data_6OR8 # _model_server_result.job_id fEwpu2Ffli8FBnzNUZz3Rg _model_server_result.datetime_utc '2024-11-19 09:30:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6or8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6OR8 # _exptl.entry_id 6OR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.39 _cell.angle_gamma 90 _cell.entry_id 6OR8 _cell.length_a 47.393 _cell.length_b 52.527 _cell.length_c 53.393 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 83 A CYS 83 1_555 B FE2 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 A SG CYS 170 A CYS 170 1_555 B FE4 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A SG CYS 256 A CYS 256 1_555 B FE1 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc4 B FE3 SF4 . A SF4 401 1_555 C OAI 5XR . A 5XR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc5 B FE3 SF4 . A SF4 401 1_555 C OAJ 5XR . A 5XR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 285 n n P O2 PO4 sing 286 n n P O3 PO4 sing 287 n n P O4 PO4 sing 288 n n # _atom_sites.entry_id 6OR8 _atom_sites.fract_transf_matrix[1][1] 0.0211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009568 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 401 401 SF4 SF4 . C 3 5XR A 1 402 402 5XR 5XR . D 4 PO4 A 1 403 403 PO4 PO4 . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 504 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 502 HOH HOH . E 5 HOH A 5 505 506 HOH HOH . E 5 HOH A 6 506 505 HOH HOH . E 5 HOH A 7 507 507 HOH HOH . E 5 HOH A 8 508 512 HOH HOH . E 5 HOH A 9 509 518 HOH HOH . E 5 HOH A 10 510 509 HOH HOH . E 5 HOH A 11 511 511 HOH HOH . E 5 HOH A 12 512 520 HOH HOH . E 5 HOH A 13 513 513 HOH HOH . E 5 HOH A 14 514 514 HOH HOH . E 5 HOH A 15 515 515 HOH HOH . E 5 HOH A 16 516 508 HOH HOH . E 5 HOH A 17 517 517 HOH HOH . E 5 HOH A 18 518 516 HOH HOH . E 5 HOH A 19 519 510 HOH HOH . E 5 HOH A 20 520 519 HOH HOH . E 5 HOH A 21 521 522 HOH HOH . E 5 HOH A 22 522 521 HOH HOH . E 5 HOH A 23 523 524 HOH HOH . E 5 HOH A 24 524 525 HOH HOH . E 5 HOH A 25 525 527 HOH HOH . E 5 HOH A 26 526 523 HOH HOH . E 5 HOH A 27 527 531 HOH HOH . E 5 HOH A 28 528 530 HOH HOH . E 5 HOH A 29 529 526 HOH HOH . E 5 HOH A 30 530 532 HOH HOH . E 5 HOH A 31 531 529 HOH HOH . E 5 HOH A 32 532 537 HOH HOH . E 5 HOH A 33 533 528 HOH HOH . E 5 HOH A 34 534 535 HOH HOH . E 5 HOH A 35 535 533 HOH HOH . E 5 HOH A 36 536 536 HOH HOH . E 5 HOH A 37 537 538 HOH HOH . E 5 HOH A 38 538 534 HOH HOH . E 5 HOH A 39 539 539 HOH HOH . E 5 HOH A 40 540 541 HOH HOH . E 5 HOH A 41 541 540 HOH HOH . E 5 HOH A 42 542 542 HOH HOH . E 5 HOH A 43 543 543 HOH HOH . E 5 HOH A 44 544 545 HOH HOH . E 5 HOH A 45 545 547 HOH HOH . E 5 HOH A 46 546 560 HOH HOH . E 5 HOH A 47 547 546 HOH HOH . E 5 HOH A 48 548 566 HOH HOH . E 5 HOH A 49 549 544 HOH HOH . E 5 HOH A 50 550 548 HOH HOH . E 5 HOH A 51 551 552 HOH HOH . E 5 HOH A 52 552 555 HOH HOH . E 5 HOH A 53 553 558 HOH HOH . E 5 HOH A 54 554 551 HOH HOH . E 5 HOH A 55 555 553 HOH HOH . E 5 HOH A 56 556 549 HOH HOH . E 5 HOH A 57 557 554 HOH HOH . E 5 HOH A 58 558 561 HOH HOH . E 5 HOH A 59 559 557 HOH HOH . E 5 HOH A 60 560 563 HOH HOH . E 5 HOH A 61 561 565 HOH HOH . E 5 HOH A 62 562 556 HOH HOH . E 5 HOH A 63 563 550 HOH HOH . E 5 HOH A 64 564 559 HOH HOH . E 5 HOH A 65 565 564 HOH HOH . E 5 HOH A 66 566 576 HOH HOH . E 5 HOH A 67 567 571 HOH HOH . E 5 HOH A 68 568 570 HOH HOH . E 5 HOH A 69 569 562 HOH HOH . E 5 HOH A 70 570 569 HOH HOH . E 5 HOH A 71 571 573 HOH HOH . E 5 HOH A 72 572 567 HOH HOH . E 5 HOH A 73 573 568 HOH HOH . E 5 HOH A 74 574 582 HOH HOH . E 5 HOH A 75 575 580 HOH HOH . E 5 HOH A 76 576 584 HOH HOH . E 5 HOH A 77 577 577 HOH HOH . E 5 HOH A 78 578 581 HOH HOH . E 5 HOH A 79 579 575 HOH HOH . E 5 HOH A 80 580 572 HOH HOH . E 5 HOH A 81 581 588 HOH HOH . E 5 HOH A 82 582 583 HOH HOH . E 5 HOH A 83 583 578 HOH HOH . E 5 HOH A 84 584 586 HOH HOH . E 5 HOH A 85 585 579 HOH HOH . E 5 HOH A 86 586 574 HOH HOH . E 5 HOH A 87 587 595 HOH HOH . E 5 HOH A 88 588 590 HOH HOH . E 5 HOH A 89 589 591 HOH HOH . E 5 HOH A 90 590 594 HOH HOH . E 5 HOH A 91 591 592 HOH HOH . E 5 HOH A 92 592 597 HOH HOH . E 5 HOH A 93 593 593 HOH HOH . E 5 HOH A 94 594 587 HOH HOH . E 5 HOH A 95 595 598 HOH HOH . E 5 HOH A 96 596 585 HOH HOH . E 5 HOH A 97 597 589 HOH HOH . E 5 HOH A 98 598 601 HOH HOH . E 5 HOH A 99 599 599 HOH HOH . E 5 HOH A 100 600 602 HOH HOH . E 5 HOH A 101 601 596 HOH HOH . E 5 HOH A 102 602 605 HOH HOH . E 5 HOH A 103 603 603 HOH HOH . E 5 HOH A 104 604 600 HOH HOH . E 5 HOH A 105 605 608 HOH HOH . E 5 HOH A 106 606 612 HOH HOH . E 5 HOH A 107 607 604 HOH HOH . E 5 HOH A 108 608 617 HOH HOH . E 5 HOH A 109 609 614 HOH HOH . E 5 HOH A 110 610 618 HOH HOH . E 5 HOH A 111 611 606 HOH HOH . E 5 HOH A 112 612 610 HOH HOH . E 5 HOH A 113 613 622 HOH HOH . E 5 HOH A 114 614 607 HOH HOH . E 5 HOH A 115 615 611 HOH HOH . E 5 HOH A 116 616 621 HOH HOH . E 5 HOH A 117 617 619 HOH HOH . E 5 HOH A 118 618 613 HOH HOH . E 5 HOH A 119 619 616 HOH HOH . E 5 HOH A 120 620 615 HOH HOH . E 5 HOH A 121 621 609 HOH HOH . E 5 HOH A 122 622 629 HOH HOH . E 5 HOH A 123 623 624 HOH HOH . E 5 HOH A 124 624 626 HOH HOH . E 5 HOH A 125 625 625 HOH HOH . E 5 HOH A 126 626 620 HOH HOH . E 5 HOH A 127 627 634 HOH HOH . E 5 HOH A 128 628 640 HOH HOH . E 5 HOH A 129 629 631 HOH HOH . E 5 HOH A 130 630 635 HOH HOH . E 5 HOH A 131 631 637 HOH HOH . E 5 HOH A 132 632 639 HOH HOH . E 5 HOH A 133 633 623 HOH HOH . E 5 HOH A 134 634 627 HOH HOH . E 5 HOH A 135 635 633 HOH HOH . E 5 HOH A 136 636 632 HOH HOH . E 5 HOH A 137 637 638 HOH HOH . E 5 HOH A 138 638 636 HOH HOH . E 5 HOH A 139 639 649 HOH HOH . E 5 HOH A 140 640 628 HOH HOH . E 5 HOH A 141 641 630 HOH HOH . E 5 HOH A 142 642 655 HOH HOH . E 5 HOH A 143 643 651 HOH HOH . E 5 HOH A 144 644 646 HOH HOH . E 5 HOH A 145 645 647 HOH HOH . E 5 HOH A 146 646 641 HOH HOH . E 5 HOH A 147 647 643 HOH HOH . E 5 HOH A 148 648 653 HOH HOH . E 5 HOH A 149 649 645 HOH HOH . E 5 HOH A 150 650 642 HOH HOH . E 5 HOH A 151 651 648 HOH HOH . E 5 HOH A 152 652 659 HOH HOH . E 5 HOH A 153 653 644 HOH HOH . E 5 HOH A 154 654 654 HOH HOH . E 5 HOH A 155 655 652 HOH HOH . E 5 HOH A 156 656 656 HOH HOH . E 5 HOH A 157 657 650 HOH HOH . E 5 HOH A 158 658 658 HOH HOH . E 5 HOH A 159 659 662 HOH HOH . E 5 HOH A 160 660 661 HOH HOH . E 5 HOH A 161 661 663 HOH HOH . E 5 HOH A 162 662 667 HOH HOH . E 5 HOH A 163 663 660 HOH HOH . E 5 HOH A 164 664 676 HOH HOH . E 5 HOH A 165 665 657 HOH HOH . E 5 HOH A 166 666 664 HOH HOH . E 5 HOH A 167 667 670 HOH HOH . E 5 HOH A 168 668 665 HOH HOH . E 5 HOH A 169 669 672 HOH HOH . E 5 HOH A 170 670 671 HOH HOH . E 5 HOH A 171 671 673 HOH HOH . E 5 HOH A 172 672 666 HOH HOH . E 5 HOH A 173 673 674 HOH HOH . E 5 HOH A 174 674 668 HOH HOH . E 5 HOH A 175 675 678 HOH HOH . E 5 HOH A 176 676 680 HOH HOH . E 5 HOH A 177 677 669 HOH HOH . E 5 HOH A 178 678 685 HOH HOH . E 5 HOH A 179 679 681 HOH HOH . E 5 HOH A 180 680 675 HOH HOH . E 5 HOH A 181 681 682 HOH HOH . E 5 HOH A 182 682 679 HOH HOH . E 5 HOH A 183 683 686 HOH HOH . E 5 HOH A 184 684 677 HOH HOH . E 5 HOH A 185 685 684 HOH HOH . E 5 HOH A 186 686 691 HOH HOH . E 5 HOH A 187 687 695 HOH HOH . E 5 HOH A 188 688 689 HOH HOH . E 5 HOH A 189 689 693 HOH HOH . E 5 HOH A 190 690 690 HOH HOH . E 5 HOH A 191 691 687 HOH HOH . E 5 HOH A 192 692 688 HOH HOH . E 5 HOH A 193 693 683 HOH HOH . E 5 HOH A 194 694 698 HOH HOH . E 5 HOH A 195 695 692 HOH HOH . E 5 HOH A 196 696 694 HOH HOH . E 5 HOH A 197 697 697 HOH HOH . E 5 HOH A 198 698 699 HOH HOH . E 5 HOH A 199 699 696 HOH HOH . E 5 HOH A 200 700 705 HOH HOH . E 5 HOH A 201 701 700 HOH HOH . E 5 HOH A 202 702 701 HOH HOH . E 5 HOH A 203 703 702 HOH HOH . E 5 HOH A 204 704 703 HOH HOH . E 5 HOH A 205 705 704 HOH HOH . E 5 HOH A 206 706 706 HOH HOH . E 5 HOH A 207 707 710 HOH HOH . E 5 HOH A 208 708 709 HOH HOH . E 5 HOH A 209 709 707 HOH HOH . E 5 HOH A 210 710 708 HOH HOH . E 5 HOH A 211 711 713 HOH HOH . E 5 HOH A 212 712 711 HOH HOH . E 5 HOH A 213 713 712 HOH HOH . E 5 HOH A 214 714 714 HOH HOH . E 5 HOH A 215 715 715 HOH