data_6OTO
#
_model_server_result.job_id            LKHpM92995lGgESLFeP-8Q 
_model_server_result.datetime_utc      '2024-11-21 17:36:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oto 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6OTO 
#
_exptl.entry_id    6OTO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.19 
_cell.angle_gamma         90 
_cell.entry_id            6OTO 
_cell.length_a            42.002 
_cell.length_b            40.842 
_cell.length_c            71.112 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OTO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C NAJ N84 . A N84 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     6OTO 
_atom_sites.fract_transf_matrix[1][1]    0.023808 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006019 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024485 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 262 ZN ZN . 
C 3 N84 A 1 302 1 N84 561 . 
D 4 GOL A 1 303 400 GOL GOL . 
E 5 DMS A 1 304 1 DMS DMS . 
F 6 HOH A 1 401 270 HOH HOH . 
F 6 HOH A 2 402 286 HOH HOH . 
F 6 HOH A 3 403 262 HOH HOH . 
F 6 HOH A 4 404 266 HOH HOH . 
F 6 HOH A 5 405 251 HOH HOH . 
F 6 HOH A 6 406 55 HOH HOH . 
F 6 HOH A 7 407 18 HOH HOH . 
F 6 HOH A 8 408 240 HOH HOH . 
F 6 HOH A 9 409 59 HOH HOH . 
F 6 HOH A 10 410 222 HOH HOH . 
F 6 HOH A 11 411 124 HOH HOH . 
F 6 HOH A 12 412 104 HOH HOH . 
F 6 HOH A 13 413 263 HOH HOH . 
F 6 HOH A 14 414 100 HOH HOH . 
F 6 HOH A 15 415 50 HOH HOH . 
F 6 HOH A 16 416 257 HOH HOH . 
F 6 HOH A 17 417 247 HOH HOH . 
F 6 HOH A 18 418 272 HOH HOH . 
F 6 HOH A 19 419 86 HOH HOH . 
F 6 HOH A 20 420 67 HOH HOH . 
F 6 HOH A 21 421 116 HOH HOH . 
F 6 HOH A 22 422 120 HOH HOH . 
F 6 HOH A 23 423 253 HOH HOH . 
F 6 HOH A 24 424 98 HOH HOH . 
F 6 HOH A 25 425 280 HOH HOH . 
F 6 HOH A 26 426 265 HOH HOH . 
F 6 HOH A 27 427 117 HOH HOH . 
F 6 HOH A 28 428 267 HOH HOH . 
F 6 HOH A 29 429 57 HOH HOH . 
F 6 HOH A 30 430 111 HOH HOH . 
F 6 HOH A 31 431 278 HOH HOH . 
F 6 HOH A 32 432 137 HOH HOH . 
F 6 HOH A 33 433 113 HOH HOH . 
F 6 HOH A 34 434 84 HOH HOH . 
F 6 HOH A 35 435 153 HOH HOH . 
F 6 HOH A 36 436 17 HOH HOH . 
F 6 HOH A 37 437 87 HOH HOH . 
F 6 HOH A 38 438 275 HOH HOH . 
F 6 HOH A 39 439 101 HOH HOH . 
F 6 HOH A 40 440 218 HOH HOH . 
F 6 HOH A 41 441 66 HOH HOH . 
F 6 HOH A 42 442 47 HOH HOH . 
F 6 HOH A 43 443 211 HOH HOH . 
F 6 HOH A 44 444 8 HOH HOH . 
F 6 HOH A 45 445 140 HOH HOH . 
F 6 HOH A 46 446 158 HOH HOH . 
F 6 HOH A 47 447 76 HOH HOH . 
F 6 HOH A 48 448 194 HOH HOH . 
F 6 HOH A 49 449 83 HOH HOH . 
F 6 HOH A 50 450 176 HOH HOH . 
F 6 HOH A 51 451 40 HOH HOH . 
F 6 HOH A 52 452 42 HOH HOH . 
F 6 HOH A 53 453 96 HOH HOH . 
F 6 HOH A 54 454 255 HOH HOH . 
F 6 HOH A 55 455 26 HOH HOH . 
F 6 HOH A 56 456 125 HOH HOH . 
F 6 HOH A 57 457 80 HOH HOH . 
F 6 HOH A 58 458 183 HOH HOH . 
F 6 HOH A 59 460 63 HOH HOH . 
F 6 HOH A 60 461 268 HOH HOH . 
F 6 HOH A 61 462 29 HOH HOH . 
F 6 HOH A 62 463 152 HOH HOH . 
F 6 HOH A 63 464 16 HOH HOH . 
F 6 HOH A 64 465 58 HOH HOH . 
F 6 HOH A 65 466 89 HOH HOH . 
F 6 HOH A 66 467 259 HOH HOH . 
F 6 HOH A 67 468 35 HOH HOH . 
F 6 HOH A 68 469 69 HOH HOH . 
F 6 HOH A 69 470 214 HOH HOH . 
F 6 HOH A 70 471 126 HOH HOH . 
F 6 HOH A 71 472 231 HOH HOH . 
F 6 HOH A 72 473 71 HOH HOH . 
F 6 HOH A 73 474 91 HOH HOH . 
F 6 HOH A 74 475 11 HOH HOH . 
F 6 HOH A 75 476 90 HOH HOH . 
F 6 HOH A 76 477 2 HOH HOH . 
F 6 HOH A 77 478 216 HOH HOH . 
F 6 HOH A 78 479 145 HOH HOH . 
F 6 HOH A 79 480 28 HOH HOH . 
F 6 HOH A 80 481 6 HOH HOH . 
F 6 HOH A 81 482 5 HOH HOH . 
F 6 HOH A 82 483 121 HOH HOH . 
F 6 HOH A 83 484 13 HOH HOH . 
F 6 HOH A 84 485 9 HOH HOH . 
F 6 HOH A 85 486 4 HOH HOH . 
F 6 HOH A 86 487 130 HOH HOH . 
F 6 HOH A 87 488 206 HOH HOH . 
F 6 HOH A 88 489 147 HOH HOH . 
F 6 HOH A 89 490 95 HOH HOH . 
F 6 HOH A 90 491 3 HOH HOH . 
F 6 HOH A 91 492 134 HOH HOH . 
F 6 HOH A 92 493 128 HOH HOH . 
F 6 HOH A 93 494 44 HOH HOH . 
F 6 HOH A 94 495 14 HOH HOH . 
F 6 HOH A 95 496 172 HOH HOH . 
F 6 HOH A 96 497 19 HOH HOH . 
F 6 HOH A 97 498 7 HOH HOH . 
F 6 HOH A 98 499 203 HOH HOH . 
F 6 HOH A 99 500 30 HOH HOH . 
F 6 HOH A 100 501 94 HOH HOH . 
F 6 HOH A 101 502 15 HOH HOH . 
F 6 HOH A 102 503 198 HOH HOH . 
F 6 HOH A 103 504 264 HOH HOH . 
F 6 HOH A 104 505 123 HOH HOH . 
F 6 HOH A 105 506 200 HOH HOH . 
F 6 HOH A 106 507 92 HOH HOH . 
F 6 HOH A 107 508 24 HOH HOH . 
F 6 HOH A 108 509 112 HOH HOH . 
F 6 HOH A 109 510 131 HOH HOH . 
F 6 HOH A 110 511 149 HOH HOH . 
F 6 HOH A 111 512 75 HOH HOH . 
F 6 HOH A 112 513 230 HOH HOH . 
F 6 HOH A 113 514 32 HOH HOH . 
F 6 HOH A 114 515 20 HOH HOH . 
F 6 HOH A 115 516 129 HOH HOH . 
F 6 HOH A 116 517 144 HOH HOH . 
F 6 HOH A 117 518 118 HOH HOH . 
F 6 HOH A 118 519 21 HOH HOH . 
F 6 HOH A 119 520 52 HOH HOH . 
F 6 HOH A 120 521 261 HOH HOH . 
F 6 HOH A 121 522 64 HOH HOH . 
F 6 HOH A 122 523 159 HOH HOH . 
F 6 HOH A 123 524 229 HOH HOH . 
F 6 HOH A 124 525 105 HOH HOH . 
F 6 HOH A 125 526 191 HOH HOH . 
F 6 HOH A 126 527 107 HOH HOH . 
F 6 HOH A 127 528 269 HOH HOH . 
F 6 HOH A 128 529 109 HOH HOH . 
F 6 HOH A 129 530 146 HOH HOH . 
F 6 HOH A 130 531 10 HOH HOH . 
F 6 HOH A 131 532 53 HOH HOH . 
F 6 HOH A 132 533 56 HOH HOH . 
F 6 HOH A 133 534 166 HOH HOH . 
F 6 HOH A 134 535 246 HOH HOH . 
F 6 HOH A 135 536 177 HOH HOH . 
F 6 HOH A 136 537 41 HOH HOH . 
F 6 HOH A 137 538 33 HOH HOH . 
F 6 HOH A 138 539 182 HOH HOH . 
F 6 HOH A 139 540 209 HOH HOH . 
F 6 HOH A 140 541 173 HOH HOH . 
F 6 HOH A 141 542 258 HOH HOH . 
F 6 HOH A 142 543 31 HOH HOH . 
F 6 HOH A 143 544 70 HOH HOH . 
F 6 HOH A 144 545 103 HOH HOH . 
F 6 HOH A 145 546 1 HOH HOH . 
F 6 HOH A 146 547 43 HOH HOH . 
F 6 HOH A 147 548 27 HOH HOH . 
F 6 HOH A 148 549 88 HOH HOH . 
F 6 HOH A 149 550 151 HOH HOH . 
F 6 HOH A 150 551 175 HOH HOH . 
F 6 HOH A 151 552 184 HOH HOH . 
F 6 HOH A 152 553 108 HOH HOH . 
F 6 HOH A 153 554 34 HOH HOH . 
F 6 HOH A 154 555 38 HOH HOH . 
F 6 HOH A 155 556 68 HOH HOH . 
F 6 HOH A 156 557 106 HOH HOH . 
F 6 HOH A 157 558 12 HOH HOH . 
F 6 HOH A 158 559 138 HOH HOH . 
F 6 HOH A 159 560 154 HOH HOH . 
F 6 HOH A 160 561 81 HOH HOH . 
F 6 HOH A 161 562 93 HOH HOH . 
F 6 HOH A 162 563 248 HOH HOH . 
F 6 HOH A 163 564 51 HOH HOH . 
F 6 HOH A 164 565 46 HOH HOH . 
F 6 HOH A 165 566 236 HOH HOH . 
F 6 HOH A 166 567 39 HOH HOH . 
F 6 HOH A 167 568 79 HOH HOH . 
F 6 HOH A 168 569 180 HOH HOH . 
F 6 HOH A 169 570 22 HOH HOH . 
F 6 HOH A 170 571 165 HOH HOH . 
F 6 HOH A 171 573 277 HOH HOH . 
F 6 HOH A 172 574 204 HOH HOH . 
F 6 HOH A 173 575 201 HOH HOH . 
F 6 HOH A 174 576 243 HOH HOH . 
F 6 HOH A 175 577 249 HOH HOH . 
F 6 HOH A 176 578 25 HOH HOH . 
F 6 HOH A 177 579 283 HOH HOH . 
F 6 HOH A 178 580 186 HOH HOH . 
F 6 HOH A 179 581 60 HOH HOH . 
F 6 HOH A 180 582 77 HOH HOH . 
F 6 HOH A 181 583 174 HOH HOH . 
F 6 HOH A 182 584 148 HOH HOH . 
F 6 HOH A 183 585 65 HOH HOH . 
F 6 HOH A 184 586 132 HOH HOH . 
F 6 HOH A 185 587 36 HOH HOH . 
F 6 HOH A 186 588 133 HOH HOH . 
F 6 HOH A 187 589 241 HOH HOH . 
F 6 HOH A 188 590 279 HOH HOH . 
F 6 HOH A 189 591 256 HOH HOH . 
F 6 HOH A 190 592 74 HOH HOH . 
F 6 HOH A 191 593 61 HOH HOH . 
F 6 HOH A 192 594 228 HOH HOH . 
F 6 HOH A 193 595 167 HOH HOH . 
F 6 HOH A 194 596 250 HOH HOH . 
F 6 HOH A 195 597 215 HOH HOH . 
F 6 HOH A 196 598 284 HOH HOH . 
F 6 HOH A 197 599 122 HOH HOH . 
F 6 HOH A 198 600 54 HOH HOH . 
F 6 HOH A 199 601 110 HOH HOH . 
F 6 HOH A 200 602 276 HOH HOH . 
F 6 HOH A 201 604 155 HOH HOH . 
F 6 HOH A 202 605 219 HOH HOH . 
F 6 HOH A 203 606 73 HOH HOH . 
F 6 HOH A 204 607 193 HOH HOH . 
F 6 HOH A 205 608 139 HOH HOH . 
F 6 HOH A 206 609 188 HOH HOH . 
F 6 HOH A 207 610 252 HOH HOH . 
F 6 HOH A 208 611 199 HOH HOH . 
F 6 HOH A 209 612 136 HOH HOH . 
F 6 HOH A 210 613 170 HOH HOH . 
F 6 HOH A 211 614 285 HOH HOH . 
F 6 HOH A 212 615 282 HOH HOH . 
F 6 HOH A 213 616 192 HOH HOH . 
F 6 HOH A 214 617 217 HOH HOH . 
F 6 HOH A 215 618 114 HOH HOH . 
F 6 HOH A 216 619 72 HOH HOH . 
F 6 HOH A 217 620 213 HOH HOH . 
F 6 HOH A 218 621 156 HOH HOH . 
F 6 HOH A 219 622 115 HOH HOH . 
F 6 HOH A 220 623 245 HOH HOH . 
F 6 HOH A 221 624 289 HOH HOH . 
F 6 HOH A 222 625 244 HOH HOH . 
F 6 HOH A 223 626 142 HOH HOH . 
F 6 HOH A 224 627 235 HOH HOH . 
F 6 HOH A 225 628 239 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 10.333 -13.599 5.451 1 47.91 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . D 4 9.031 -13.14 5.821 1 48.92 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . D 4 10.865 -14.407 6.631 1 48.41 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . D 4 9.824 -15.286 6.967 1 56.68 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . D 4 12.111 -15.261 6.562 1 49.33 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . D 4 12.751 -15.456 7.789 1 60.37 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#