data_6OTE # _model_server_result.job_id MTJVnKPooXoUydOPAPlMJw _model_server_result.datetime_utc '2025-02-16 22:53:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ote # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6OTE # _exptl.entry_id 6OTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.397 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OTE _cell.length_a 92.21 _cell.length_b 92.21 _cell.length_c 257.18 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 486 A GLU 368 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc2 A OG SER 489 A SER 371 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc3 B O2S SSA . A SSA 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc4 C MG MG . A MG 502 1_555 D O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? # _chem_comp.formula 'C13 H19 N7 O8 S' _chem_comp.formula_weight 433.397 _chem_comp.id SSA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 CA SSA sing 290 n n N10 HN11 SSA sing 291 n n N10 HN12 SSA sing 292 n n CA CB SSA sing 293 n n CA C9 SSA sing 294 n n CA HA SSA sing 295 n n CB OG SSA sing 296 n n CB HB1 SSA sing 297 n n CB HB2 SSA sing 298 n n OG HOG SSA sing 299 n n C9 O9 SSA doub 300 n n C9 N8 SSA sing 301 n n N8 S1 SSA sing 302 n n N8 HN8 SSA sing 303 n n S1 O1S SSA doub 304 n n S1 O2S SSA doub 305 n n S1 O5' SSA sing 306 n n O5' C5' SSA sing 307 n n C5' C4' SSA sing 308 n n C5' "H5'1" SSA sing 309 n n C5' "H5'2" SSA sing 310 n n C4' O4' SSA sing 311 n n C4' C3' SSA sing 312 n n C4' H4' SSA sing 313 n n O4' C1' SSA sing 314 n n C3' O3' SSA sing 315 n n C3' C2' SSA sing 316 n n C3' H3' SSA sing 317 n n O3' HO3' SSA sing 318 n n C2' O2' SSA sing 319 n n C2' C1' SSA sing 320 n n C2' H2' SSA sing 321 n n O2' HO2' SSA sing 322 n n C1' N9 SSA sing 323 n n C1' H1' SSA sing 324 n n N9 C8 SSA sing 325 n y N9 C4 SSA sing 326 n y C8 N7 SSA doub 327 n y C8 H8 SSA sing 328 n n N7 C5 SSA sing 329 n y C5 C6 SSA sing 330 n y C5 C4 SSA doub 331 n y C6 N6 SSA sing 332 n n C6 N1 SSA doub 333 n y N6 HN61 SSA sing 334 n n N6 HN62 SSA sing 335 n n N1 C2 SSA sing 336 n y C2 N3 SSA doub 337 n y C2 H2 SSA sing 338 n n N3 C4 SSA sing 339 n y # _atom_sites.entry_id 6OTE _atom_sites.fract_transf_matrix[1][1] 0.010845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SSA A 1 501 500 SSA SSA . C 3 MG A 1 502 1 MG MG . D 4 HOH A 1 601 4 HOH HOH . D 4 HOH A 2 602 25 HOH HOH . D 4 HOH A 3 603 7 HOH HOH . D 4 HOH A 4 604 3 HOH HOH . D 4 HOH A 5 605 11 HOH HOH . D 4 HOH A 6 606 13 HOH HOH . D 4 HOH A 7 607 22 HOH HOH . D 4 HOH A 8 608 17 HOH HOH . D 4 HOH A 9 609 10 HOH HOH . D 4 HOH A 10 610 2 HOH HOH . D 4 HOH A 11 611 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N10 SSA . . . B 2 15.97 2.092 25.974 1 33.7 ? N10 SSA 501 A 1 HETATM 2 C CA SSA . . . B 2 16.673 3.361 25.72 1 33.61 ? CA SSA 501 A 1 HETATM 3 C CB SSA . . . B 2 16.829 3.709 24.242 1 36.28 ? CB SSA 501 A 1 HETATM 4 O OG SSA . . . B 2 15.559 3.863 23.621 1 40.88 ? OG SSA 501 A 1 HETATM 5 C C9 SSA . . . B 2 15.857 4.447 26.419 1 35.66 ? C9 SSA 501 A 1 HETATM 6 O O9 SSA . . . B 2 14.787 4.23 26.98 1 37.78 ? O9 SSA 501 A 1 HETATM 7 N N8 SSA . . . B 2 16.371 5.779 26.418 1 39.98 ? N8 SSA 501 A 1 HETATM 8 S S1 SSA . . . B 2 15.712 7.079 27.072 1 46.38 ? S1 SSA 501 A 1 HETATM 9 O O1S SSA . . . B 2 15.228 6.65 28.336 1 54.13 ? O1S SSA 501 A 1 HETATM 10 O O2S SSA . . . B 2 16.546 8.221 26.951 1 51.55 ? O2S SSA 501 A 1 HETATM 11 O O5' SSA . . . B 2 14.407 7.405 26.213 1 57.06 ? O5' SSA 501 A 1 HETATM 12 C C5' SSA . . . B 2 14.479 7.217 24.807 1 49.93 ? C5' SSA 501 A 1 HETATM 13 C C4' SSA . . . B 2 13.715 8.289 24.072 1 49.26 ? C4' SSA 501 A 1 HETATM 14 O O4' SSA . . . B 2 12.311 8.225 24.432 1 50.33 ? O4' SSA 501 A 1 HETATM 15 C C3' SSA . . . B 2 14.109 9.719 24.398 1 50.38 ? C3' SSA 501 A 1 HETATM 16 O O3' SSA . . . B 2 15.274 10.141 23.713 1 53.25 ? O3' SSA 501 A 1 HETATM 17 C C2' SSA . . . B 2 12.858 10.504 24.026 1 51.12 ? C2' SSA 501 A 1 HETATM 18 O O2' SSA . . . B 2 12.791 10.704 22.622 1 54.4 ? O2' SSA 501 A 1 HETATM 19 C C1' SSA . . . B 2 11.754 9.523 24.427 1 49.69 ? C1' SSA 501 A 1 HETATM 20 N N9 SSA . . . B 2 11.199 9.818 25.763 1 49.7 ? N9 SSA 501 A 1 HETATM 21 C C8 SSA . . . B 2 11.788 9.586 26.979 1 49.12 ? C8 SSA 501 A 1 HETATM 22 N N7 SSA . . . B 2 11.072 9.976 28.007 1 48.76 ? N7 SSA 501 A 1 HETATM 23 C C5 SSA . . . B 2 9.927 10.502 27.427 1 47.63 ? C5 SSA 501 A 1 HETATM 24 C C6 SSA . . . B 2 8.768 11.092 27.97 1 41.17 ? C6 SSA 501 A 1 HETATM 25 N N6 SSA . . . B 2 8.572 11.275 29.278 1 42.81 ? N6 SSA 501 A 1 HETATM 26 N N1 SSA . . . B 2 7.81 11.506 27.113 1 41.14 ? N1 SSA 501 A 1 HETATM 27 C C2 SSA . . . B 2 8.005 11.344 25.802 1 45.03 ? C2 SSA 501 A 1 HETATM 28 N N3 SSA . . . B 2 9.055 10.811 25.175 1 47.08 ? N3 SSA 501 A 1 HETATM 29 C C4 SSA . . . B 2 9.989 10.407 26.045 1 50.79 ? C4 SSA 501 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 29 #