HOH . E 5 HOH A 216 716 716 HOH HOH . E 5 HOH A 217 717 717 HOH HOH . E 5 HOH A 218 718 718 HOH HOH . E 5 HOH A 219 719 720 HOH HOH . E 5 HOH A 220 720 719 HOH HOH . E 5 HOH A 221 721 721 HOH HOH . E 5 HOH A 222 722 724 HOH HOH . E 5 HOH A 223 723 722 HOH HOH . E 5 HOH A 224 724 723 HOH HOH . E 5 HOH A 225 725 726 HOH HOH . E 5 HOH A 226 726 725 HOH HOH . E 5 HOH A 227 727 727 HOH HOH . E 5 HOH A 228 728 728 HOH HOH . E 5 HOH A 229 729 729 HOH HOH . E 5 HOH A 230 730 731 HOH HOH . E 5 HOH A 231 731 730 HOH HOH . E 5 HOH A 232 732 732 HOH HOH . E 5 HOH A 233 733 736 HOH HOH . E 5 HOH A 234 734 735 HOH HOH . E 5 HOH A 235 735 733 HOH HOH . E 5 HOH A 236 736 734 HOH HOH . E 5 HOH A 237 737 737 HOH HOH . E 5 HOH A 238 738 738 HOH HOH . E 5 HOH A 239 739 739 HOH HOH . E 5 HOH A 240 740 740 HOH HOH . E 5 HOH A 241 741 741 HOH HOH . E 5 HOH A 242 742 743 HOH HOH . E 5 HOH A 243 743 742 HOH HOH . E 5 HOH A 244 744 744 HOH HOH . E 5 HOH A 245 745 745 HOH HOH . E 5 HOH A 246 746 746 HOH HOH . E 5 HOH A 247 747 747 HOH HOH . E 5 HOH A 248 748 748 HOH HOH . E 5 HOH A 249 749 750 HOH HOH . E 5 HOH A 250 750 749 HOH HOH . E 5 HOH A 251 751 751 HOH HOH . E 5 HOH A 252 752 752 HOH HOH . E 5 HOH A 253 753 754 HOH HOH . E 5 HOH A 254 754 756 HOH HOH . E 5 HOH A 255 755 755 HOH HOH . E 5 HOH A 256 756 753 HOH HOH . E 5 HOH A 257 757 757 HOH HOH . E 5 HOH A 258 758 758 HOH HOH . E 5 HOH A 259 759 759 HOH HOH . E 5 HOH A 260 760 760 HOH HOH . E 5 HOH A 261 761 762 HOH HOH . E 5 HOH A 262 762 761 HOH HOH . E 5 HOH A 263 763 764 HOH HOH . E 5 HOH A 264 764 768 HOH HOH . E 5 HOH A 265 765 763 HOH HOH . E 5 HOH A 266 766 767 HOH HOH . E 5 HOH A 267 767 766 HOH HOH . E 5 HOH A 268 768 769 HOH HOH . E 5 HOH A 269 769 765 HOH HOH . E 5 HOH A 270 770 770 HOH HOH . E 5 HOH A 271 771 771 HOH HOH . E 5 HOH A 272 772 772 HOH HOH . E 5 HOH A 273 773 774 HOH HOH . E 5 HOH A 274 774 773 HOH HOH . E 5 HOH A 275 775 775 HOH HOH . E 5 HOH A 276 776 776 HOH HOH . E 5 HOH A 277 777 778 HOH HOH . E 5 HOH A 278 778 777 HOH HOH . E 5 HOH A 279 779 779 HOH HOH . E 5 HOH A 280 780 781 HOH HOH . E 5 HOH A 281 781 782 HOH HOH . E 5 HOH A 282 782 783 HOH HOH . E 5 HOH A 283 783 784 HOH HOH . E 5 HOH A 284 784 785 HOH HOH . E 5 HOH A 285 785 786 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 -16.817 1.773 86.726 1 32.09 ? P PO4 403 A 1 HETATM 2 O O1 PO4 . . . D 4 -17.281 2.169 85.345 1 30.37 ? O1 PO4 403 A 1 HETATM 3 O O2 PO4 . . . D 4 -15.696 2.722 87.098 1 32.13 ? O2 PO4 403 A 1 HETATM 4 O O3 PO4 . . . D 4 -16.327 0.333 86.749 1 25.85 ? O3 PO4 403 A 1 HETATM 5 O O4 PO4 . . . D 4 -17.976 1.91 87.696 1 33.65 ? O4 PO4 403 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #