data_6OTI # _model_server_result.job_id WDKMNzMGFVq5m_rkKz1SWg _model_server_result.datetime_utc '2024-11-26 05:44:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6OTI # _exptl.entry_id 6OTI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.45 _cell.angle_gamma 90 _cell.entry_id 6OTI _cell.length_a 42.503 _cell.length_b 41.603 _cell.length_c 72.49 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 91 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc2 A NE2 HIS 93 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc3 A ND1 HIS 116 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C NAJ N84 . A N84 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc5 B ZN ZN . A ZN 301 1_555 C SAG N84 . A N84 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 371 n n C C2 TRS sing 372 n n C C3 TRS sing 373 n n C N TRS sing 374 n n C1 O1 TRS sing 375 n n C1 H11 TRS sing 376 n n C1 H12 TRS sing 377 n n C2 O2 TRS sing 378 n n C2 H21 TRS sing 379 n n C2 H22 TRS sing 380 n n C3 O3 TRS sing 381 n n C3 H31 TRS sing 382 n n C3 H32 TRS sing 383 n n N HN1 TRS sing 384 n n N HN2 TRS sing 385 n n N HN3 TRS sing 386 n n O1 HO1 TRS sing 387 n n O2 HO2 TRS sing 388 n n O3 HO3 TRS sing 389 n n # _atom_sites.entry_id 6OTI _atom_sites.fract_transf_matrix[1][1] 0.023528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005627 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 N84 A 1 302 1 N84 561 . D 4 TRS A 1 303 1 TRS TRS . E 5 HOH A 1 401 37 HOH HOH . E 5 HOH A 2 402 32 HOH HOH . E 5 HOH A 3 403 2 HOH HOH . E 5 HOH A 4 404 24 HOH HOH . E 5 HOH A 5 405 34 HOH HOH . E 5 HOH A 6 406 20 HOH HOH . E 5 HOH A 7 407 3 HOH HOH . E 5 HOH A 8 408 31 HOH HOH . E 5 HOH A 9 409 33 HOH HOH . E 5 HOH A 10 410 6 HOH HOH . E 5 HOH A 11 411 10 HOH HOH . E 5 HOH A 12 412 8 HOH HOH . E 5 HOH A 13 413 18 HOH HOH . E 5 HOH A 14 414 9 HOH HOH . E 5 HOH A 15 415 14 HOH HOH . E 5 HOH A 16 416 7 HOH HOH . E 5 HOH A 17 417 38 HOH HOH . E 5 HOH A 18 418 27 HOH HOH . E 5 HOH A 19 419 26 HOH HOH . E 5 HOH A 20 420 41 HOH HOH . E 5 HOH A 21 421 15 HOH HOH . E 5 HOH A 22 422 13 HOH HOH . E 5 HOH A 23 423 16 HOH HOH . E 5 HOH A 24 424 39 HOH HOH . E 5 HOH A 25 425 21 HOH HOH . E 5 HOH A 26 426 11 HOH HOH . E 5 HOH A 27 427 30 HOH HOH . E 5 HOH A 28 428 1 HOH HOH . E 5 HOH A 29 429 5 HOH HOH . E 5 HOH A 30 430 12 HOH HOH . E 5 HOH A 31 431 17 HOH HOH . E 5 HOH A 32 432 40 HOH HOH . E 5 HOH A 33 433 35 HOH HOH . E 5 HOH A 34 434 36 HOH HOH . E 5 HOH A 35 435 22 HOH HOH . E 5 HOH A 36 436 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 4 -7.461 -2.333 11.319 1 60.79 ? C TRS 303 A 1 HETATM 2 C C1 TRS . . . D 4 -6.886 -0.975 10.914 1 58.39 ? C1 TRS 303 A 1 HETATM 3 C C2 TRS . . . D 4 -7.918 -2.307 12.787 1 56.73 ? C2 TRS 303 A 1 HETATM 4 C C3 TRS . . . D 4 -6.398 -3.423 11.141 1 58.95 ? C3 TRS 303 A 1 HETATM 5 N N TRS . . . D 4 -8.578 -2.613 10.438 1 71.72 ? N TRS 303 A 1 HETATM 6 O O1 TRS . . . D 4 -6.697 -0.952 9.52 1 55.95 ? O1 TRS 303 A 1 HETATM 7 O O2 TRS . . . D 4 -9.101 -1.56 12.967 1 54.71 ? O2 TRS 303 A 1 HETATM 8 O O3 TRS . . . D 4 -6.617 -4.132 9.944 1 59 ? O3 TRS 303 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #