data_6OUD # _model_server_result.job_id pp7qBe48SLEgI4XkyUOY0g _model_server_result.datetime_utc '2024-11-05 01:26:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6OUD # _exptl.entry_id 6OUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.76 _cell.angle_gamma 90 _cell.entry_id 6OUD _cell.length_a 41.885 _cell.length_b 40.965 _cell.length_c 71.511 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 91 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 A NE2 HIS 93 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc3 A ND1 HIS 116 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C NAJ N7M . A N7M 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 6OUD _atom_sites.fract_transf_matrix[1][1] 0.023875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005846 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024411 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 N7M A 1 302 1 N7M 694 . D 3 N7M A 1 303 2 N7M 694 . E 4 GOL A 1 304 400 GOL GOL . F 5 DMS A 1 305 1 DMS DMS . G 6 HOH A 1 401 327 HOH HOH . G 6 HOH A 2 402 162 HOH HOH . G 6 HOH A 3 403 7 HOH HOH . G 6 HOH A 4 404 199 HOH HOH . G 6 HOH A 5 405 340 HOH HOH . G 6 HOH A 6 406 279 HOH HOH . G 6 HOH A 7 407 353 HOH HOH . G 6 HOH A 8 408 57 HOH HOH . G 6 HOH A 9 409 304 HOH HOH . G 6 HOH A 10 410 68 HOH HOH . G 6 HOH A 11 411 50 HOH HOH . G 6 HOH A 12 412 216 HOH HOH . G 6 HOH A 13 413 181 HOH HOH . G 6 HOH A 14 414 182 HOH HOH . G 6 HOH A 15 415 302 HOH HOH . G 6 HOH A 16 416 248 HOH HOH . G 6 HOH A 17 417 328 HOH HOH . G 6 HOH A 18 418 333 HOH HOH . G 6 HOH A 19 419 83 HOH HOH . G 6 HOH A 20 420 159 HOH HOH . G 6 HOH A 21 421 261 HOH HOH . G 6 HOH A 22 422 180 HOH HOH . G 6 HOH A 23 423 67 HOH HOH . G 6 HOH A 24 424 118 HOH HOH . G 6 HOH A 25 425 158 HOH HOH . G 6 HOH A 26 426 8 HOH HOH . G 6 HOH A 27 427 77 HOH HOH . G 6 HOH A 28 428 232 HOH HOH . G 6 HOH A 29 429 262 HOH HOH . G 6 HOH A 30 430 184 HOH HOH . G 6 HOH A 31 431 172 HOH HOH . G 6 HOH A 32 432 145 HOH HOH . G 6 HOH A 33 433 174 HOH HOH . G 6 HOH A 34 434 139 HOH HOH . G 6 HOH A 35 436 115 HOH HOH . G 6 HOH A 36 437 126 HOH HOH . G 6 HOH A 37 438 23 HOH HOH . G 6 HOH A 38 439 133 HOH HOH . G 6 HOH A 39 440 186 HOH HOH . G 6 HOH A 40 441 65 HOH HOH . G 6 HOH A 41 442 19 HOH HOH . G 6 HOH A 42 443 91 HOH HOH . G 6 HOH A 43 444 61 HOH HOH . G 6 HOH A 44 445 110 HOH HOH . G 6 HOH A 45 446 117 HOH HOH . G 6 HOH A 46 447 343 HOH HOH . G 6 HOH A 47 448 134 HOH HOH . G 6 HOH A 48 449 254 HOH HOH . G 6 HOH A 49 450 151 HOH HOH . G 6 HOH A 50 451 336 HOH HOH . G 6 HOH A 