data_6OT8 # _model_server_result.job_id UydjCOg3hujCViTB9sVNfg _model_server_result.datetime_utc '2024-11-15 21:32:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ot8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6OT8 # _exptl.entry_id 6OT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OT8 _cell.length_a 87 _cell.length_b 87 _cell.length_c 63.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall 'P 6c 2c' _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 43.5 75.34421 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -43.5 75.34421 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 43.5 75.34421 31.65 5 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 31.65 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -43.5 75.34421 31.65 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 82 A CYS 82 1_555 G C1 HAE . A HAE 206 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.827 ? covale ? covale2 A SG CYS 82 A CYS 82 1_555 G C1 HAE . A HAE 206 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.815 ? covale ? covale3 A SG CYS 98 A CYS 98 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? covale ? covale4 A SG CYS 101 A CYS 101 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc1 A OE2 GLU 2 A GLU 2 1_555 E ZN ZN . A ZN 204 12_565 ? C ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 A OE1 GLU 5 A GLU 5 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc3 A OE1 GLU 5 A GLU 5 1_555 C ZN ZN . A ZN 202 12_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc4 A SD MET 7 A MET 7 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 A ND1 HIS 8 A HIS 8 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc6 A ND1 HIS 8 A HIS 8 1_555 C ZN ZN . A ZN 202 12_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc7 A NE2 HIS 16 A HIS 16 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc8 A OD1 ASP 21 A ASP 21 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc9 A OE1 GLU 25 A GLU 25 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc10 A NE2 HIS 77 A HIS 77 1_555 D ZN ZN . A ZN 203 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc11 A NE2 HIS 102 A HIS 102 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc12 D ZN ZN . A ZN 203 1_555 H O HOH . A HOH 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc13 F FE FE . A FE 205 1_555 G O2 HAE . A HAE 206 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.044 ? metalc ? metalc14 F FE FE . A FE 205 1_555 G N HAE . A HAE 206 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.703 ? metalc ? metalc15 F FE FE . A FE 205 1_555 G O HAE . A HAE 206 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.988 ? metalc ? metalc16 F FE FE . A FE 205 1_555 G O HAE . A HAE 206 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.932 ? metalc ? metalc17 F FE FE . A FE 205 1_555 G O2 HAE . A HAE 206 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.006 ? metalc ? metalc18 F FE FE . A FE 205 1_555 G O2 HAE . A HAE 206 2_665 ? A ? ? A ? ? ? ? ? ? ? 2.049 ? metalc ? metalc19 F FE FE . A FE 205 1_555 G O HAE . A HAE 206 3_565 ? A ? ? A ? ? ? ? ? ? ? 1.993 ? metalc ? metalc20 F FE FE . A FE 205 1_555 G O HAE . A HAE 206 3_565 ? B ? ? B ? ? ? ? ? ? ? 1.939 ? metalc ? metalc21 F FE FE . A FE 205 1_555 G O2 HAE . A HAE 206 3_565 ? B ? ? B ? ? ? ? ? ? ? 2.01 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OT8 _atom_sites.fract_transf_matrix[1][1] 0.011494 _atom_sites.fract_transf_matrix[1][2] 0.006636 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 150 HEC HEM . C 3 ZN A 1 202 155 ZN ZN . D 3 ZN A 1 203 156 ZN ZN . E 3 ZN A 1 204 154 ZN ZN . F 4 FE A 1 205 153 FE FE . G 5 HAE A 1 206 152 HAE HAE . H 6 HOH A 1 301 43 HOH HOH . H 6 HOH A 2 302 77 HOH HOH . H 6 HOH A 3 303 72 HOH HOH . H 6 HOH A 4 304 96 HOH HOH . H 6 HOH A 5 305 24 HOH HOH . H 6 HOH A 6 306 41 HOH HOH . H 6 HOH A 7 307 102 HOH HOH . H 6 HOH A 8 308 73 HOH HOH . H 6 HOH A 9 309 88 HOH HOH . H 6 HOH A 10 310 22 HOH HOH . H 6 HOH A 11 311 121 HOH HOH . H 6 HOH A 12 312 124 HOH HOH . H 6 HOH A 13 313 103 HOH HOH . H 6 HOH A 14 314 74 HOH HOH . H 6 HOH A 15 315 18 HOH HOH . H 6 HOH A 16 316 39 HOH HOH . H 6 HOH A 17 317 12 HOH HOH . H 6 HOH A 18 318 126 HOH HOH . H 6 HOH A 19 319 21 HOH HOH . H 6 HOH A 20 320 6 HOH HOH . H 6 HOH A 21 321 122 HOH HOH . H 6 HOH A 22 322 9 HOH HOH . H 6 HOH A 23 323 7 HOH HOH . H 6 HOH A 24 324 16 HOH HOH . H 6 HOH A 25 325 49 HOH HOH . H 6 HOH A 26 326 8 HOH HOH . H 6 HOH A 27 327 50 HOH HOH . H 6 HOH A 28 328 87 HOH HOH . H 6 HOH A 29 329 40 HOH HOH . H 6 HOH A 30 330 84 HOH HOH . H 6 HOH A 31 331 44 HOH HOH . H 6 HOH A 32 332 80 HOH HOH . H 6 HOH A 33 333 54 HOH HOH . H 6 HOH A 34 334 14 HOH HOH . H 6 HOH A 35 335 65 HOH HOH . H 6 HOH A 36 336 38 HOH HOH . H 6 HOH A 37 337 66 HOH HOH . H 6 HOH A 38 338 62 HOH HOH . H 6 HOH A 39 339 3 HOH HOH . H 6 HOH A 40 340 119 HOH HOH . H 6 HOH A 41 341 52 HOH HOH . H 6 HOH A 42 342 11 HOH HOH . H 6 HOH A 43 343 100 HOH HOH . H 6 HOH A 44 344 57 HOH HOH . H 6 HOH A 45 345 111 HOH HOH . H 6 HOH A 46 346 115 HOH HOH . H 6 HOH A 47 347 46 HOH HOH . H 6 HOH A 48 348 110 HOH HOH . H 6 HOH A 49 349 15 HOH HOH . H 6 HOH A 50 350 78 HOH HOH . H 6 HOH A 51 351 68 HOH HOH . H 6 HOH A 52 352 82 HOH HOH . H 6 HOH A 53 353 69 HOH HOH . H 6 HOH A 54 354 19 HOH HOH . H 6 HOH A 55 355 2 HOH HOH . H 6 HOH A 56 356 13 HOH HOH . H 6 HOH A 57 357 53 HOH HOH . H 6 HOH A 58 358 92 HOH HOH . H 6 HOH A 59 359 17 HOH HOH . H 6 HOH A 60 360 70 HOH HOH . H 6 HOH A 61 361 42 HOH HOH . H 6 HOH A 62 362 63 HOH HOH . H 6 HOH A 63 363 105 HOH HOH . H 6 HOH A 64 364 26 HOH HOH . H 6 HOH A 65 365 35 HOH HOH . H 6 HOH A 66 366 33 HOH HOH . H 6 HOH A 67 367 1 HOH HOH . H 6 HOH A 68 368 37 HOH HOH . H 6 HOH A 69 369 10 HOH HOH . H 6 HOH A 70 370 125 HOH HOH . H 6 HOH A 71 371 45 HOH HOH . H 6 HOH A 72 372 113 HOH HOH . H 6 HOH A 73 373 97 HOH HOH . H 6 HOH A 74 374 91 HOH HOH . H 6 HOH A 75 375 67 HOH HOH . H 6 HOH A 76 376 89 HOH HOH . H 6 HOH A 77 377 64 HOH HOH . H 6 HOH A 78 378 108 HOH HOH . H 6 HOH A 79 379 5 HOH HOH . H 6 HOH A 80 380 4 HOH HOH . H 6 HOH A 81 381 36 HOH HOH . H 6 HOH A 82 382 60 HOH HOH . H 6 HOH A 83 383 106 HOH HOH . H 6 HOH A 84 384 32 HOH HOH . H 6 HOH A 85 385 120 HOH HOH . H 6 HOH A 86 386 95 HOH HOH . H 6 HOH A 87 387 104 HOH HOH . H 6 HOH A 88 388 25 HOH HOH . H 6 HOH A 89 389 27 HOH HOH . H 6 HOH A 90 390 79 HOH HOH . H 6 HOH A 91 391 75 HOH HOH . H 6 HOH A 92 392 99 HOH HOH . H 6 HOH A 93 393 55 HOH HOH . H 6 HOH A 94 394 31 HOH HOH . H 6 HOH A 95 395 29 HOH HOH . H 6 HOH A 96 396 20 HOH HOH . H 6 HOH A 97 397 118 HOH HOH . H 6 HOH A 98 398 112 HOH HOH . H 6 HOH A 99 399 94 HOH HOH . H 6 HOH A 100 400 71 HOH HOH . H 6 HOH A 101 401 107 HOH HOH . H 6 HOH A 102 402 59 HOH HOH . H 6 HOH A 103 403 86 HOH HOH . H 6 HOH A 104 404 98 HOH HOH . H 6 HOH A 105 405 123 HOH HOH . H 6 HOH A 106 406 28 HOH HOH . H 6 HOH A 107 407 90 HOH HOH . H 6 HOH A 108 408 93 HOH HOH . H 6 HOH A 109 409 81 HOH HOH . H 6 HOH A 110 410 30 HOH HOH . H 6 HOH A 111 411 83 HOH HOH . H 6 HOH A 112 412 34 HOH HOH . H 6 HOH A 113 413 127 HOH HOH . H 6 HOH A 114 414 48 HOH HOH . H 6 HOH A 115 415 51 HOH HOH . H 6 HOH A 116 416 47 HOH HOH . H 6 HOH A 117 417 61 HOH HOH . H 6 HOH A 118 418 58 HOH HOH . H 6 HOH A 119 419 101 HOH HOH . H 6 HOH A 120 420 56 HOH HOH . H 6 HOH A 121 421 23 HOH HOH . H 6 HOH A 122 422 109 HOH HOH . H 6 HOH A 123 423 76 HOH HOH . H 6 HOH A 124 424 85 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -16.42 _atom_site.Cartn_y 44.52 _atom_site.Cartn_z 6.8 _atom_site.occupancy 0.55 _atom_site.B_iso_or_equiv 78.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 1 #