data_6OTJ
#
_model_server_result.job_id            XbI03IENqFd5yXc9tEAPzQ 
_model_server_result.datetime_utc      '2024-12-26 23:41:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6otj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VA","auth_seq_id":519}' 
#
_entry.id    6OTJ 
#
_exptl.entry_id    6OTJ 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    21 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OTJ 
_cell.length_a            121.73 
_cell.length_b            121.73 
_cell.length_c            301.81 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6OTJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,AB 1 1 
B,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,BB 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 M N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 X N N 
? 4 AA N N 
? 4 FA N N 
? 4 GA N N 
? 4 JA N N 
? 4 LA N N 
? 4 NA N N 
? 4 PA N N 
? 4 RA N N 
? 4 UA N N 
? 4 VA N N 
? 4 WA N N 
? 4 XA N N 
? 4 ZA N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6OTJ 
_atom_sites.fract_transf_matrix[1][1]    0.008215 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003313 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TYR A 1 501 501 TYR TYR . 
D 3 SO4 A 1 502 601 SO4 SO4 . 
E 3 SO4 A 1 503 701 SO4 SO4 . 
F 3 SO4 A 1 504 801 SO4 SO4 . 
G 4 EDO A 1 505 901 EDO EDO . 
H 3 SO4 A 1 506 1101 SO4 SO4 . 
I 3 SO4 A 1 507 1201 SO4 SO4 . 
J 3 SO4 A 1 508 1301 SO4 SO4 . 
K 3 SO4 A 1 509 1401 SO4 SO4 . 
L 3 SO4 A 1 510 1501 SO4 SO4 . 
M 4 EDO A 1 511 1601 EDO EDO . 
N 3 SO4 A 1 512 1701 SO4 SO4 . 
O 3 SO4 A 1 513 1801 SO4 SO4 . 
P 3 SO4 A 1 514 2101 SO4 SO4 . 
Q 4 EDO A 1 515 2201 EDO EDO . 
R 4 EDO A 1 516 2301 EDO EDO . 
S 4 EDO A 1 517 2401 EDO EDO . 
T 4 EDO A 1 518 2501 EDO EDO . 
U 4 EDO A 1 519 2601 EDO EDO . 
V 3 SO4 A 1 520 2701 SO4 SO4 . 
W 3 SO4 A 1 521 2801 SO4 SO4 . 
X 4 EDO A 1 522 2901 EDO EDO . 
Y 3 SO4 A 1 523 3001 SO4 SO4 . 
Z 3 SO4 A 1 524 3101 SO4 SO4 . 
AA 4 EDO A 1 525 3201 EDO EDO . 
BA 3 SO4 A 1 526 3401 SO4 SO4 . 
CA 3 SO4 A 1 527 3501 SO4 SO4 . 
DA 2 TYR B 1 501 501 TYR TYR . 
EA 3 SO4 B 1 502 601 SO4 SO4 . 
FA 4 EDO B 1 503 701 EDO EDO . 
GA 4 EDO B 1 504 801 EDO EDO . 
HA 3 SO4 B 1 505 901 SO4 SO4 . 
IA 3 SO4 B 1 506 1001 SO4 SO4 . 
JA 4 EDO B 1 507 1101 EDO EDO . 
KA 3 SO4 B 1 508 1201 SO4 SO4 . 
LA 4 EDO B 1 509 1301 EDO EDO . 
MA 3 SO4 B 1 510 1401 SO4 SO4 . 
NA 4 EDO B 1 511 1501 EDO EDO . 
OA 3 SO4 B 1 512 1701 SO4 SO4 . 
PA 4 EDO B 1 513 1801 EDO EDO . 
QA 3 SO4 B 1 514 1901 SO4 SO4 . 
RA 4 EDO B 1 515 2001 EDO EDO . 
SA 3 SO4 B 1 516 2101 SO4 SO4 . 
TA 3 SO4 B 1 517 2201 SO4 SO4 . 
UA 4 EDO B 1 518 2301 EDO EDO . 
VA 4 EDO B 1 519 2401 EDO EDO . 
WA 4 EDO B 1 520 2501 EDO EDO . 
XA 4 EDO B 1 521 2601 EDO EDO . 
YA 3 SO4 B 1 522 2801 SO4 SO4 . 
ZA 4 EDO B 1 523 2901 EDO EDO . 
AB 5 HOH A 1 601 11 HOH HOH . 
AB 5 HOH A 2 602 12 HOH HOH . 
AB 5 HOH A 3 603 33 HOH HOH . 
AB 5 HOH A 4 604 56 HOH HOH . 
AB 5 HOH A 5 605 52 HOH HOH . 
AB 5 HOH A 6 606 19 HOH HOH . 
AB 5 HOH A 7 607 4 HOH HOH . 
AB 5 HOH A 8 608 42 HOH HOH . 
AB 5 HOH A 9 609 45 HOH HOH . 
AB 5 HOH A 10 610 9 HOH HOH . 
AB 5 HOH A 11 611 30 HOH HOH . 
AB 5 HOH A 12 612 26 HOH HOH . 
AB 5 HOH A 13 613 23 HOH HOH . 
AB 5 HOH A 14 614 51 HOH HOH . 
AB 5 HOH A 15 615 27 HOH HOH . 
AB 5 HOH A 16 616 15 HOH HOH . 
AB 5 HOH A 17 617 6 HOH HOH . 
AB 5 HOH A 18 618 24 HOH HOH . 
AB 5 HOH A 19 619 48 HOH HOH . 
AB 5 HOH A 20 620 37 HOH HOH . 
AB 5 HOH A 21 621 5 HOH HOH . 
AB 5 HOH A 22 622 57 HOH HOH . 
AB 5 HOH A 23 623 49 HOH HOH . 
AB 5 HOH A 24 624 47 HOH HOH . 
AB 5 HOH A 25 625 13 HOH HOH . 
AB 5 HOH A 26 626 29 HOH HOH . 
AB 5 HOH A 27 627 43 HOH HOH . 
AB 5 HOH A 28 628 54 HOH HOH . 
AB 5 HOH A 29 629 8 HOH HOH . 
AB 5 HOH A 30 630 28 HOH HOH . 
AB 5 HOH A 31 631 53 HOH HOH . 
AB 5 HOH A 32 632 32 HOH HOH . 
AB 5 HOH A 33 633 44 HOH HOH . 
AB 5 HOH A 34 634 58 HOH HOH . 
AB 5 HOH A 35 635 7 HOH HOH . 
AB 5 HOH A 36 636 55 HOH HOH . 
BB 5 HOH B 1 601 22 HOH HOH . 
BB 5 HOH B 2 602 46 HOH HOH . 
BB 5 HOH B 3 603 50 HOH HOH . 
BB 5 HOH B 4 604 17 HOH HOH . 
BB 5 HOH B 5 605 59 HOH HOH . 
BB 5 HOH B 6 606 61 HOH HOH . 
BB 5 HOH B 7 607 41 HOH HOH . 
BB 5 HOH B 8 608 60 HOH HOH . 
BB 5 HOH B 9 609 34 HOH HOH . 
BB 5 HOH B 10 610 35 HOH HOH . 
BB 5 HOH B 11 611 36 HOH HOH . 
BB 5 HOH B 12 612 38 HOH HOH . 
BB 5 HOH B 13 613 40 HOH HOH . 
BB 5 HOH B 14 614 25 HOH HOH . 
BB 5 HOH B 15 615 39 HOH HOH . 
BB 5 HOH B 16 616 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . VA 4 -80.101 9.228 40.118 1 77.84 ? C1 EDO 519 B 1 
HETATM 2 O O1 EDO . . . VA 4 -80.135 7.796 40.136 1 67.88 ? O1 EDO 519 B 1 
HETATM 3 C C2 EDO . . . VA 4 -81.434 9.758 39.598 1 86.2 ? C2 EDO 519 B 1 
HETATM 4 O O2 EDO . . . VA 4 -81.414 11.191 39.595 1 93.63 ? O2 EDO 519 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           4 
#