275 n n C28 C31 N0M sing 276 n n C25 C26 N0M sing 277 n n C25 O3 N0M sing 278 n n C29 C30 N0M sing 279 n n C26 C27 N0M sing 280 n n C27 C30 N0M sing 281 n n C14 H1 N0M sing 282 n n C14 H2 N0M sing 283 n n C13 H3 N0M sing 284 n n C13 H4 N0M sing 285 n n C12 H5 N0M sing 286 n n C12 H6 N0M sing 287 n n C18 H7 N0M sing 288 n n C16 H8 N0M sing 289 n n C15 H9 N0M sing 290 n n C7 H10 N0M sing 291 n n C7 H11 N0M sing 292 n n C9 H12 N0M sing 293 n n C9 H13 N0M sing 294 n n C3 H14 N0M sing 295 n n C4 H15 N0M sing 296 n n C6 H16 N0M sing 297 n n C20 H17 N0M sing 298 n n C20 H18 N0M sing 299 n n C21 H19 N0M sing 300 n n C24 H20 N0M sing 301 n n C24 H21 N0M sing 302 n n C23 H22 N0M sing 303 n n C23 H23 N0M sing 304 n n C22 H24 N0M sing 305 n n C25 H25 N0M sing 306 n n O3 H26 N0M sing 307 n n C26 H27 N0M sing 308 n n C26 H28 N0M sing 309 n n C27 H29 N0M sing 310 n n C27 H30 N0M sing 311 n n C30 H31 N0M sing 312 n n C30 H32 N0M sing 313 n n C29 H33 N0M sing 314 n n C29 H34 N0M sing 315 n n C28 H35 N0M sing 316 n n C31 H36 N0M sing 317 n n C31 H37 N0M sing 318 n n C31 H38 N0M sing 319 n n N2 H39 N0M sing 320 n n # _atom_sites.entry_id 6OQD _atom_sites.fract_transf_matrix[1][1] 0.022999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N0M A 1 401 1 N0M UNL . C 3 HOH A 1 501 30 HOH HOH . C 3 HOH A 2 502 122 HOH HOH . C 3 HOH A 3 503 115 HOH HOH . C 3 HOH A 4 504 166 HOH HOH . C 3 HOH A 5 505 90 HOH HOH . C 3 HOH A 6 506 87 HOH HOH . C 3 HOH A 7 507 146 HOH HOH . C 3 HOH A 8 508 34 HOH HOH . C 3 HOH A 9 509 36 HOH HOH . C 3 HOH A 10 510 59 HOH HOH . C 3 HOH A 11 511 27 HOH HOH . C 3 HOH A 12 512 26 HOH HOH . C 3 HOH A 13 513 57 HOH HOH . C 3 HOH A 14 514 46 HOH HOH . C 3 HOH A 15 515 74 HOH HOH . C 3 HOH A 16 516 86 HOH HOH . C 3 HOH A 17 517 80 HOH HOH . C 3 HOH A 18 518 88 HOH HOH . C 3 HOH A 19 519 126 HOH HOH . C 3 HOH A 20 520 140 HOH HOH . C 3 HOH A 21 521 103 HOH HOH . C 3 HOH A 22 522 96 HOH HOH . C 3 HOH A 23 523 152 HOH HOH . C 3 HOH A 24 524 142 HOH HOH . C 3 HOH A 25 525 98 HOH HOH . C 3 HOH A 26 526 149 HOH HOH . C 3 HOH A 27 527 108 HOH HOH . C 3 HOH A 28 528 62 HOH HOH . C 3 HOH A 29 529 65 HOH HOH . C 3 HOH A 30 530 120 HOH HOH . C 3 HOH A 31 531 33 HOH HOH . C 3 HOH A 32 532 156 HOH HOH . C 3 HOH A 33 533 21 HOH HOH . C 3 HOH A 34 534 37 HOH HOH . C 3 HOH A 35 535 58 HOH HOH . C 3 HOH A 36 536 7 HOH HOH . C 3 HOH A 37 537 14 HOH HOH . C 3 HOH A 38 538 155 HOH HOH . C 3 HOH A 39 539 121 HOH HOH . C 3 HOH A 40 540 61 HOH HOH . C 3 HOH A 41 541 12 HOH HOH . C 3 HOH A 42 542 38 HOH HOH . C 3 HOH A 43 543 29 HOH HOH . C 3 HOH A 44 544 76 HOH HOH . C 3 HOH A 45 545 2 HOH HOH . C 3 HOH A 46 546 161 HOH HOH . C 3 HOH A 47 547 23 HOH HOH . C 3 HOH A 48 548 55 HOH HOH . C 3 HOH A 49 549 71 HOH HOH . C 3 HOH A 50 550 119 HOH HOH . C 3 HOH A 51 551 131 HOH HOH . C 3 HOH A 52 552 50 HOH HOH . C 3 HOH A 53 553 3 HOH HOH . C 3 HOH A 54 554 53 HOH HOH . C 3 HOH A 55 555 85 HOH HOH . C 3 HOH A 56 556 18 HOH HOH . C 3 HOH A 57 557 72 HOH HOH . C 3 HOH A 58 558 68 HOH HOH . C 3 HOH A 59 559 49 HOH HOH . C 3 HOH A 60 560 82 HOH HOH . C 3 HOH A 61 561 64 HOH HOH . C 3 HOH A 62 562 4 HOH HOH . C 3 HOH A 63 563 102 HOH HOH . C 3 HOH A 64 564 167 HOH HOH . C 3 HOH A 65 565 159 HOH HOH . C 3 HOH A 66 566 41 HOH HOH . C 3 HOH A 67 567 133 HOH HOH . C 3 HOH A 68 568 19 HOH HOH . C 3 HOH A 69 569 20 HOH HOH . C 3 HOH A 70 570 164 HOH HOH . C 3 HOH A 71 571 137 HOH HOH . C 3 HOH A 72 572 22 HOH HOH . C 3 HOH A 73 573 63 HOH HOH . C 3 HOH A 74 574 106 HOH HOH . C 3 HOH A 75 575 1 HOH HOH . C 3 HOH A 76 576 128 HOH HOH . C 3 HOH A 77 577 144 HOH HOH . C 3 HOH A 78 578 127 HOH HOH . C 3 HOH A 79 579 11 HOH HOH . C 3 HOH A 80 580 45 HOH HOH . C 3 HOH A 81 581 15 HOH HOH . C 3 HOH A 82 582 31 HOH HOH . C 3 HOH A 83 583 51 HOH HOH . C 3 HOH A 84 584 5 HOH HOH . C 3 HOH A 85 585 124 HOH HOH . C 3 HOH A 86 586 163 HOH HOH . C 3 HOH A 87 587 111 HOH HOH . C 3 HOH A 88 588 125 HOH HOH . C 3 HOH A 89 589 13 HOH HOH . C 3 HOH A 90 590 43 HOH HOH . C 3 HOH A 91 591 109 HOH HOH . C 3 HOH A 92 592 67 HOH HOH . C 3 HOH A 93 593 97 HOH HOH . C 3 HOH A 94 594 52 HOH HOH . C 3 HOH A 95 595 73 HOH HOH . C 3 HOH A 96 596 42 HOH HOH . C 3 HOH A 97 597 16 HOH HOH . C 3 HOH A 98 598 112 HOH HOH . C 3 HOH A 99 599 116 HOH HOH . C 3 HOH A 100 600 75 HOH HOH . C 3 HOH A 101 601 25 HOH HOH . C 3 HOH A 102 602 17 HOH HOH . C 3 HOH A 103 603 141 HOH HOH . C 3 HOH A 104 604 162 HOH HOH . C 3 HOH A 105 605 48 HOH HOH . C 3 HOH A 106 606 6 HOH HOH . C 3 HOH A 107 607 70 HOH HOH . C 3 HOH A 108 608 93 HOH HOH . C 3 HOH A 109 609 9 HOH HOH . C 3 HOH A 110 610 10 HOH HOH . C 3 HOH A 111 611 136 HOH HOH . C 3 HOH A 112 612 66 HOH HOH . C 3 HOH A 113 613 107 HOH HOH . C 3 HOH A 114 614 69 HOH HOH . C 3 HOH A 115 615 35 HOH HOH . C 3 HOH A 116 616 105 HOH HOH . C 3 HOH A 117 617 28 HOH HOH . C 3 HOH A 118 618 47 HOH HOH . C 3 HOH A 119 619 99 HOH HOH . C 3 HOH A 120 620 145 HOH HOH . C 3 HOH A 121 621 8 HOH HOH . C 3 HOH A 122 622 118 HOH HOH . C 3 HOH A 123 623 44 HOH HOH . C 3 HOH A 124 624 151 HOH HOH . C 3 HOH A 125 625 157 HOH HOH . C 3 HOH A 126 626 158 HOH HOH . C 3 HOH A 127 627 89 HOH HOH . C 3 HOH A 128 628 24 HOH HOH . C 3 HOH A 129 629 114 HOH HOH . C 3 HOH A 130 630 101 HOH HOH . C 3 HOH A 131 631 113 HOH HOH . C 3 HOH A 132 632 150 HOH HOH . C 3 HOH A 133 633 77 HOH HOH . C 3 HOH A 134 634 117 HOH HOH . C 3 HOH A 135 635 100 HOH HOH . C 3 HOH A 136 636 91 HOH HOH . C 3 HOH A 137 637 148 HOH HOH . C 3 HOH A 138 638 84 HOH HOH . C 3 HOH A 139 639 92 HOH HOH . C 3 HOH A 140 640 95 HOH HOH . C 3 HOH A 141 641 123 HOH HOH . C 3 HOH A 142 642 132 HOH HOH . C 3 HOH A 143 643 56 HOH HOH . C 3 HOH A 144 644 104 HOH HOH . C 3 HOH A 145 645 130 HOH HOH . C 3 HOH A 146 646 170 HOH HOH . C 3 HOH A 147 647 83 HOH HOH . C 3 HOH A 148 648 135 HOH HOH . C 3 HOH A 149 649 39 HOH HOH . C 3 HOH A 150 650 78 HOH HOH . C 3 HOH A 151 651 110 HOH HOH . C 3 HOH A 152 652 169 HOH HOH . C 3 HOH A 153 653 168 HOH HOH . C 3 HOH A 154 654 138 HOH HOH . C 3 HOH A 155 655 40 HOH HOH . C 3 HOH A 156 656 143 HOH HOH . C 3 HOH A 157 657 94 HOH HOH . C 3 HOH A 158 658 147 HOH HOH . C 3 HOH A 159 659 129 HOH HOH . C 3 HOH A 160 660 160 HOH HOH . C 3 HOH A 161 661 153 HOH HOH . C 3 HOH A 162 662 54 HOH HOH . C 3 HOH A 163 663 171 HOH HOH . C 3 HOH A 164 664 165 HOH HOH . C 3 HOH A 165 665 81 HOH HOH . C 3 HOH A 166 666 154 HOH HOH . C 3 HOH A 167 667 60 HOH HOH . C 3 HOH A 168 668 139 HOH HOH . C 3 HOH A 169 669 79 HOH HOH . C 3 HOH A 170 670 134 HOH HOH . C 3 HOH A 171 671 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 N0M . . . B 2 12.399 -1.371 11.932 1 11.51 ? C14 N0M 401 A 1 HETATM 2 C C13 N0M . . . B 2 10.928 -1.38 12.341 1 11.56 ? C13 N0M 401 A 1 HETATM 3 C C12 N0M . . . B 2 10.096 -2.154 11.333 1 11.54 ? C12 N0M 401 A 1 HETATM 4 C C11 N0M . . . B 2 10.707 -3.531 11.073 1 11.36 ? C11 N0M 401 A 1 HETATM 5 C C18 N0M . . . B 2 9.887 -4.519 10.561 1 11.78 ? C18 N0M 401 A 1 HETATM 6 C C17 N0M . . . B 2 10.349 -5.805 10.301 1 11.9 ? C17 N0M 401 A 1 HETATM 7 CL CL1 N0M . . . B 2 9.251 -6.982 9.672 1 15.06 ? CL1 N0M 401 A 1 HETATM 8 C C16 N0M . . . B 2 11.678 -6.127 10.543 1 11.5 ? C16 N0M 401 A 1 HETATM 9 C C15 N0M . . . B 2 12.527 -5.14 11.048 1 11.05 ? C15 N0M 401 A 1 HETATM 10 C C10 N0M . . . B 2 12.051 -3.849 11.321 1 11.2 ? C10 N0M 401 A 1 HETATM 11 C C8 N0M . . . B 2 13.018 -2.777 11.885 1 11.27 ? C8 N0M 401 A 1 HETATM 12 C C7 N0M . . . B 2 13.413 -3.121 13.316 1 11.57 ? C7 N0M 401 A 1 HETATM 13 C C9 N0M . . . B 2 14.284 -2.714 11.055 1 11.46 ? C9 N0M 401 A 1 HETATM 14 O O1 N0M . . . B 2 15.213 -3.768 11.399 1 11.19 ? O1 N0M 401 A 1 HETATM 15 C C2 N0M . . . B 2 16.105 -3.384 12.366 1 11.51 ? C2 N0M 401 A 1 HETATM 16 C C3 N0M . . . B 2 17.424 -3.779 12.106 1 12.12 ? C3 N0M 401 A 1 HETATM 17 C C4 N0M . . . B 2 18.434 -3.473 12.999 1 12.32 ? C4 N0M 401 A 1 HETATM 18 C C5 N0M . . . B 2 18.124 -2.749 14.148 1 12.78 ? C5 N0M 401 A 1 HETATM 19 C C6 N0M . . . B 2 16.824 -2.364 14.411 1 12.36 ? C6 N0M 401 A 1 HETATM 20 C C1 N0M . . . B 2 15.8 -2.675 13.522 1 11.62 ? C1 N0M 401 A 1 HETATM 21 N N1 N0M . . . B 2 14.547 -2.35 13.833 1 11.82 ? N1 N0M 401 A 1 HETATM 22 C C20 N0M . . . B 2 14.207 -1.545 15.045 1 12.52 ? C20 N0M 401 A 1 HETATM 23 C C21 N0M . . . B 2 14.365 -2.391 16.335 1 13.69 ? C21 N0M 401 A 1 HETATM 24 C C24 N0M . . . B 2 13.085 -3.115 16.795 1 13.93 ? C24 N0M 401 A 1 HETATM 25 C C23 N0M . . . B 2 13.41 -2.628 18.228 1 14.45 ? C23 N0M 401 A 1 HETATM 26 C C22 N0M . . . B 2 14.24 -1.513 17.592 1 14.7 ? C22 N0M 401 A 1 HETATM 27 C C25 N0M . . . B 2 15.591 -1.214 18.306 1 16.49 ? C25 N0M 401 A 1 HETATM 28 O O3 N0M . . . B 2 15.35 -0.447 19.508 1 19.2 ? O3 N0M 401 A 1 HETATM 29 C C26 N0M . . . B 2 16.471 -2.433 18.644 1 17.26 ? C26 N0M 401 A 1 HETATM 30 C C27 N0M . . . B 2 17.812 -1.972 19.245 1 18.25 ? C27 N0M 401 A 1 HETATM 31 C C30 N0M . . . B 2 18.697 -3.136 19.665 1 18.22 ? C30 N0M 401 A 1 HETATM 32 C C29 N0M . . . B 2 19.481 -3.724 18.5 1 18.39 ? C29 N0M 401 A 1 HETATM 33 C C28 N0M . . . B 2 20.622 -2.804 18.075 1 18.56 ? C28 N0M 401 A 1 HETATM 34 C C31 N0M . . . B 2 21.773 -2.86 19.081 1 19.87 ? C31 N0M 401 A 1 HETATM 35 S S1 N0M . . . B 2 21.233 -3.254 16.421 1 18.58 ? S1 N0M 401 A 1 HETATM 36 O O4 N0M . . . B 2 22.104 -2.182 15.943 1 18.79 ? O4 N0M 401 A 1 HETATM 37 O O5 N0M . . . B 2 21.958 -4.575 16.475 1 21.42 ? O5 N0M 401 A 1 HETATM 38 N N2 N0M . . . B 2 20.03 -3.407 15.366 1 15.96 ? N2 N0M 401 A 1 HETATM 39 C C19 N0M . . . B 2 19.201 -2.396 15.147 1 14.42 ? C19 N0M 401 A 1 HETATM 40 O O2 N0M . . . B 2 19.186 -1.307 15.729 1 14.91 ? O2 N0M 401 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 40 #