51 452 113 HOH HOH . G 6 HOH A 52 453 127 HOH HOH . G 6 HOH A 53 454 21 HOH HOH . G 6 HOH A 54 455 101 HOH HOH . G 6 HOH A 55 456 84 HOH HOH . G 6 HOH A 56 457 55 HOH HOH . G 6 HOH A 57 458 116 HOH HOH . G 6 HOH A 58 459 290 HOH HOH . G 6 HOH A 59 460 42 HOH HOH . G 6 HOH A 60 461 86 HOH HOH . G 6 HOH A 61 462 88 HOH HOH . G 6 HOH A 62 463 73 HOH HOH . G 6 HOH A 63 464 270 HOH HOH . G 6 HOH A 64 465 235 HOH HOH . G 6 HOH A 65 466 103 HOH HOH . G 6 HOH A 66 467 70 HOH HOH . G 6 HOH A 67 468 312 HOH HOH . G 6 HOH A 68 469 63 HOH HOH . G 6 HOH A 69 470 131 HOH HOH . G 6 HOH A 70 471 5 HOH HOH . G 6 HOH A 71 472 18 HOH HOH . G 6 HOH A 72 473 31 HOH HOH . G 6 HOH A 73 474 105 HOH HOH . G 6 HOH A 74 475 191 HOH HOH . G 6 HOH A 75 476 43 HOH HOH . G 6 HOH A 76 477 137 HOH HOH . G 6 HOH A 77 478 75 HOH HOH . G 6 HOH A 78 479 71 HOH HOH . G 6 HOH A 79 480 107 HOH HOH . G 6 HOH A 80 481 36 HOH HOH . G 6 HOH A 81 482 85 HOH HOH . G 6 HOH A 82 483 226 HOH HOH . G 6 HOH A 83 484 10 HOH HOH . G 6 HOH A 84 485 188 HOH HOH . G 6 HOH A 85 486 114 HOH HOH . G 6 HOH A 86 487 132 HOH HOH . G 6 HOH A 87 488 229 HOH HOH . G 6 HOH A 88 489 14 HOH HOH . G 6 HOH A 89 490 1 HOH HOH . G 6 HOH A 90 491 51 HOH HOH . G 6 HOH A 91 492 257 HOH HOH . G 6 HOH A 92 493 22 HOH HOH . G 6 HOH A 93 494 236 HOH HOH . G 6 HOH A 94 495 78 HOH HOH . G 6 HOH A 95 496 189 HOH HOH . G 6 HOH A 96 497 20 HOH HOH . G 6 HOH A 97 498 4 HOH HOH . G 6 HOH A 98 499 299 HOH HOH . G 6 HOH A 99 500 251 HOH HOH . G 6 HOH A 100 501 108 HOH HOH . G 6 HOH A 101 502 15 HOH HOH . G 6 HOH A 102 503 26 HOH HOH . G 6 HOH A 103 504 124 HOH HOH . G 6 HOH A 104 505 326 HOH HOH . G 6 HOH A 105 506 2 HOH HOH . G 6 HOH A 106 507 66 HOH HOH . G 6 HOH A 107 508 28 HOH HOH . G 6 HOH A 108 509 171 HOH HOH . G 6 HOH A 109 510 121 HOH HOH . G 6 HOH A 110 511 11 HOH HOH . G 6 HOH A 111 512 170 HOH HOH . G 6 HOH A 112 513 25 HOH HOH . G 6 HOH A 113 514 79 HOH HOH . G 6 HOH A 114 515 314 HOH HOH . G 6 HOH A 115 516 13 HOH HOH . G 6 HOH A 116 517 97 HOH HOH . G 6 HOH A 117 518 74 HOH HOH . G 6 HOH A 118 519 293 HOH HOH . G 6 HOH A 119 520 30 HOH HOH . G 6 HOH A 120 521 38 HOH HOH . G 6 HOH A 121 522 305 HOH HOH . G 6 HOH A 122 523 33 HOH HOH . G 6 HOH A 123 524 217 HOH HOH . G 6 HOH A 124 525 238 HOH HOH . G 6 HOH A 125 526 234 HOH HOH . G 6 HOH A 126 527 81 HOH HOH . G 6 HOH A 127 528 17 HOH HOH . G 6 HOH A 128 529 24 HOH HOH . G 6 HOH A 129 530 90 HOH HOH . G 6 HOH A 130 531 219 HOH HOH . G 6 HOH A 131 532 346 HOH HOH . G 6 HOH A 132 533 239 HOH HOH . G 6 HOH A 133 534 156 HOH HOH . G 6 HOH A 134 535 329 HOH HOH . G 6 HOH A 135 536 266 HOH HOH . G 6 HOH A 136 537 60 HOH HOH . G 6 HOH A 137 538 149 HOH HOH . G 6 HOH A 138 539 331 HOH HOH . G 6 HOH A 139 540 204 HOH HOH . G 6 HOH A 140 541 202 HOH HOH . G 6 HOH A 141 542 241 HOH HOH . G 6 HOH A 142 543 338 HOH HOH . G 6 HOH A 143 544 205 HOH HOH . G 6 HOH A 144 545 142 HOH HOH . G 6 HOH A 145 546 35 HOH HOH . G 6 HOH A 146 547 245 HOH HOH . G 6 HOH A 147 548 185 HOH HOH . G 6 HOH A 148 549 58 HOH HOH . G 6 HOH A 149 550 303 HOH HOH . G 6 HOH A 150 551 135 HOH HOH . G 6 HOH A 151 552 120 HOH HOH . G 6 HOH A 152 553 62 HOH HOH . G 6 HOH A 153 554 177 HOH HOH . G 6 HOH A 154 555 136 HOH HOH . G 6 HOH A 155 556 94 HOH HOH . G 6 HOH A 156 557 272 HOH HOH . G 6 HOH A 157 558 176 HOH HOH . G 6 HOH A 158 559 337 HOH HOH . G 6 HOH A 159 560 319 HOH HOH . G 6 HOH A 160 561 44 HOH HOH . G 6 HOH A 161 562 286 HOH HOH . G 6 HOH A 162 563 80 HOH HOH . G 6 HOH A 163 564 140 HOH HOH . G 6 HOH A 164 565 164 HOH HOH . G 6 HOH A 165 566 179 HOH HOH . G 6 HOH A 166 567 29 HOH HOH . G 6 HOH A 167 568 16 HOH HOH . G 6 HOH A 168 569 325 HOH HOH . G 6 HOH A 169 570 69 HOH HOH . G 6 HOH A 170 571 157 HOH HOH . G 6 HOH A 171 572 214 HOH HOH . G 6 HOH A 172 573 47 HOH HOH . G 6 HOH A 173 574 54 HOH HOH . G 6 HOH A 174 575 203 HOH HOH . G 6 HOH A 175 576 106 HOH HOH . G 6 HOH A 176 577 123 HOH HOH . G 6 HOH A 177 578 72 HOH HOH . G 6 HOH A 178 579 308 HOH HOH . G 6 HOH A 179 580 39 HOH HOH . G 6 HOH A 180 581 56 HOH HOH . G 6 HOH A 181 582 243 HOH HOH . G 6 HOH A 182 583 59 HOH HOH . G 6 HOH A 183 584 187 HOH HOH . G 6 HOH A 184 586 32 HOH HOH . G 6 HOH A 185 587 213 HOH HOH . G 6 HOH A 186 588 349 HOH HOH . G 6 HOH A 187 589 147 HOH HOH . G 6 HOH A 188 590 104 HOH HOH . G 6 HOH A 189 591 335 HOH HOH . G 6 HOH A 190 592 3 HOH HOH . G 6 HOH A 191 593 87 HOH HOH . G 6 HOH A 192 594 92 HOH HOH . G 6 HOH A 193 595 154 HOH HOH . G 6 HOH A 194 596 27 HOH HOH . G 6 HOH A 195 597 152 HOH HOH . G 6 HOH A 196 598 285 HOH HOH . G 6 HOH A 197 599 40 HOH HOH . G 6 HOH A 198 600 6 HOH HOH . G 6 HOH A 199 601 119 HOH HOH . G 6 HOH A 200 602 148 HOH HOH . G 6 HOH A 201 603 48 HOH HOH . G 6 HOH A 202 604 218 HOH HOH . G 6 HOH A 203 605 230 HOH HOH . G 6 HOH A 204 606 209 HOH HOH . G 6 HOH A 205 607 76 HOH HOH . G 6 HOH A 206 608 102 HOH HOH . G 6 HOH A 207 609 41 HOH HOH . G 6 HOH A 208 610 12 HOH HOH . G 6 HOH A 209 611 98 HOH HOH . G 6 HOH A 210 612 342 HOH HOH . G 6 HOH A 211 613 46 HOH HOH . G 6 HOH A 212 614 150 HOH HOH . G 6 HOH A 213 615 315 HOH HOH . G 6 HOH A 214 616 129 HOH HOH . G 6 HOH A 215 617 220 HOH HOH . G 6 HOH A 216 618 95 HOH HOH . G 6 HOH A 217 619 153 HOH HOH . G 6 HOH A 218 620 89 HOH HOH . G 6 HOH A 219 621 350 HOH HOH . G 6 HOH A 220 622 34 HOH HOH . G 6 HOH A 221 623 252 HOH HOH . G 6 HOH A 222 624 306 HOH HOH . G 6 HOH A 223 625 320 HOH HOH . G 6 HOH A 224 626 259 HOH HOH . G 6 HOH A 225 627 100 HOH HOH . G 6 HOH A 226 628 247 HOH HOH . G 6 HOH A 227 629 318 HOH HOH . G 6 HOH A 228 630 269 HOH HOH . G 6 HOH A 229 631 178 HOH HOH . G 6 HOH A 230 632 334 HOH HOH . G 6 HOH A 231 633 210 HOH HOH . G 6 HOH A 232 634 221 HOH HOH . G 6 HOH A 233 635 122 HOH HOH . G 6 HOH A 234 636 352 HOH HOH . G 6 HOH A 235 637 146 HOH HOH . G 6 HOH A 236 638 292 HOH HOH . G 6 HOH A 237 639 160 HOH HOH . G 6 HOH A 238 640 295 HOH HOH . G 6 HOH A 239 641 173 HOH HOH . G 6 HOH A 240 642 82 HOH HOH . G 6 HOH A 241 643 190 HOH HOH . G 6 HOH A 242 644 289 HOH HOH . G 6 HOH A 243 645 208 HOH HOH . G 6 HOH A 244 646 277 HOH HOH . G 6 HOH A 245 647 354 HOH HOH . G 6 HOH A 246 648 307 HOH HOH . G 6 HOH A 247 649 294 HOH HOH . G 6 HOH A 248 650 322 HOH HOH . G 6 HOH A 249 651 256 HOH HOH . G 6 HOH A 250 652 300 HOH HOH . G 6 HOH A 251 654 347 HOH HOH . G 6 HOH A 252 655 324 HOH HOH . G 6 HOH A 253 656 183 HOH HOH . G 6 HOH A 254 657 348 HOH HOH . G 6 HOH A 255 658 111 HOH HOH . G 6 HOH A 256 659 223 HOH HOH . G 6 HOH A 257 660 260 HOH HOH . G 6 HOH A 258 661 128 HOH HOH . G 6 HOH A 259 662 165 HOH HOH . G 6 HOH A 260 663 45 HOH HOH . G 6 HOH A 261 664 53 HOH HOH . G 6 HOH A 262 665 284 HOH HOH . G 6 HOH A 263 666 125 HOH HOH . G 6 HOH A 264 667 93 HOH HOH . G 6 HOH A 265 668 317 HOH HOH . G 6 HOH A 266 670 316 HOH HOH . G 6 HOH A 267 671 264 HOH HOH . G 6 HOH A 268 672 267 HOH HOH . G 6 HOH A 269 673 49 HOH HOH . G 6 HOH A 270 674 344 HOH HOH . G 6 HOH A 271 675 99 HOH HOH . G 6 HOH A 272 676 155 HOH HOH . G 6 HOH A 273 677 323 HOH HOH . G 6 HOH A 274 678 278 HOH HOH . G 6 HOH A 275 679 345 HOH HOH . G 6 HOH A 276 680 321 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 9.697 -16.929 17.1 1 39.98 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . E 4 10.953 -16.373 17.419 1 36.83 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . E 4 8.904 -15.993 16.213 1 32.89 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . E 4 7.864 -15.504 17.017 1 41 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . E 4 8.382 -16.693 14.949 1 27.16 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . E 4 7.286 -17.54 15.215 1 30.58 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #