data_6OR2 # _model_server_result.job_id n8bHlKxUcRwddkjt7bYnsQ _model_server_result.datetime_utc '2024-11-30 18:36:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6or2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 6OR2 # _exptl.entry_id 6OR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 746.05 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OR2 _cell.length_a 80.814 _cell.length_b 129.457 _cell.length_c 154.591 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C41 H80 N O8 P' _chem_comp.formula_weight 746.05 _chem_comp.id L9Q _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-stearoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 N L9Q sing 173 n n N HN L9Q sing 174 n n N HNA L9Q sing 175 n n O3P P L9Q sing 176 n n O1P P L9Q doub 177 n n P O2P L9Q sing 178 n n P O4P L9Q sing 179 n n C2 C1 L9Q sing 180 n n O3P C1 L9Q sing 181 n n C1 H1 L9Q sing 182 n n C1 H1A L9Q sing 183 n n C3 C2 L9Q sing 184 n n C2 O2 L9Q sing 185 n n C2 H2 L9Q sing 186 n n C31 O2 L9Q sing 187 n n O3 C3 L9Q sing 188 n n C3 H3 L9Q sing 189 n n C3 H3A L9Q sing 190 n n C11 O3 L9Q sing 191 n n O4P C4 L9Q sing 192 n n C4 C5 L9Q sing 193 n n C4 H4 L9Q sing 194 n n C4 H4A L9Q sing 195 n n C5 H5 L9Q sing 196 n n C5 H5A L9Q sing 197 n n C12 C11 L9Q sing 198 n n O11 C11 L9Q doub 199 n n C12 C13 L9Q sing 200 n n C12 H12 L9Q sing 201 n n C12 H12A L9Q sing 202 n n C14 C13 L9Q sing 203 n n C13 H13 L9Q sing 204 n n C13 H13A L9Q sing 205 n n C15 C14 L9Q sing 206 n n C14 H14 L9Q sing 207 n n C14 H14A L9Q sing 208 n n C16 C15 L9Q sing 209 n n C15 H15 L9Q sing 210 n n C15 H15A L9Q sing 211 n n C16 C17 L9Q sing 212 n n C16 H16 L9Q sing 213 n n C16 H16A L9Q sing 214 n n C17 C18 L9Q sing 215 n n C17 H17 L9Q sing 216 n n C17 H17A L9Q sing 217 n n C19 C18 L9Q sing 218 n n C18 H18 L9Q sing 219 n n C18 H18A L9Q sing 220 n n C19 C20 L9Q sing 221 n n C19 H19 L9Q sing 222 n n C19 H19A L9Q sing 223 n n C21 C20 L9Q sing 224 n n C20 H20 L9Q sing 225 n n C20 H20A L9Q sing 226 n n C21 C22 L9Q sing 227 n n C21 H21 L9Q sing 228 n n C21 H21A L9Q sing 229 n n C23 C22 L9Q sing 230 n n C22 H22 L9Q sing 231 n n C22 H22A L9Q sing 232 n n C23 C24 L9Q sing 233 n n C23 H23 L9Q sing 234 n n C23 H23A L9Q sing 235 n n C25 C24 L9Q sing 236 n n C24 H24 L9Q sing 237 n n C24 H24A L9Q sing 238 n n C25 C26 L9Q sing 239 n n C25 H25 L9Q sing 240 n n C25 H25A L9Q sing 241 n n C27 C26 L9Q sing 242 n n C26 H26 L9Q sing 243 n n C26 H26A L9Q sing 244 n n C28 C27 L9Q sing 245 n n C27 H27 L9Q sing 246 n n C27 H27A L9Q sing 247 n n C28 H28 L9Q sing 248 n n C28 H28A L9Q sing 249 n n C28 H28B L9Q sing 250 n n O2P HO2P L9Q sing 251 n n C32 C31 L9Q sing 252 n n C31 O31 L9Q doub 253 n n C32 C33 L9Q sing 254 n n C32 H32 L9Q sing 255 n n C32 H32A L9Q sing 256 n n C34 C33 L9Q sing 257 n n C33 H33 L9Q sing 258 n n C33 H33A L9Q sing 259 n n C34 C35 L9Q sing 260 n n C34 H34 L9Q sing 261 n n C34 H34A L9Q sing 262 n n C36 C35 L9Q sing 263 n n C35 H35 L9Q sing 264 n n C35 H35A L9Q sing 265 n n C36 C37 L9Q sing 266 n n C36 H36 L9Q sing 267 n n C36 H36A L9Q sing 268 n n C38 C37 L9Q sing 269 n n C37 H37 L9Q sing 270 n n C37 H37A L9Q sing 271 n n C39 C38 L9Q sing 272 z n C38 H38 L9Q sing 273 n n C38 H38A L9Q sing 274 n n C39 C40 L9Q doub 275 n n C39 H39 L9Q sing 276 n n C40 C41 L9Q sing 277 n n C40 H40 L9Q sing 278 n n C41 C42 L9Q sing 279 n n C41 H41 L9Q sing 280 n n C41 H41A L9Q sing 281 n n C42 C43 L9Q sing 282 n n C42 H42 L9Q sing 283 n n C42 H42A L9Q sing 284 n n C43 C44 L9Q sing 285 n n C43 H43 L9Q sing 286 n n C43 H43A L9Q sing 287 n n C44 C45 L9Q sing 288 n n C44 H44 L9Q sing 289 n n C44 H44A L9Q sing 290 n n C45 C46 L9Q sing 291 n n C45 H45 L9Q sing 292 n n C45 H45A L9Q sing 293 n n C46 C47 L9Q sing 294 n n C46 H46 L9Q sing 295 n n C46 H46A L9Q sing 296 n n C47 C48 L9Q sing 297 n n C47 H47 L9Q sing 298 n n C47 H47A L9Q sing 299 n n C48 H48 L9Q sing 300 n n C48 H48A L9Q sing 301 n n C48 H48B L9Q sing 302 n n # _atom_sites.entry_id 6OR2 _atom_sites.fract_transf_matrix[1][1] 0.012374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L9Q A 1 801 1 L9Q DRG . C 3 LMT A 1 802 901 LMT LMT . D 4 HOH A 1 901 4 HOH HOH . D 4 HOH A 2 902 2 HOH HOH . D 4 HOH A 3 903 1 HOH HOH . D 4 HOH A 4 904 6 HOH HOH . D 4 HOH A 5 905 10 HOH HOH . D 4 HOH A 6 906 5 HOH HOH . D 4 HOH A 7 907 7 HOH HOH . D 4 HOH A 8 908 3 HOH HOH . D 4 HOH A 9 909 12 HOH HOH . D 4 HOH A 10 910 9 HOH HOH . D 4 HOH A 11 911 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N L9Q . . . B 2 142.757 76.157 52.888 0.99 99.83 ? N L9Q 801 A 1 HETATM 2 P P L9Q . . . B 2 145.648 73.709 53.63 0.99 102.58 ? P L9Q 801 A 1 HETATM 3 C C1 L9Q . . . B 2 145.673 76.281 53.232 0.99 107.78 ? C1 L9Q 801 A 1 HETATM 4 C C2 L9Q . . . B 2 145.6 77.551 54.045 0.99 117.26 ? C2 L9Q 801 A 1 HETATM 5 O O2 L9Q . . . B 2 146.898 77.937 54.334 0.99 122.6 ? O2 L9Q 801 A 1 HETATM 6 C C3 L9Q . . . B 2 144.857 78.621 53.237 0.99 110.97 ? C3 L9Q 801 A 1 HETATM 7 O O3 L9Q . . . B 2 145.127 79.92 53.725 0.99 110.6 ? O3 L9Q 801 A 1 HETATM 8 C C4 L9Q . . . B 2 143.958 74.512 51.794 0.99 81.13 ? C4 L9Q 801 A 1 HETATM 9 C C5 L9Q . . . B 2 142.6 74.885 52.258 0.99 83.85 ? C5 L9Q 801 A 1 HETATM 10 C C11 L9Q . . . B 2 144.016 80.814 53.694 0.99 106.53 ? C11 L9Q 801 A 1 HETATM 11 O O11 L9Q . . . B 2 143.049 80.535 53.108 0.99 99.21 ? O11 L9Q 801 A 1 HETATM 12 C C12 L9Q . . . B 2 144.07 82.154 54.441 0.99 104.28 ? C12 L9Q 801 A 1 HETATM 13 C C13 L9Q . . . B 2 142.676 82.644 54.79 0.99 98.87 ? C13 L9Q 801 A 1 HETATM 14 C C14 L9Q . . . B 2 142.696 83.691 55.91 0.99 105.72 ? C14 L9Q 801 A 1 HETATM 15 C C15 L9Q . . . B 2 143.9 83.506 56.827 0.99 105.94 ? C15 L9Q 801 A 1 HETATM 16 C C16 L9Q . . . B 2 144.01 84.559 57.941 0.99 104.59 ? C16 L9Q 801 A 1 HETATM 17 C C17 L9Q . . . B 2 142.666 85.025 58.56 0.99 105.98 ? C17 L9Q 801 A 1 HETATM 18 C C18 L9Q . . . B 2 142.814 86.345 59.373 0.99 95.16 ? C18 L9Q 801 A 1 HETATM 19 C C19 L9Q . . . B 2 142.173 86.349 60.776 0.99 95.31 ? C19 L9Q 801 A 1 HETATM 20 O O1P L9Q . . . B 2 145.398 72.876 54.832 0.99 105.39 ? O1P L9Q 801 A 1 HETATM 21 C C20 L9Q . . . B 2 143.106 86.914 61.869 0.99 91.59 ? C20 L9Q 801 A 1 HETATM 22 C C21 L9Q . . . B 2 142.466 86.954 63.265 0.99 91.75 ? C21 L9Q 801 A 1 HETATM 23 C C22 L9Q . . . B 2 143.464 86.763 64.416 0.99 99.85 ? C22 L9Q 801 A 1 HETATM 24 C C23 L9Q . . . B 2 143.292 87.729 65.591 0.99 99.53 ? C23 L9Q 801 A 1 HETATM 25 C C24 L9Q . . . B 2 142.733 87.11 66.876 0.99 103.64 ? C24 L9Q 801 A 1 HETATM 26 C C25 L9Q . . . B 2 143.504 87.592 68.114 0.99 100.64 ? C25 L9Q 801 A 1 HETATM 27 C C26 L9Q . . . B 2 142.533 88.181 69.128 0.99 93.33 ? C26 L9Q 801 A 1 HETATM 28 C C27 L9Q . . . B 2 142.82 87.743 70.558 0.99 85.98 ? C27 L9Q 801 A 1 HETATM 29 O O2P L9Q . . . B 2 146.845 73.112 53.027 0.99 108.66 ? O2P L9Q 801 A 1 HETATM 30 C C31 L9Q . . . B 2 147.087 78.233 55.708 0.99 124.02 ? C31 L9Q 801 A 1 HETATM 31 O O31 L9Q . . . B 2 146.98 77.393 56.504 0.99 112.51 ? O31 L9Q 801 A 1 HETATM 32 C C32 L9Q . . . B 2 147.433 79.67 56.116 0.99 132.75 ? C32 L9Q 801 A 1 HETATM 33 C C33 L9Q . . . B 2 147.106 80.059 57.575 0.99 129.84 ? C33 L9Q 801 A 1 HETATM 34 C C34 L9Q . . . B 2 147.723 81.426 57.941 0.99 116.19 ? C34 L9Q 801 A 1 HETATM 35 C C35 L9Q . . . B 2 146.735 82.593 58.098 0.99 102.89 ? C35 L9Q 801 A 1 HETATM 36 C C36 L9Q . . . B 2 146.963 83.148 59.505 0.99 102.59 ? C36 L9Q 801 A 1 HETATM 37 C C37 L9Q . . . B 2 146.19 84.455 59.776 0.99 110.13 ? C37 L9Q 801 A 1 HETATM 38 C C38 L9Q . . . B 2 146.365 84.925 61.234 0.99 108.1 ? C38 L9Q 801 A 1 HETATM 39 C C39 L9Q . . . B 2 147.79 85.324 61.614 0.99 104.48 ? C39 L9Q 801 A 1 HETATM 40 O O3P L9Q . . . B 2 145.981 75.255 54.106 0.99 99.29 ? O3P L9Q 801 A 1 HETATM 41 C C40 L9Q . . . B 2 148.527 84.189 62.336 0.99 104.83 ? C40 L9Q 801 A 1 HETATM 42 C C41 L9Q . . . B 2 149.339 83.282 61.398 0.99 99.61 ? C41 L9Q 801 A 1 HETATM 43 C C42 L9Q . . . B 2 150.28 82.379 62.221 0.99 101.74 ? C42 L9Q 801 A 1 HETATM 44 C C43 L9Q . . . B 2 150.81 83.079 63.514 0.99 105.92 ? C43 L9Q 801 A 1 HETATM 45 C C44 L9Q . . . B 2 151.789 82.116 64.249 0.99 113.63 ? C44 L9Q 801 A 1 HETATM 46 C C45 L9Q . . . B 2 150.949 81.265 65.242 0.99 119.48 ? C45 L9Q 801 A 1 HETATM 47 C C46 L9Q . . . B 2 150.164 82.128 66.232 0.99 126.05 ? C46 L9Q 801 A 1 HETATM 48 C C47 L9Q . . . B 2 150.157 81.527 67.624 0.99 136.06 ? C47 L9Q 801 A 1 HETATM 49 C C48 L9Q . . . B 2 149.019 82.051 68.471 0.99 139.76 ? C48 L9Q 801 A 1 HETATM 50 O O4P L9Q . . . B 2 144.372 73.541 52.653 0.99 90.47 ? O4P L9Q 801 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 50 #