data_6OT9 # _model_server_result.job_id BDkKAl5fK5EmbJyVRZgllQ _model_server_result.datetime_utc '2024-11-23 21:26:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ot9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":201}' # _entry.id 6OT9 # _exptl.entry_id 6OT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OT9 _cell.length_a 125.64 _cell.length_b 125.64 _cell.length_c 166.35 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 I N N ? 2 K N N ? 2 N N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 63 C CYS 63 1_555 G C1 HAE . C HAE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale2 A SG CYS 98 C CYS 98 1_555 H CAB HEC . C HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? covale ? covale3 A SG CYS 101 C CYS 101 1_555 H CAC HEC . C HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? covale ? covale4 B SG CYS 63 D CYS 63 1_555 L C1 HAE . D HAE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? covale ? covale5 B SG CYS 98 D CYS 98 1_555 M CAB HEC . D HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? covale ? covale6 B SG CYS 101 D CYS 101 1_555 M CAC HEC . D HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? covale ? covale7 C SG CYS 63 B CYS 63 1_555 P C1 HAE . B HAE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale8 C SG CYS 98 B CYS 98 1_555 Q CAB HEC . B HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? covale ? covale9 C SG CYS 101 B CYS 101 1_555 Q CAC HEC . B HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? covale ? covale10 D SG CYS 63 A CYS 63 1_555 S C1 HAE . A HAE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.699 ? covale ? covale11 D SG CYS 98 A CYS 98 1_555 T CAB HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? covale ? covale12 D SG CYS 101 A CYS 101 1_555 T CAC HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc1 A N ALA 1 C ALA 1 1_555 E ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 A O ALA 1 C ALA 1 1_555 E ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc3 A NE2 HIS 8 C HIS 8 1_555 F ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc4 A OD2 ASP 12 C ASP 12 1_555 F ZN ZN . C ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc5 A OD2 ASP 39 C ASP 39 1_555 E ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 A NE2 HIS 77 C HIS 77 1_555 I ZN ZN . C ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc7 A NE2 HIS 102 C HIS 102 1_555 H FE HEC . C HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc8 E ZN ZN . C ZN 201 1_555 B NE2 HIS 77 D HIS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc9 F ZN ZN . C ZN 202 2_555 B NE2 HIS 8 D HIS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc10 F ZN ZN . C ZN 202 2_555 B OD2 ASP 12 D ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc11 G O2 HAE . C HAE 203 1_555 J FE FE . C FE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc12 G N HAE . C HAE 203 1_555 J FE FE . C FE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc13 G O HAE . C HAE 203 1_555 J FE FE . C FE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc14 I ZN ZN . C ZN 205 1_555 D N ALA 1 A ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc15 I ZN ZN . C ZN 205 1_555 D O ALA 1 A ALA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc16 I ZN ZN . C ZN 205 1_555 D OD2 ASP 39 A ASP 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? metalc ? metalc17 J FE FE . C FE 206 1_555 L O HAE . D HAE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc18 J FE FE . C FE 206 1_555 L O2 HAE . D HAE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc19 J FE FE . C FE 206 1_555 S N HAE . A HAE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc20 J FE FE . C FE 206 1_555 S O2 HAE . A HAE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc21 J FE FE . C FE 206 1_555 S O HAE . A HAE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc22 B N ALA 1 D ALA 1 1_555 K ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc23 B O ALA 1 D ALA 1 1_555 K ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc24 B SD MET 7 D MET 7 1_555 M FE HEC . D HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc25 B OD2 ASP 39 D ASP 39 1_555 K ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc26 B NE2 HIS 102 D HIS 102 1_555 M FE HEC . D HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc27 K ZN ZN . D ZN 201 1_555 D NE2 HIS 77 A HIS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc28 C N ALA 1 B ALA 1 1_555 N ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc29 C O ALA 1 B ALA 1 1_555 N ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc30 C SD MET 7 B MET 7 1_555 Q FE HEC . B HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc31 C NE2 HIS 8 B HIS 8 1_555 R ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc32 C OD2 ASP 12 B ASP 12 1_555 R ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc33 C OD2 ASP 39 B ASP 39 1_555 N ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc34 C NE2 HIS 77 B HIS 77 1_555 N ZN ZN . B ZN 201 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc35 C NE2 HIS 102 B HIS 102 1_555 Q FE HEC . B HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc36 N ZN ZN . B ZN 201 1_555 W O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc37 O FE FE . B FE 202 1_555 P O HAE . B HAE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc38 O FE FE . B FE 202 1_555 P O2 HAE . B HAE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc39 O FE FE . B FE 202 1_555 P O HAE . B HAE 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc40 O FE FE . B FE 202 1_555 P O2 HAE . B HAE 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc41 R ZN ZN . B ZN 205 1_555 D NE2 HIS 8 A HIS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc42 R ZN ZN . B ZN 205 1_555 D OD2 ASP 12 A ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc43 D SD MET 7 A MET 7 1_555 T FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc44 D NE2 HIS 102 A HIS 102 1_555 T FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OT9 _atom_sites.fract_transf_matrix[1][1] 0.007959 _atom_sites.fract_transf_matrix[1][2] 0.004595 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN C 1 201 154 ZN ZN . F 2 ZN C 1 202 155 ZN ZN . G 3 HAE C 1 203 151 HAE HAE . H 4 HEC C 1 204 150 HEC HEM . I 2 ZN C 1 205 154 ZN ZN . J 5 FE C 1 206 153 FE FE . K 2 ZN D 1 201 154 ZN ZN . L 3 HAE D 1 202 151 HAE HAE . M 4 HEC D 1 203 150 HEC HEM . N 2 ZN B 1 201 154 ZN ZN . O 5 FE B 1 202 153 FE FE . P 3 HAE B 1 203 151 HAE HAE . Q 4 HEC B 1 204 150 HEC HEM . R 2 ZN B 1 205 155 ZN ZN . S 3 HAE A 1 201 151 HAE HAE . T 4 HEC A 1 202 150 HEC HEM . U 6 HOH C 1 301 12 HOH HOH . U 6 HOH C 2 302 18 HOH HOH . U 6 HOH C 3 303 3 HOH HOH . U 6 HOH C 4 304 5 HOH HOH . U 6 HOH C 5 305 19 HOH HOH . U 6 HOH C 6 306 20 HOH HOH . V 6 HOH D 1 301 1 HOH HOH . V 6 HOH D 2 302 13 HOH HOH . W 6 HOH B 1 301 7 HOH HOH . W 6 HOH B 2 302 2 HOH HOH . W 6 HOH B 3 303 6 HOH HOH . W 6 HOH B 4 304 14 HOH HOH . X 6 HOH A 1 301 17 HOH HOH . X 6 HOH A 2 302 8 HOH HOH . X 6 HOH A 3 303 9 HOH HOH . X 6 HOH A 4 304 16 HOH HOH . X 6 HOH A 5 305 10 HOH HOH . X 6 HOH A 6 306 4 HOH HOH . X 6 HOH A 7 307 11 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 2 _atom_site.Cartn_x -24.232 _atom_site.Cartn_y -3.022 _atom_site.Cartn_z -34.241 _atom_site.occupancy 0.88 _atom_site.B_iso_or_equiv 69.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #