data_6OS2
#
_model_server_result.job_id            cAEOMTqbORpyI7XICoqofw 
_model_server_result.datetime_utc      '2025-03-01 03:20:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6os2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1407}' 
#
_entry.id    6OS2 
#
_exptl.entry_id    6OS2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OS2 
_cell.length_a            59.96 
_cell.length_b            101.35 
_cell.length_c            225.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OS2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 A CYS 18 1_555 A SG CYS 380 A CYS 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 108 A CYS 101 1_555 A SG CYS 187 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf3 B SG CYS 22 D CYS 22 1_555 B SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 183 A ASN 176 1_555 D C1 NAG . A NAG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 C C SAR 1 B SAR 1 1_555 C N ARG 2 B ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 C C PRO 7 B PRO 7 1_555 C N NH2 8 B NH2 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 346 n n 
C10 C9 OLC doub 347 n n 
C10 C11 OLC sing 348 n n 
C9 C8 OLC sing 349 n n 
C17 C16 OLC sing 350 z n 
C11 C12 OLC sing 351 n n 
C8 C7 OLC sing 352 n n 
C24 C22 OLC sing 353 n n 
C24 O25 OLC sing 354 n n 
C16 C15 OLC sing 355 n n 
C12 C13 OLC sing 356 n n 
C7 C6 OLC sing 357 n n 
C15 C14 OLC sing 358 n n 
C13 C14 OLC sing 359 n n 
C6 C5 OLC sing 360 n n 
C5 C4 OLC sing 361 n n 
C4 C3 OLC sing 362 n n 
C3 C2 OLC sing 363 n n 
C2 C1 OLC sing 364 n n 
C21 C22 OLC sing 365 n n 
C21 O20 OLC sing 366 n n 
C1 O19 OLC doub 367 n n 
C1 O20 OLC sing 368 n n 
C22 O23 OLC sing 369 n n 
C18 H18 OLC sing 370 n n 
C18 H18A OLC sing 371 n n 
C18 H18B OLC sing 372 n n 
C10 H10 OLC sing 373 n n 
C9 H9 OLC sing 374 n n 
C17 H17 OLC sing 375 n n 
C17 H17A OLC sing 376 n n 
C11 H11 OLC sing 377 n n 
C11 H11A OLC sing 378 n n 
C8 H8 OLC sing 379 n n 
C8 H8A OLC sing 380 n n 
C24 H24 OLC sing 381 n n 
C24 H24A OLC sing 382 n n 
C16 H16 OLC sing 383 n n 
C16 H16A OLC sing 384 n n 
C12 H12 OLC sing 385 n n 
C12 H12A OLC sing 386 n n 
C7 H7 OLC sing 387 n n 
C7 H7A OLC sing 388 n n 
C15 H15 OLC sing 389 n n 
C15 H15A OLC sing 390 n n 
C13 H13 OLC sing 391 n n 
C13 H13A OLC sing 392 n n 
C6 H6 OLC sing 393 n n 
C6 H6A OLC sing 394 n n 
C14 H14 OLC sing 395 n n 
C14 H14A OLC sing 396 n n 
C5 H5 OLC sing 397 n n 
C5 H5A OLC sing 398 n n 
C4 H4 OLC sing 399 n n 
C4 H4A OLC sing 400 n n 
C3 H3 OLC sing 401 n n 
C3 H3A OLC sing 402 n n 
C2 H2 OLC sing 403 n n 
C2 H2A OLC sing 404 n n 
C21 H21 OLC sing 405 n n 
C21 H21A OLC sing 406 n n 
C22 H22 OLC sing 407 n n 
O25 HO25 OLC sing 408 n n 
O23 HO23 OLC sing 409 n n 
#
_atom_sites.entry_id                     6OS2 
_atom_sites.fract_transf_matrix[1][1]    0.016678 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009867 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004427 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 1401 1 NAG NAG . 
E 5 OLC A 1 1402 1 OLC OLC . 
F 5 OLC A 1 1403 2 OLC OLC . 
G 5 OLC A 1 1404 3 OLC OLC . 
H 5 OLC A 1 1405 4 OLC OLC . 
I 5 OLC A 1 1406 5 OLC OLC . 
J 5 OLC A 1 1407 6 OLC OLC . 
K 6 CLR A 1 1408 1 CLR CLR . 
L 7 HOH A 1 1501 11 HOH HOH . 
L 7 HOH A 2 1502 23 HOH HOH . 
L 7 HOH A 3 1503 20 HOH HOH . 
L 7 HOH A 4 1504 16 HOH HOH . 
L 7 HOH A 5 1505 15 HOH HOH . 
L 7 HOH A 6 1506 7 HOH HOH . 
L 7 HOH A 7 1507 2 HOH HOH . 
L 7 HOH A 8 1508 12 HOH HOH . 
L 7 HOH A 9 1509 3 HOH HOH . 
L 7 HOH A 10 1510 14 HOH HOH . 
L 7 HOH A 11 1511 10 HOH HOH . 
L 7 HOH A 12 1512 13 HOH HOH . 
L 7 HOH A 13 1513 1 HOH HOH . 
L 7 HOH A 14 1514 24 HOH HOH . 
L 7 HOH A 15 1515 21 HOH HOH . 
M 7 HOH D 1 201 25 HOH HOH . 
M 7 HOH D 2 202 9 HOH HOH . 
M 7 HOH D 3 203 4 HOH HOH . 
M 7 HOH D 4 204 26 HOH HOH . 
M 7 HOH D 5 205 18 HOH HOH . 
N 7 HOH B 1 101 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . J 5 -4.471 -17.363 -48.67 1 92.58 ? C10 OLC 1407 A 1 
HETATM 2 C C9 OLC . . . J 5 -5.113 -16.895 -47.621 1 84.55 ? C9 OLC 1407 A 1 
HETATM 3 C C11 OLC . . . J 5 -4.478 -18.862 -48.959 1 92.98 ? C11 OLC 1407 A 1 
HETATM 4 C C8 OLC . . . J 5 -5.11 -15.397 -47.327 1 79.4 ? C8 OLC 1407 A 1 
HETATM 5 C C12 OLC . . . J 5 -3.595 -19.149 -50.171 1 90.9 ? C12 OLC 1407 A 1 
HETATM 6 C C7 OLC . . . J 5 -3.671 -14.887 -47.32 1 74.96 ? C7 OLC 1407 A 1 
HETATM 7 C C6 OLC . . . J 5 -3.673 -13.377 -47.098 1 72.41 ? C6 OLC 1407 A 1 
HETATM 8 C C5 OLC . . . J 5 -3.483 -13.081 -45.612 1 67.37 ? C5 OLC 1407 A 1 
HETATM 9 C C4 OLC . . . J 5 -3.665 -11.585 -45.367 1 74.73 ? C4 OLC 1407 A 1 
HETATM 10 C C3 OLC . . . J 5 -2.869 -11.168 -44.132 1 79.77 ? C3 OLC 1407 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#