data_6ORR # _model_server_result.job_id HfVFnNpNu0JsU0xsDmQwuw _model_server_result.datetime_utc '2025-08-30 23:40:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6orr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":301}' # _entry.id 6ORR # _exptl.entry_id 6ORR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509.514 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-{9-amino-6-[(3-carbamoylphenyl)ethynyl]-5,6,7,8,9-pentadeoxy-D-glycero-alpha-L-talo-decofuranuronosyl}-9H-purin-6-amine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 82.519 _cell.angle_beta 81.844 _cell.angle_gamma 68.353 _cell.entry_id 6ORR _cell.length_a 46.074 _cell.length_b 62.203 _cell.length_c 108.202 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ORR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,N 1 1 B,J,O 2 1 C,K,L,P 3 1 D,M,Q 4 1 A,D,E,F,G,H,I,M,N,Q 5 1 B,C,J,K,L,O,P 5 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_465 x-1,y+1,z 1 0 0 0 1 0 0 0 1 -23.128114 57.816084 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 K N N ? 2 M N N # _chem_comp.formula 'C24 H27 N7 O6' _chem_comp.formula_weight 509.514 _chem_comp.id N37 _chem_comp.mon_nstd_flag . _chem_comp.name 9-{9-amino-6-[(3-carbamoylphenyl)ethynyl]-5,6,7,8,9-pentadeoxy-D-glycero-alpha-L-talo-decofuranuronosyl}-9H-purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C3 N37 sing 250 n n N5 C5 N37 doub 251 n y N5 C4 N37 sing 252 n y C3 C4 N37 doub 253 n y C3 N3 N37 sing 254 n y C5 N1 N37 sing 255 n y C4 C1 N37 sing 256 n y N3 C2 N37 doub 257 n y N1 C1 N37 sing 258 n y N1 C6 N37 sing 259 n n C1 N2 N37 doub 260 n y O2 C7 N37 sing 261 n n C7 C6 N37 sing 262 n n C7 C8 N37 sing 263 n n C2 N2 N37 sing 264 n y C6 O1 N37 sing 265 n n C8 C9 N37 sing 266 n n C8 O3 N37 sing 267 n n O6 C24 N37 doub 268 n n O1 C9 N37 sing 269 n n N7 C24 N37 sing 270 n n C24 C22 N37 sing 271 n n C10 C9 N37 sing 272 n n C10 C11 N37 sing 273 n n C23 C22 N37 doub 274 n y C23 C18 N37 sing 275 n y C22 C21 N37 sing 276 n y C11 C16 N37 sing 277 n n C11 C12 N37 sing 278 n n C16 C17 N37 trip 279 n n C17 C18 N37 sing 280 n n C18 C19 N37 doub 281 n y C21 C20 N37 doub 282 n y C19 C20 N37 sing 283 n y C12 C13 N37 sing 284 n n C13 C14 N37 sing 285 n n C14 N6 N37 sing 286 n n C14 C15 N37 sing 287 n n O5 C15 N37 doub 288 n n C15 O4 N37 sing 289 n n C2 H1 N37 sing 290 n n C5 H2 N37 sing 291 n n C6 H3 N37 sing 292 n n C7 H4 N37 sing 293 n n C8 H5 N37 sing 294 n n C9 H6 N37 sing 295 n n C10 H7 N37 sing 296 n n C10 H8 N37 sing 297 n n C11 H9 N37 sing 298 n n C12 H10 N37 sing 299 n n C12 H11 N37 sing 300 n n C13 H12 N37 sing 301 n n C13 H13 N37 sing 302 n n C14 H14 N37 sing 303 n n C19 H15 N37 sing 304 n n C20 H16 N37 sing 305 n n C21 H17 N37 sing 306 n n C23 H18 N37 sing 307 n n N4 H19 N37 sing 308 n n N4 H20 N37 sing 309 n n N6 H21 N37 sing 310 n n N6 H22 N37 sing 311 n n N7 H24 N37 sing 312 n n N7 H25 N37 sing 313 n n O2 H26 N37 sing 314 n n O3 H27 N37 sing 315 n n O4 H28 N37 sing 316 n n # _atom_sites.entry_id 6ORR _atom_sites.fract_transf_matrix[1][1] 0.021704 _atom_sites.fract_transf_matrix[1][2] -0.008614 _atom_sites.fract_transf_matrix[1][3] -0.00239 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017296 _atom_sites.fract_transf_matrix[2][3] -0.001469 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 N37 A 1 301 301 N37 NS1 . F 3 GOL A 1 302 601 GOL GOL . G 3 GOL A 1 303 701 GOL GOL . H 3 GOL A 1 304 801 GOL GOL . I 3 GOL A 1 305 901 GOL GOL . J 2 N37 B 1 301 301 N37 NS1 . K 2 N37 C 1 301 301 N37 NS1 . L 3 GOL C 1 302 401 GOL GOL . M 2 N37 D 1 301 301 N37 NS1 . N 4 HOH A 1 401 152 HOH HOH . N 4 HOH A 2 402 139 HOH HOH . N 4 HOH A 3 403 150 HOH HOH . N 4 HOH A 4 404 151 HOH HOH . N 4 HOH A 5 405 66 HOH HOH . N 4 HOH A 6 406 33 HOH HOH . N 4 HOH A 7 407 88 HOH HOH . N 4 HOH A 8 408 7 HOH HOH . N 4 HOH A 9 409 129 HOH HOH . N 4 HOH A 10 410 98 HOH HOH . N 4 HOH A 11 411 73 HOH HOH . N 4 HOH A 12 412 1 HOH HOH . N 4 HOH A 13 413 40 HOH HOH . N 4 HOH A 14 414 145 HOH HOH . N 4 HOH A 15 415 138 HOH HOH . N 4 HOH A 16 416 106 HOH HOH . N 4 HOH A 17 417 23 HOH HOH . N 4 HOH A 18 418 12 HOH HOH . N 4 HOH A 19 419 172 HOH HOH . N 4 HOH A 20 420 65 HOH HOH . N 4 HOH A 21 421 83 HOH HOH . N 4 HOH A 22 422 136 HOH HOH . N 4 HOH A 23 423 35 HOH HOH . N 4 HOH A 24 424 122 HOH HOH . N 4 HOH A 25 425 72 HOH HOH . N 4 HOH A 26 426 80 HOH HOH . N 4 HOH A 27 427 77 HOH HOH . N 4 HOH A 28 428 125 HOH HOH . N 4 HOH A 29 429 170 HOH HOH . N 4 HOH A 30 430 164 HOH HOH . N 4 HOH A 31 431 108 HOH HOH . N 4 HOH A 32 432 173 HOH HOH . N 4 HOH A 33 433 117 HOH HOH . N 4 HOH A 34 434 167 HOH HOH . N 4 HOH A 35 435 17 HOH HOH . N 4 HOH A 36 436 26 HOH HOH . N 4 HOH A 37 437 144 HOH HOH . N 4 HOH A 38 438 100 HOH HOH . N 4 HOH A 39 439 46 HOH HOH . N 4 HOH A 40 440 126 HOH HOH . N 4 HOH A 41 441 133 HOH HOH . N 4 HOH A 42 442 134 HOH HOH . N 4 HOH A 43 443 71 HOH HOH . N 4 HOH A 44 444 61 HOH HOH . N 4 HOH A 45 445 48 HOH HOH . N 4 HOH A 46 446 15 HOH HOH . N 4 HOH A 47 447 70 HOH HOH . N 4 HOH A 48 448 166 HOH HOH . N 4 HOH A 49 449 142 HOH HOH . N 4 HOH A 50 450 137 HOH HOH . N 4 HOH A 51 451 102 HOH HOH . N 4 HOH A 52 452 97 HOH HOH . N 4 HOH A 53 453 21 HOH HOH . N 4 HOH A 54 454 24 HOH HOH . N 4 HOH A 55 455 37 HOH HOH . N 4 HOH A 56 456 85 HOH HOH . N 4 HOH A 57 457 91 HOH HOH . N 4 HOH A 58 458 143 HOH HOH . N 4 HOH A 59 459 57 HOH HOH . O 4 HOH B 1 401 154 HOH HOH . O 4 HOH B 2 402 79 HOH HOH . O 4 HOH B 3 403 140 HOH HOH . O 4 HOH B 4 404 3 HOH HOH . O 4 HOH B 5 405 153 HOH HOH . O 4 HOH B 6 406 148 HOH HOH . O 4 HOH B 7 407 28 HOH HOH . O 4 HOH B 8 408 120 HOH HOH . O 4 HOH B 9 409 124 HOH HOH . O 4 HOH B 10 410 69 HOH HOH . O 4 HOH B 11 411 107 HOH HOH . O 4 HOH B 12 412 34 HOH HOH . O 4 HOH B 13 413 22 HOH HOH . O 4 HOH B 14 414 50 HOH HOH . O 4 HOH B 15 415 43 HOH HOH . O 4 HOH B 16 416 118 HOH HOH . O 4 HOH B 17 417 156 HOH HOH . O 4 HOH B 18 418 104 HOH HOH . O 4 HOH B 19 419 2 HOH HOH . O 4 HOH B 20 420 16 HOH HOH . O 4 HOH B 21 421 165 HOH HOH . O 4 HOH B 22 422 30 HOH HOH . O 4 HOH B 23 423 10 HOH HOH . O 4 HOH B 24 424 62 HOH HOH . O 4 HOH B 25 425 63 HOH HOH . O 4 HOH B 26 426 14 HOH HOH . O 4 HOH B 27 427 179 HOH HOH . O 4 HOH B 28 428 29 HOH HOH . O 4 HOH B 29 429 123 HOH HOH . O 4 HOH B 30 430 27 HOH HOH . O 4 HOH B 31 431 58 HOH HOH . O 4 HOH B 32 432 168 HOH HOH . O 4 HOH B 33 433 54 HOH HOH . O 4 HOH B 34 434 99 HOH HOH . P 4 HOH C 1 401 159 HOH HOH . P 4 HOH C 2 402 38 HOH HOH . P 4 HOH C 3 403 82 HOH HOH . P 4 HOH C 4 404 44 HOH HOH . P 4 HOH C 5 405 74 HOH HOH . P 4 HOH C 6 406 5 HOH HOH . P 4 HOH C 7 407 32 HOH HOH . P 4 HOH C 8 408 56 HOH HOH . P 4 HOH C 9 409 177 HOH HOH . P 4 HOH C 10 410 94 HOH HOH . P 4 HOH C 11 411 67 HOH HOH . P 4 HOH C 12 412 111 HOH HOH . P 4 HOH C 13 413 78 HOH HOH . P 4 HOH C 14 414 110 HOH HOH . P 4 HOH C 15 415 11 HOH HOH . P 4 HOH C 16 416 155 HOH HOH . P 4 HOH C 17 417 51 HOH HOH . P 4 HOH C 18 418 87 HOH HOH . P 4 HOH C 19 419 131 HOH HOH . P 4 HOH C 20 420 141 HOH HOH . P 4 HOH C 21 421 18 HOH HOH . P 4 HOH C 22 422 31 HOH HOH . P 4 HOH C 23 423 130 HOH HOH . P 4 HOH C 24 424 45 HOH HOH . P 4 HOH C 25 425 149 HOH HOH . P 4 HOH C 26 426 60 HOH HOH . P 4 HOH C 27 427 119 HOH HOH . P 4 HOH C 28 428 55 HOH HOH . P 4 HOH C 29 429 76 HOH HOH . P 4 HOH C 30 430 42 HOH HOH . P 4 HOH C 31 431 6 HOH HOH . P 4 HOH C 32 432 49 HOH HOH . P 4 HOH C 33 433 169 HOH HOH . P 4 HOH C 34 434 52 HOH HOH . P 4 HOH C 35 435 109 HOH HOH . P 4 HOH C 36 436 163 HOH HOH . P 4 HOH C 37 437 178 HOH HOH . P 4 HOH C 38 438 39 HOH HOH . P 4 HOH C 39 439 113 HOH HOH . P 4 HOH C 40 440 171 HOH HOH . P 4 HOH C 41 441 157 HOH HOH . P 4 HOH C 42 442 86 HOH HOH . P 4 HOH C 43 443 147 HOH HOH . P 4 HOH C 44 444 160 HOH HOH . P 4 HOH C 45 445 19 HOH HOH . P 4 HOH C 46 446 20 HOH HOH . P 4 HOH C 47 447 116 HOH HOH . P 4 HOH C 48 448 41 HOH HOH . P 4 HOH C 49 449 90 HOH HOH . P 4 HOH C 50 450 135 HOH HOH . P 4 HOH C 51 451 89 HOH HOH . P 4 HOH C 52 452 4 HOH HOH . P 4 HOH C 53 453 81 HOH HOH . P 4 HOH C 54 454 146 HOH HOH . Q 4 HOH D 1 401 25 HOH HOH . Q 4 HOH D 2 402 68 HOH HOH . Q 4 HOH D 3 403 128 HOH HOH . Q 4 HOH D 4 404 64 HOH HOH . Q 4 HOH D 5 405 75 HOH HOH . Q 4 HOH D 6 406 103 HOH HOH . Q 4 HOH D 7 407 101 HOH HOH . Q 4 HOH D 8 408 13 HOH HOH . Q 4 HOH D 9 409 161 HOH HOH . Q 4 HOH D 10 410 112 HOH HOH . Q 4 HOH D 11 411 175 HOH HOH . Q 4 HOH D 12 412 96 HOH HOH . Q 4 HOH D 13 413 127 HOH HOH . Q 4 HOH D 14 414 9 HOH HOH . Q 4 HOH D 15 415 47 HOH HOH . Q 4 HOH D 16 416 59 HOH HOH . Q 4 HOH D 17 417 95 HOH HOH . Q 4 HOH D 18 418 114 HOH HOH . Q 4 HOH D 19 419 8 HOH HOH . Q 4 HOH D 20 420 176 HOH HOH . Q 4 HOH D 21 421 162 HOH HOH . Q 4 HOH D 22 422 36 HOH HOH . Q 4 HOH D 23 423 174 HOH HOH . Q 4 HOH D 24 424 105 HOH HOH . Q 4 HOH D 25 425 132 HOH HOH . Q 4 HOH D 26 426 92 HOH HOH . Q 4 HOH D 27 427 53 HOH HOH . Q 4 HOH D 28 428 93 HOH HOH . Q 4 HOH D 29 429 158 HOH HOH . Q 4 HOH D 30 430 115 HOH HOH . Q 4 HOH D 31 431 84 HOH HOH . Q 4 HOH D 32 432 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 N37 . . . M 2 12.463 0.994 -46.217 1 21.89 ? C1 N37 301 D 1 HETATM 2 C C2 N37 . . . M 2 14.538 1.676 -45.984 1 24.69 ? C2 N37 301 D 1 HETATM 3 C C3 N37 . . . M 2 14.003 -0.332 -44.991 1 24.68 ? C3 N37 301 D 1 HETATM 4 C C4 N37 . . . M 2 12.731 -0.186 -45.458 1 22.12 ? C4 N37 301 D 1 HETATM 5 C C5 N37 . . . M 2 10.599 -0.183 -46.103 1 24.68 ? C5 N37 301 D 1 HETATM 6 C C6 N37 . . . M 2 10.578 1.854 -47.278 1 25.41 ? C6 N37 301 D 1 HETATM 7 C C7 N37 . . . M 2 9.585 1.279 -48.228 1 30.23 ? C7 N37 301 D 1 HETATM 8 C C8 N37 . . . M 2 8.544 2.303 -48.377 1 30.67 ? C8 N37 301 D 1 HETATM 9 C C9 N37 . . . M 2 8.715 3.275 -47.254 1 26.39 ? C9 N37 301 D 1 HETATM 10 C C10 N37 . . . M 2 7.457 3.41 -46.456 1 20.83 ? C10 N37 301 D 1 HETATM 11 C C11 N37 . . . M 2 6.338 4.052 -47.285 1 24.71 ? C11 N37 301 D 1 HETATM 12 C C12 N37 . . . M 2 6.812 5.343 -47.961 1 31.7 ? C12 N37 301 D 1 HETATM 13 C C13 N37 . . . M 2 7.064 6.447 -46.933 1 37.52 ? C13 N37 301 D 1 HETATM 14 C C14 N37 . . . M 2 6.262 7.697 -47.29 1 45.1 ? C14 N37 301 D 1 HETATM 15 C C15 N37 . . . M 2 7.205 8.882 -47.481 1 46.34 ? C15 N37 301 D 1 HETATM 16 C C16 N37 . . . M 2 5.149 4.356 -46.375 1 25.2 ? C16 N37 301 D 1 HETATM 17 C C17 N37 . . . M 2 4.224 4.589 -45.67 1 23.93 ? C17 N37 301 D 1 HETATM 18 C C18 N37 . . . M 2 3.031 4.894 -44.769 1 25.66 ? C18 N37 301 D 1 HETATM 19 C C19 N37 . . . M 2 1.972 5.642 -45.256 1 26.82 ? C19 N37 301 D 1 HETATM 20 C C20 N37 . . . M 2 0.886 5.922 -44.443 1 26.22 ? C20 N37 301 D 1 HETATM 21 C C21 N37 . . . M 2 0.859 5.453 -43.14 1 25.86 ? C21 N37 301 D 1 HETATM 22 C C22 N37 . . . M 2 1.917 4.705 -42.65 1 25.89 ? C22 N37 301 D 1 HETATM 23 C C23 N37 . . . M 2 3.004 4.427 -43.464 1 27.2 ? C23 N37 301 D 1 HETATM 24 C C24 N37 . . . M 2 1.885 4.188 -41.213 1 22.39 ? C24 N37 301 D 1 HETATM 25 N N1 N37 . . . M 2 11.23 0.853 -46.509 1 25.33 ? N1 N37 301 D 1 HETATM 26 N N2 N37 . . . M 2 13.331 1.952 -46.508 1 20.96 ? N2 N37 301 D 1 HETATM 27 N N3 N37 . . . M 2 14.89 0.604 -45.262 1 26.01 ? N3 N37 301 D 1 HETATM 28 N N4 N37 . . . M 2 14.377 -1.496 -44.21 1 28.67 ? N4 N37 301 D 1 HETATM 29 N N5 N37 . . . M 2 11.434 -0.984 -45.391 1 24.59 ? N5 N37 301 D 1 HETATM 30 N N6 N37 . . . M 2 5.536 7.475 -48.524 1 48.55 ? N6 N37 301 D 1 HETATM 31 N N7 N37 . . . M 2 3.114 4.088 -40.447 1 14.05 ? N7 N37 301 D 1 HETATM 32 O O1 N37 . . . M 2 9.808 2.765 -46.405 1 28.58 ? O1 N37 301 D 1 HETATM 33 O O2 N37 . . . M 2 10.203 1.028 -49.504 1 30.05 ? O2 N37 301 D 1 HETATM 34 O O3 N37 . . . M 2 8.726 2.999 -49.625 1 26.22 ? O3 N37 301 D 1 HETATM 35 O O4 N37 . . . M 2 6.745 10.053 -47.504 1 47.78 ? O4 N37 301 D 1 HETATM 36 O O5 N37 . . . M 2 8.443 8.687 -47.613 1 46.83 ? O5 N37 301 D 1 HETATM 37 O O6 N37 . . . M 2 0.855 3.866 -40.724 1 21.53 ? O6 N37 301 D 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 399 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #