data_6ORV
#
_model_server_result.job_id            2HcIdOI0RHzxqAt1xI_3bw 
_model_server_result.datetime_utc      '2024-11-23 22:33:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6orv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6ORV 
#
_exptl.entry_id    6ORV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              856.831 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{(3S,8S)-3-{4-[(3,4-dichlorophenyl)methoxy]phenyl}-7-[(1S)-1-phenylpropyl]-2,3,6,7,8,9-hexahydro[1,4]dioxino[2,3-g]isoquinoline-8-carbonyl}-4-(2,3-dimethylpyridin-4-yl)-L-phenylalanine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ORV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ORV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 NP CYS 22 1_555 D SG CYS 96 NP CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 D SG CYS 99 NP CYS 99 1_555 D SG CYS 107 NP CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf3 E SG CYS 235 RP CYS 226 1_555 E SG CYS 305 RP CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C50 H47 Cl2 N3 O6' 
_chem_comp.formula_weight    856.831 
_chem_comp.id                N2V 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{(3S,8S)-3-{4-[(3,4-dichlorophenyl)methoxy]phenyl}-7-[(1S)-1-phenylpropyl]-2,3,6,7,8,9-hexahydro[1,4]dioxino[2,3-g]isoquinoline-8-carbonyl}-4-(2,3-dimethylpyridin-4-yl)-L-phenylalanine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C38 C39 N2V doub 235 n y 
C38 C36 N2V sing 236 n y 
CL37 C36 N2V sing 237 n n 
C39 C32 N2V sing 238 n y 
C36 C34 N2V doub 239 n y 
O23 C24 N2V sing 240 n n 
O23 C22 N2V sing 241 n n 
C24 C25 N2V sing 242 n n 
C41 C40 N2V doub 243 n y 
C41 C26 N2V sing 244 n y 
C40 C29 N2V sing 245 n y 
C25 C26 N2V sing 246 n n 
C25 O42 N2V sing 247 n n 
C26 C27 N2V doub 248 n y 
C29 O30 N2V sing 249 n n 
C29 C28 N2V doub 250 n y 
O30 C31 N2V sing 251 n n 
C32 C31 N2V sing 252 n n 
C32 C33 N2V doub 253 n y 
C27 C28 N2V sing 254 n y 
C34 C33 N2V sing 255 n y 
C34 CL35 N2V sing 256 n n 
C22 C43 N2V doub 257 n y 
C22 C21 N2V sing 258 n y 
C43 C44 N2V sing 259 n y 
O42 C21 N2V sing 260 n n 
C21 C20 N2V doub 261 n y 
C44 C45 N2V sing 262 n n 
C44 C19 N2V doub 263 n y 
C45 C07 N2V sing 264 n n 
C61 C60 N2V doub 265 n y 
C61 C48 N2V sing 266 n y 
C60 C51 N2V sing 267 n y 
C20 C19 N2V sing 268 n y 
C19 C18 N2V sing 269 n n 
C47 C48 N2V sing 270 n n 
C47 C04 N2V sing 271 n n 
C48 C49 N2V doub 272 n y 
C59 C58 N2V doub 273 n y 
C59 C52 N2V sing 274 n y 
C51 C52 N2V sing 275 n n 
C51 C50 N2V doub 276 n y 
C58 N57 N2V sing 277 n y 
C52 C53 N2V doub 278 n y 
N57 C55 N2V doub 279 n y 
C53 C55 N2V sing 280 n y 
C53 C54 N2V sing 281 n n 
C55 C56 N2V sing 282 n n 
N05 C04 N2V sing 283 n n 
N05 C06 N2V sing 284 n n 
C07 C06 N2V sing 285 n n 
C07 N08 N2V sing 286 n n 
C18 N08 N2V sing 287 n n 
C04 C02 N2V sing 288 n n 
C49 C50 N2V sing 289 n y 
C06 O46 N2V doub 290 n n 
N08 C09 N2V sing 291 n n 
C02 O03 N2V doub 292 n n 
C02 O01 N2V sing 293 n n 
C16 C09 N2V sing 294 n n 
C16 C17 N2V sing 295 n n 
C09 C10 N2V sing 296 n n 
C10 C15 N2V doub 297 n y 
C10 C11 N2V sing 298 n y 
C15 C14 N2V sing 299 n y 
C11 C12 N2V doub 300 n y 
C14 C13 N2V doub 301 n y 
C12 C13 N2V sing 302 n y 
C25 H1 N2V sing 303 n n 
C24 H2 N2V sing 304 n n 
C24 H3 N2V sing 305 n n 
C20 H4 N2V sing 306 n n 
C12 H5 N2V sing 307 n n 
C13 H6 N2V sing 308 n n 
C17 H7 N2V sing 309 n n 
C17 H8 N2V sing 310 n n 
C17 H9 N2V sing 311 n n 
C16 H10 N2V sing 312 n n 
C16 H11 N2V sing 313 n n 
C15 H12 N2V sing 314 n n 
C04 H13 N2V sing 315 n n 
C07 H14 N2V sing 316 n n 
C09 H15 N2V sing 317 n n 
C11 H16 N2V sing 318 n n 
C14 H17 N2V sing 319 n n 
C18 H18 N2V sing 320 n n 
C18 H19 N2V sing 321 n n 
C27 H20 N2V sing 322 n n 
C28 H21 N2V sing 323 n n 
C31 H22 N2V sing 324 n n 
C31 H23 N2V sing 325 n n 
C33 H24 N2V sing 326 n n 
C38 H25 N2V sing 327 n n 
C39 H26 N2V sing 328 n n 
C40 H27 N2V sing 329 n n 
C41 H28 N2V sing 330 n n 
C43 H29 N2V sing 331 n n 
C45 H30 N2V sing 332 n n 
C45 H31 N2V sing 333 n n 
C47 H32 N2V sing 334 n n 
C47 H33 N2V sing 335 n n 
C49 H34 N2V sing 336 n n 
C50 H35 N2V sing 337 n n 
C54 H36 N2V sing 338 n n 
C54 H37 N2V sing 339 n n 
C54 H38 N2V sing 340 n n 
C56 H39 N2V sing 341 n n 
C56 H40 N2V sing 342 n n 
C56 H41 N2V sing 343 n n 
C58 H42 N2V sing 344 n n 
C59 H43 N2V sing 345 n n 
C60 H44 N2V sing 346 n n 
C61 H45 N2V sing 347 n n 
N05 H46 N2V sing 348 n n 
O01 H48 N2V sing 349 n n 
#
_atom_sites.entry_id                     6ORV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           N2V 
_pdbx_nonpoly_scheme.pdb_strand_id    RP 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       N2V 
_pdbx_nonpoly_scheme.auth_mon_id      TT1 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C26 N2V . . . F 6 123.316 109.939 77.775 1 76.75 ? C26 N2V 501 RP 1 
HETATM 2 C C25 N2V . . . F 6 124.424 111.016 77.773 1 76.75 ? C25 N2V 501 RP 1 
HETATM 3 C C24 N2V . . . F 6 123.914 112.366 77.325 1 76.75 ? C24 N2V 501 RP 1 
HETATM 4 C C21 N2V . . . F 6 125.821 112.174 79.272 1 76.75 ? C21 N2V 501 RP 1 
HETATM 5 C C20 N2V . . . F 6 126.698 112.102 80.356 1 76.75 ? C20 N2V 501 RP 1 
HETATM 6 C C10 N2V . . . F 6 129.269 114.168 84.717 1 76.75 ? C10 N2V 501 RP 1 
HETATM 7 C C12 N2V . . . F 6 129.049 112.935 86.76 1 76.75 ? C12 N2V 501 RP 1 
HETATM 8 C C13 N2V . . . F 6 128.164 113.89 87.232 1 76.75 ? C13 N2V 501 RP 1 
HETATM 9 C C17 N2V . . . F 6 131.112 116.083 84.692 1 76.75 ? C17 N2V 501 RP 1 
HETATM 10 C C16 N2V . . . F 6 130.775 115.553 83.295 1 76.75 ? C16 N2V 501 RP 1 
HETATM 11 C C15 N2V . . . F 6 128.386 115.123 85.19 1 76.75 ? C15 N2V 501 RP 1 
HETATM 12 C C02 N2V . . . F 6 125.952 118.157 83.23 1 76.75 ? C02 N2V 501 RP 1 
HETATM 13 C C04 N2V . . . F 6 126.432 118.349 81.794 1 76.75 ? C04 N2V 501 RP 1 
HETATM 14 C C06 N2V . . . F 6 128.403 116.792 81.882 1 76.75 ? C06 N2V 501 RP 1 
HETATM 15 C C07 N2V . . . F 6 129.083 115.562 81.369 1 76.75 ? C07 N2V 501 RP 1 
HETATM 16 C C09 N2V . . . F 6 129.876 114.323 83.328 1 76.75 ? C09 N2V 501 RP 1 
HETATM 17 C C11 N2V . . . F 6 129.598 113.075 85.499 1 76.75 ? C11 N2V 501 RP 1 
HETATM 18 C C14 N2V . . . F 6 127.834 114.983 86.451 1 76.75 ? C14 N2V 501 RP 1 
HETATM 19 C C18 N2V . . . F 6 128.573 113.104 81.741 1 76.75 ? C18 N2V 501 RP 1 
HETATM 20 C C19 N2V . . . F 6 127.609 113.157 80.571 1 76.75 ? C19 N2V 501 RP 1 
HETATM 21 C C22 N2V . . . F 6 125.827 113.25 78.405 1 76.75 ? C22 N2V 501 RP 1 
HETATM 22 C C27 N2V . . . F 6 122.051 110.238 78.248 1 76.75 ? C27 N2V 501 RP 1 
HETATM 23 C C28 N2V . . . F 6 121.077 109.255 78.253 1 76.75 ? C28 N2V 501 RP 1 
HETATM 24 C C29 N2V . . . F 6 121.371 107.983 77.796 1 76.75 ? C29 N2V 501 RP 1 
HETATM 25 C C31 N2V . . . F 6 120.62 106.019 78.786 1 76.75 ? C31 N2V 501 RP 1 
HETATM 26 C C32 N2V . . . F 6 120.404 104.64 78.161 1 76.75 ? C32 N2V 501 RP 1 
HETATM 27 C C33 N2V . . . F 6 119.993 103.58 78.952 1 76.75 ? C33 N2V 501 RP 1 
HETATM 28 C C34 N2V . . . F 6 119.799 102.328 78.391 1 76.75 ? C34 N2V 501 RP 1 
HETATM 29 C C36 N2V . . . F 6 120.011 102.139 77.034 1 76.75 ? C36 N2V 501 RP 1 
HETATM 30 C C38 N2V . . . F 6 120.414 103.202 76.244 1 76.75 ? C38 N2V 501 RP 1 
HETATM 31 C C39 N2V . . . F 6 120.613 104.451 76.806 1 76.75 ? C39 N2V 501 RP 1 
HETATM 32 C C40 N2V . . . F 6 122.639 107.679 77.334 1 76.75 ? C40 N2V 501 RP 1 
HETATM 33 C C41 N2V . . . F 6 123.613 108.662 77.328 1 76.75 ? C41 N2V 501 RP 1 
HETATM 34 C C43 N2V . . . F 6 126.736 114.289 78.626 1 76.75 ? C43 N2V 501 RP 1 
HETATM 35 C C44 N2V . . . F 6 127.623 114.211 79.733 1 76.75 ? C44 N2V 501 RP 1 
HETATM 36 C C45 N2V . . . F 6 128.589 115.358 79.922 1 76.75 ? C45 N2V 501 RP 1 
HETATM 37 C C47 N2V . . . F 6 125.238 118.587 80.885 1 76.75 ? C47 N2V 501 RP 1 
HETATM 38 C C48 N2V . . . F 6 124.272 117.413 80.912 1 76.75 ? C48 N2V 501 RP 1 
HETATM 39 C C49 N2V . . . F 6 123.237 117.406 81.827 1 76.75 ? C49 N2V 501 RP 1 
HETATM 40 C C50 N2V . . . F 6 122.355 116.345 81.859 1 76.75 ? C50 N2V 501 RP 1 
HETATM 41 C C51 N2V . . . F 6 122.504 115.298 80.973 1 76.75 ? C51 N2V 501 RP 1 
HETATM 42 C C52 N2V . . . F 6 121.519 114.146 81.023 1 76.75 ? C52 N2V 501 RP 1 
HETATM 43 C C53 N2V . . . F 6 121.969 112.845 81.149 1 76.75 ? C53 N2V 501 RP 1 
HETATM 44 C C54 N2V . . . F 6 123.462 112.54 81.236 1 76.75 ? C54 N2V 501 RP 1 
HETATM 45 C C55 N2V . . . F 6 121.026 111.835 81.19 1 76.75 ? C55 N2V 501 RP 1 
HETATM 46 C C56 N2V . . . F 6 121.486 110.386 81.327 1 76.75 ? C56 N2V 501 RP 1 
HETATM 47 C C58 N2V . . . F 6 119.287 113.329 80.996 1 76.75 ? C58 N2V 501 RP 1 
HETATM 48 C C59 N2V . . . F 6 120.157 114.402 80.947 1 76.75 ? C59 N2V 501 RP 1 
HETATM 49 C C60 N2V . . . F 6 123.539 115.3 80.054 1 76.75 ? C60 N2V 501 RP 1 
HETATM 50 C C61 N2V . . . F 6 124.426 116.362 80.022 1 76.75 ? C61 N2V 501 RP 1 
HETATM 51 N N05 N2V . . . F 6 127.117 117.164 81.327 1 76.75 ? N05 N2V 501 RP 1 
HETATM 52 N N08 N2V . . . F 6 128.796 114.437 82.352 1 76.75 ? N08 N2V 501 RP 1 
HETATM 53 N N57 N2V . . . F 6 119.737 112.095 81.115 1 76.75 ? N57 N2V 501 RP 1 
HETATM 54 O O01 N2V . . . F 6 126.644 117.498 84.05 1 76.75 ? O01 N2V 501 RP 1 
HETATM 55 O O03 N2V . . . F 6 124.863 118.666 83.601 1 76.75 ? O03 N2V 501 RP 1 
HETATM 56 O O23 N2V . . . F 6 124.925 113.309 77.3 1 76.75 ? O23 N2V 501 RP 1 
HETATM 57 O O30 N2V . . . F 6 120.386 106.988 77.806 1 76.75 ? O30 N2V 501 RP 1 
HETATM 58 O O42 N2V . . . F 6 124.913 111.077 79.089 1 76.75 ? O42 N2V 501 RP 1 
HETATM 59 O O46 N2V . . . F 6 128.909 117.448 82.727 1 76.75 ? O46 N2V 501 RP 1 
HETATM 60 CL CL35 N2V . . . F 6 119.276 100.965 79.419 1 76.75 ? CL35 N2V 501 RP 1 
HETATM 61 CL CL37 N2V . . . F 6 119.763 100.532 76.299 1 76.75 ? CL37 N2V 501 RP 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           61 
#