data_6OS4 # _model_server_result.job_id fcAsT7TstUS7G0Os11RbTA _model_server_result.datetime_utc '2025-02-05 12:54:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6os4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6OS4 # _exptl.entry_id 6OS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.536 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 's-farnesyl-l-cysteine methyl ester' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OS4 _cell.length_a 40.379 _cell.length_b 40.379 _cell.length_c 338.137 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OS4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 20.1895 34.96924 281.780833 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc3 A OD1 ASP 24 A ASP 24 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 A O THR 26 A THR 26 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 A OE1 GLU 31 A GLU 31 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc6 A OE2 GLU 31 A GLU 31 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc7 A OD1 ASP 56 A ASP 56 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc8 A OD1 ASP 58 A ASP 58 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc9 A OD1 ASN 60 A ASN 60 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 A O THR 62 A THR 62 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc11 A OE1 GLU 67 A GLU 67 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc12 A OE2 GLU 67 A GLU 67 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc13 A OD1 ASP 93 A ASP 93 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc14 A OD1 ASP 95 A ASP 95 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc15 A OD1 ASN 97 A ASN 97 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc16 A O TYR 99 A TYR 99 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc17 A OE1 GLU 104 A GLU 104 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc18 A OE2 GLU 104 A GLU 104 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc19 A OD1 ASP 129 A ASP 129 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc20 A OD2 ASP 131 A ASP 131 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc21 A OD1 ASP 133 A ASP 133 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc22 A O GLN 135 A GLN 135 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc23 A OE1 GLU 140 A GLU 140 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc24 A OE2 GLU 140 A GLU 140 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc25 B CA CA . A CA 201 1_555 G O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc26 C CA CA . A CA 202 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc27 D CA CA . A CA 203 1_555 G O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc28 E CA CA . A CA 204 1_555 G O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? # _chem_comp.formula 'C19 H33 N O2 S' _chem_comp.formula_weight 339.536 _chem_comp.id 5U0 _chem_comp.mon_nstd_flag . _chem_comp.name 's-farnesyl-l-cysteine methyl ester' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD CAA 5U0 sing 1 n n CAB CAA 5U0 sing 2 n n CAA CAC 5U0 doub 3 n n CAC CAE 5U0 sing 4 n n CAE CAF 5U0 sing 5 n n CAF CAG 5U0 sing 6 n n CAH CAG 5U0 doub 7 e n CAH CAJ 5U0 sing 8 n n CAG CAI 5U0 sing 9 n n CAJ CAK 5U0 sing 10 n n CAK CAL 5U0 sing 11 n n CAL CAM 5U0 doub 12 e n CAL CAN 5U0 sing 13 n n CAM CAO 5U0 sing 14 n n CB SAP 5U0 sing 15 n n CB CA 5U0 sing 16 n n SAP CAO 5U0 sing 17 n n N CA 5U0 sing 18 n n CA C 5U0 sing 19 n n O C 5U0 doub 20 n n C OAV 5U0 sing 21 n n OAV CAW 5U0 sing 22 n n CAB H1 5U0 sing 23 n n CAB H2 5U0 sing 24 n n CAB H3 5U0 sing 25 n n CAD H4 5U0 sing 26 n n CAD H5 5U0 sing 27 n n CAD H6 5U0 sing 28 n n CAC H7 5U0 sing 29 n n CAE H8 5U0 sing 30 n n CAE H9 5U0 sing 31 n n CAF H10 5U0 sing 32 n n CAF H11 5U0 sing 33 n n CAI H12 5U0 sing 34 n n CAI H13 5U0 sing 35 n n CAI H14 5U0 sing 36 n n CAH H15 5U0 sing 37 n n CAJ H16 5U0 sing 38 n n CAJ H17 5U0 sing 39 n n CAK H18 5U0 sing 40 n n CAK H19 5U0 sing 41 n n CAN H20 5U0 sing 42 n n CAN H21 5U0 sing 43 n n CAN H22 5U0 sing 44 n n CAM H23 5U0 sing 45 n n CAO H24 5U0 sing 46 n n CAO H25 5U0 sing 47 n n CB H26 5U0 sing 48 n n CB H27 5U0 sing 49 n n CA H28 5U0 sing 50 n n N H29 5U0 sing 51 n n N H30 5U0 sing 52 n n CAW H32 5U0 sing 53 n n CAW H33 5U0 sing 54 n n CAW H34 5U0 sing 55 n n # _atom_sites.entry_id 6OS4 _atom_sites.fract_transf_matrix[1][1] 0.024765 _atom_sites.fract_transf_matrix[1][2] 0.014298 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 201 1 CA CA . C 2 CA A 1 202 2 CA CA . D 2 CA A 1 203 3 CA CA . E 2 CA A 1 204 4 CA CA . F 3 5U0 A 1 205 1 5U0 FAR . G 4 HOH A 1 301 60 HOH HOH . G 4 HOH A 2 302 61 HOH HOH . G 4 HOH A 3 303 33 HOH HOH . G 4 HOH A 4 304 66 HOH HOH . G 4 HOH A 5 305 51 HOH HOH . G 4 HOH A 6 306 53 HOH HOH . G 4 HOH A 7 307 14 HOH HOH . G 4 HOH A 8 308 3 HOH HOH . G 4 HOH A 9 309 78 HOH HOH . G 4 HOH A 10 310 54 HOH HOH . G 4 HOH A 11 311 10 HOH HOH . G 4 HOH A 12 312 55 HOH HOH . G 4 HOH A 13 313 29 HOH HOH . G 4 HOH A 14 314 67 HOH HOH . G 4 HOH A 15 315 48 HOH HOH . G 4 HOH A 16 316 6 HOH HOH . G 4 HOH A 17 317 20 HOH HOH . G 4 HOH A 18 318 1 HOH HOH . G 4 HOH A 19 319 26 HOH HOH . G 4 HOH A 20 320 30 HOH HOH . G 4 HOH A 21 321 5 HOH HOH . G 4 HOH A 22 322 4 HOH HOH . G 4 HOH A 23 323 50 HOH HOH . G 4 HOH A 24 324 83 HOH HOH . G 4 HOH A 25 325 19 HOH HOH . G 4 HOH A 26 326 2 HOH HOH . G 4 HOH A 27 327 17 HOH HOH . G 4 HOH A 28 328 9 HOH HOH . G 4 HOH A 29 329 11 HOH HOH . G 4 HOH A 30 330 38 HOH HOH . G 4 HOH A 31 331 39 HOH HOH . G 4 HOH A 32 332 36 HOH HOH . G 4 HOH A 33 333 34 HOH HOH . G 4 HOH A 34 334 46 HOH HOH . G 4 HOH A 35 335 92 HOH HOH . G 4 HOH A 36 336 21 HOH HOH . G 4 HOH A 37 337 23 HOH HOH . G 4 HOH A 38 338 24 HOH HOH . G 4 HOH A 39 339 32 HOH HOH . G 4 HOH A 40 340 31 HOH HOH . G 4 HOH A 41 341 18 HOH HOH . G 4 HOH A 42 342 40 HOH HOH . G 4 HOH A 43 343 43 HOH HOH . G 4 HOH A 44 344 13 HOH HOH . G 4 HOH A 45 345 7 HOH HOH . G 4 HOH A 46 346 12 HOH HOH . G 4 HOH A 47 347 42 HOH HOH . G 4 HOH A 48 348 93 HOH HOH . G 4 HOH A 49 349 76 HOH HOH . G 4 HOH A 50 350 27 HOH HOH . G 4 HOH A 51 351 52 HOH HOH . G 4 HOH A 52 352 58 HOH HOH . G 4 HOH A 53 353 22 HOH HOH . G 4 HOH A 54 354 74 HOH HOH . G 4 HOH A 55 355 15 HOH HOH . G 4 HOH A 56 356 16 HOH HOH . G 4 HOH A 57 357 8 HOH HOH . G 4 HOH A 58 358 44 HOH HOH . G 4 HOH A 59 359 45 HOH HOH . G 4 HOH A 60 360 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB 5U0 . . . F 3 8.075 25.049 160.855 1 49.36 ? CAB 5U0 205 A 1 HETATM 2 C CAA 5U0 . . . F 3 8.739 25.611 159.635 1 46.52 ? CAA 5U0 205 A 1 HETATM 3 C CAD 5U0 . . . F 3 8.4 27.042 159.348 1 37.82 ? CAD 5U0 205 A 1 HETATM 4 C CAC 5U0 . . . F 3 9.575 24.921 158.878 1 52.65 ? CAC 5U0 205 A 1 HETATM 5 C CAE 5U0 . . . F 3 10.056 23.511 159.039 1 61.04 ? CAE 5U0 205 A 1 HETATM 6 C CAF 5U0 . . . F 3 9.932 22.736 157.716 1 64.16 ? CAF 5U0 205 A 1 HETATM 7 C CAG 5U0 . . . F 3 11.107 21.832 157.434 1 70.77 ? CAG 5U0 205 A 1 HETATM 8 C CAI 5U0 . . . F 3 11.275 20.682 158.386 1 66.89 ? CAI 5U0 205 A 1 HETATM 9 C CAH 5U0 . . . F 3 11.91 22.059 156.401 1 77.51 ? CAH 5U0 205 A 1 HETATM 10 C CAJ 5U0 . . . F 3 13.098 21.254 155.962 1 82.23 ? CAJ 5U0 205 A 1 HETATM 11 C CAK 5U0 . . . F 3 13.199 21.183 154.427 1 85.3 ? CAK 5U0 205 A 1 HETATM 12 C CAL 5U0 . . . F 3 13.741 22.445 153.801 1 89.78 ? CAL 5U0 205 A 1 HETATM 13 C CAN 5U0 . . . F 3 12.789 23.17 152.891 1 88.28 ? CAN 5U0 205 A 1 HETATM 14 C CAM 5U0 . . . F 3 14.986 22.842 154.039 1 94.99 ? CAM 5U0 205 A 1 HETATM 15 C CAO 5U0 . . . F 3 15.585 24.035 153.414 1 102.72 ? CAO 5U0 205 A 1 HETATM 16 S SAP 5U0 . . . F 3 14.928 25.597 154.058 1 109.38 ? SAP 5U0 205 A 1 HETATM 17 C CB 5U0 . . . F 3 16.367 26.695 153.971 1 109.52 ? CB 5U0 205 A 1 HETATM 18 C CA 5U0 . . . F 3 16.274 27.799 152.922 1 113.31 ? CA 5U0 205 A 1 HETATM 19 N N 5U0 . . . F 3 16.66 29.113 153.508 1 113.22 ? N 5U0 205 A 1 HETATM 20 C C 5U0 . . . F 3 14.894 27.943 152.306 1 117.28 ? C 5U0 205 A 1 HETATM 21 O O 5U0 . . . F 3 13.904 28.234 152.92 1 117.14 ? O 5U0 205 A 1 HETATM 22 O OAV 5U0 . . . F 3 14.934 27.732 150.994 1 118.91 ? OAV 5U0 205 A 1 HETATM 23 C CAW 5U0 . . . F 3 13.694 27.946 150.28 1 117.98 ? CAW 5U0 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #