data_6OUW
#
_model_server_result.job_id            M4uWxAfWT2O7bhLFf9VLWA 
_model_server_result.datetime_utc      '2024-11-27 20:27:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ouw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    6OUW 
#
_exptl.entry_id    6OUW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              467.351 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-ACETYL-THIAMINE DIPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.77 
_cell.angle_gamma         90 
_cell.entry_id            6OUW 
_cell.length_a            129.75 
_cell.length_b            85.54 
_cell.length_c            60.572 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OUW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -25.378258 0 54.999193 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 175 A ASP 154 1_555 C MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc2 A OD1 ASN 204 A ASN 183 1_555 C MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc3 A OD1 ASN 437 A ASN 416 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? 
metalc ? metalc4 A O HIS 491 A HIS 470 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc5 A O GLY 493 A GLY 472 1_555 D NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc6 B O13 HTL . A HTL 701 1_555 C MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc7 B O21 HTL . A HTL 701 1_555 C MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc8 C MG MG . A MG 702 1_555 E O HOH . A HOH 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc9 C MG MG . A MG 702 1_555 E O HOH . A HOH 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc10 D NA NA . A NA 703 1_555 E O HOH . A HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc11 D NA NA . A NA 703 1_555 E O HOH . A HOH 882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
#
_chem_comp.formula           'C14 H21 N4 O8 P2 S 1' 
_chem_comp.formula_weight    467.351 
_chem_comp.id                HTL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-ACETYL-THIAMINE DIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2-ACETYL-3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-4-METHYL-5-(4,6,6-TRIHYDROXY-3,5-DIOXA-4,6-DIPHOSPHAHEX-1-YL)THIAZO LIUM INNER SALT P,P'-DIOXIDE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1' C2' HTL doub 152 n y 
N1' C6' HTL sing 153 n y 
C2' C2A HTL sing 154 n n 
C2' N3' HTL sing 155 n y 
C2A H2A1 HTL sing 156 n n 
C2A H2A2 HTL sing 157 n n 
C2A H2A3 HTL sing 158 n n 
N3' C4' HTL doub 159 n y 
C4' N4' HTL sing 160 n n 
C4' C5' HTL sing 161 n y 
N4' "H4'1" HTL sing 162 n n 
N4' "H4'2" HTL sing 163 n n 
C5' C6' HTL doub 164 n y 
C5' C35 HTL sing 165 n n 
C6' H6' HTL sing 166 n n 
C35 N3 HTL sing 167 n n 
C35 H351 HTL sing 168 n n 
C35 H352 HTL sing 169 n n 
N3 C2 HTL doub 170 n y 
N3 C4 HTL sing 171 n y 
C2 S1 HTL sing 172 n y 
C2 C1' HTL sing 173 n n 
S1 C5 HTL sing 174 n y 
C5 C4 HTL doub 175 n y 
C5 C5A HTL sing 176 n n 
C4 C4A HTL sing 177 n n 
C4A H4A1 HTL sing 178 n n 
C4A H4A2 HTL sing 179 n n 
C4A H4A3 HTL sing 180 n n 
C5A C5B HTL sing 181 n n 
C5A H5A1 HTL sing 182 n n 
C5A H5A2 HTL sing 183 n n 
C5B O5G HTL sing 184 n n 
C5B H5B1 HTL sing 185 n n 
C5B H5B2 HTL sing 186 n n 
O5G P1 HTL sing 187 n n 
P1 O11 HTL sing 188 n n 
P1 O12 HTL doub 189 n n 
P1 O13 HTL sing 190 n n 
O11 P2 HTL sing 191 n n 
P2 O21 HTL doub 192 n n 
P2 O22 HTL sing 193 n n 
P2 O23 HTL sing 194 n n 
O22 H22O HTL sing 195 n n 
O23 H23O HTL sing 196 n n 
C1' O2' HTL doub 197 n n 
C1' C3' HTL sing 198 n n 
C3' "H3'1" HTL sing 199 n n 
C3' "H3'2" HTL sing 200 n n 
C3' "H3'3" HTL sing 201 n n 
HO1 O13 HTL sing 202 n n 
#
_atom_sites.entry_id                     6OUW 
_atom_sites.fract_transf_matrix[1][1]    0.007707 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003557 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01169 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018183 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HTL A 1 701 1204 HTL HTL . 
C 3 MG A 1 702 1205 MG MG . 
D 4 NA A 1 703 1 NA NA . 
E 5 HOH A 1 801 119 HOH HOH . 
E 5 HOH A 2 802 101 HOH HOH . 
E 5 HOH A 3 803 108 HOH HOH . 
E 5 HOH A 4 804 84 HOH HOH . 
E 5 HOH A 5 805 49 HOH HOH . 
E 5 HOH A 6 806 120 HOH HOH . 
E 5 HOH A 7 807 6 HOH HOH . 
E 5 HOH A 8 808 21 HOH HOH . 
E 5 HOH A 9 809 16 HOH HOH . 
E 5 HOH A 10 810 4 HOH HOH . 
E 5 HOH A 11 811 33 HOH HOH . 
E 5 HOH A 12 812 76 HOH HOH . 
E 5 HOH A 13 813 79 HOH HOH . 
E 5 HOH A 14 814 58 HOH HOH . 
E 5 HOH A 15 815 20 HOH HOH . 
E 5 HOH A 16 816 54 HOH HOH . 
E 5 HOH A 17 817 116 HOH HOH . 
E 5 HOH A 18 818 32 HOH HOH . 
E 5 HOH A 19 819 23 HOH HOH . 
E 5 HOH A 20 820 10 HOH HOH . 
E 5 HOH A 21 821 36 HOH HOH . 
E 5 HOH A 22 822 67 HOH HOH . 
E 5 HOH A 23 823 22 HOH HOH . 
E 5 HOH A 24 824 53 HOH HOH . 
E 5 HOH A 25 825 51 HOH HOH . 
E 5 HOH A 26 826 55 HOH HOH . 
E 5 HOH A 27 827 69 HOH HOH . 
E 5 HOH A 28 828 17 HOH HOH . 
E 5 HOH A 29 829 97 HOH HOH . 
E 5 HOH A 30 830 60 HOH HOH . 
E 5 HOH A 31 831 43 HOH HOH . 
E 5 HOH A 32 832 99 HOH HOH . 
E 5 HOH A 33 833 48 HOH HOH . 
E 5 HOH A 34 834 42 HOH HOH . 
E 5 HOH A 35 835 1206 HOH HOH . 
E 5 HOH A 36 836 50 HOH HOH . 
E 5 HOH A 37 837 59 HOH HOH . 
E 5 HOH A 38 838 100 HOH HOH . 
E 5 HOH A 39 839 62 HOH HOH . 
E 5 HOH A 40 840 89 HOH HOH . 
E 5 HOH A 41 841 92 HOH HOH . 
E 5 HOH A 42 842 29 HOH HOH . 
E 5 HOH A 43 843 102 HOH HOH . 
E 5 HOH A 44 844 18 HOH HOH . 
E 5 HOH A 45 845 1207 HOH HOH . 
E 5 HOH A 46 846 96 HOH HOH . 
E 5 HOH A 47 847 40 HOH HOH . 
E 5 HOH A 48 848 12 HOH HOH . 
E 5 HOH A 49 849 11 HOH HOH . 
E 5 HOH A 50 850 19 HOH HOH . 
E 5 HOH A 51 851 106 HOH HOH . 
E 5 HOH A 52 852 31 HOH HOH . 
E 5 HOH A 53 853 7 HOH HOH . 
E 5 HOH A 54 854 80 HOH HOH . 
E 5 HOH A 55 855 81 HOH HOH . 
E 5 HOH A 56 856 105 HOH HOH . 
E 5 HOH A 57 857 110 HOH HOH . 
E 5 HOH A 58 858 117 HOH HOH . 
E 5 HOH A 59 859 90 HOH HOH . 
E 5 HOH A 60 860 25 HOH HOH . 
E 5 HOH A 61 861 41 HOH HOH . 
E 5 HOH A 62 862 24 HOH HOH . 
E 5 HOH A 63 863 52 HOH HOH . 
E 5 HOH A 64 864 109 HOH HOH . 
E 5 HOH A 65 865 38 HOH HOH . 
E 5 HOH A 66 866 91 HOH HOH . 
E 5 HOH A 67 867 39 HOH HOH . 
E 5 HOH A 68 868 47 HOH HOH . 
E 5 HOH A 69 869 66 HOH HOH . 
E 5 HOH A 70 870 82 HOH HOH . 
E 5 HOH A 71 871 44 HOH HOH . 
E 5 HOH A 72 872 14 HOH HOH . 
E 5 HOH A 73 873 118 HOH HOH . 
E 5 HOH A 74 874 72 HOH HOH . 
E 5 HOH A 75 875 94 HOH HOH . 
E 5 HOH A 76 876 107 HOH HOH . 
E 5 HOH A 77 877 86 HOH HOH . 
E 5 HOH A 78 878 30 HOH HOH . 
E 5 HOH A 79 879 111 HOH HOH . 
E 5 HOH A 80 880 13 HOH HOH . 
E 5 HOH A 81 881 27 HOH HOH . 
E 5 HOH A 82 882 71 HOH HOH . 
E 5 HOH A 83 883 35 HOH HOH . 
E 5 HOH A 84 884 87 HOH HOH . 
E 5 HOH A 85 885 115 HOH HOH . 
E 5 HOH A 86 886 85 HOH HOH . 
E 5 HOH A 87 887 78 HOH HOH . 
E 5 HOH A 88 888 28 HOH HOH . 
E 5 HOH A 89 889 73 HOH HOH . 
E 5 HOH A 90 890 46 HOH HOH . 
E 5 HOH A 91 891 104 HOH HOH . 
E 5 HOH A 92 892 103 HOH HOH . 
E 5 HOH A 93 893 56 HOH HOH . 
E 5 HOH A 94 894 83 HOH HOH . 
E 5 HOH A 95 895 98 HOH HOH . 
E 5 HOH A 96 896 45 HOH HOH . 
E 5 HOH A 97 897 88 HOH HOH . 
E 5 HOH A 98 898 3 HOH HOH . 
E 5 HOH A 99 899 57 HOH HOH . 
E 5 HOH A 100 900 26 HOH HOH . 
E 5 HOH A 101 901 93 HOH HOH . 
E 5 HOH A 102 902 74 HOH HOH . 
E 5 HOH A 103 903 63 HOH HOH . 
E 5 HOH A 104 904 95 HOH HOH . 
E 5 HOH A 105 905 34 HOH HOH . 
E 5 HOH A 106 906 112 HOH HOH . 
E 5 HOH A 107 907 64 HOH HOH . 
E 5 HOH A 108 908 15 HOH HOH . 
E 5 HOH A 109 909 37 HOH HOH . 
E 5 HOH A 110 910 77 HOH HOH . 
E 5 HOH A 111 911 70 HOH HOH . 
E 5 HOH A 112 912 65 HOH HOH . 
E 5 HOH A 113 913 75 HOH HOH . 
E 5 HOH A 114 914 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1' HTL . . . B 2 -23.561 33.292 25.304 1 39.8 ? N1' HTL 701 A 1 
HETATM 2 C C2' HTL . . . B 2 -22.862 33.233 24.185 1 39.88 ? C2' HTL 701 A 1 
HETATM 3 C C2A HTL . . . B 2 -21.342 33.029 24.268 1 33.55 ? C2A HTL 701 A 1 
HETATM 4 N N3' HTL . . . B 2 -23.439 33.34 22.994 1 42.87 ? N3' HTL 701 A 1 
HETATM 5 C C4' HTL . . . B 2 -24.77 33.516 22.874 1 43.25 ? C4' HTL 701 A 1 
HETATM 6 N N4' HTL . . . B 2 -25.333 33.624 21.561 1 44.38 ? N4' HTL 701 A 1 
HETATM 7 C C5' HTL . . . B 2 -25.557 33.595 24.043 1 44.45 ? C5' HTL 701 A 1 
HETATM 8 C C6' HTL . . . B 2 -24.881 33.466 25.286 1 42.83 ? C6' HTL 701 A 1 
HETATM 9 C C35 HTL . . . B 2 -27.125 33.789 24.04 1 50.45 ? C35 HTL 701 A 1 
HETATM 10 N N3 HTL . . . B 2 -27.572 34.929 23.309 1 66.07 ? N3 HTL 701 A 1 
HETATM 11 C C2 HTL . . . B 2 -28.133 34.908 22.071 1 70.91 ? C2 HTL 701 A 1 
HETATM 12 S S1 HTL . . . B 2 -28.553 36.552 21.556 1 76.18 ? S1 HTL 701 A 1 
HETATM 13 C C5 HTL . . . B 2 -27.941 37.227 23.115 1 74.58 ? C5 HTL 701 A 1 
HETATM 14 C C4 HTL . . . B 2 -27.467 36.214 23.907 1 70.96 ? C4 HTL 701 A 1 
HETATM 15 C C4A HTL . . . B 2 -26.885 36.396 25.276 1 66.48 ? C4A HTL 701 A 1 
HETATM 16 C C5A HTL . . . B 2 -28.007 38.726 23.374 1 72.03 ? C5A HTL 701 A 1 
HETATM 17 C C5B HTL . . . B 2 -27.182 39.562 22.348 1 68.18 ? C5B HTL 701 A 1 
HETATM 18 O O5G HTL . . . B 2 -27.336 40.959 22.66 1 63.14 ? O5G HTL 701 A 1 
HETATM 19 P P1 HTL . . . B 2 -27.075 41.962 21.47 1 53.01 ? P1 HTL 701 A 1 
HETATM 20 O O11 HTL . . . B 2 -28.174 41.701 20.358 1 53.89 ? O11 HTL 701 A 1 
HETATM 21 O O12 HTL . . . B 2 -25.705 41.663 20.909 1 50.36 ? O12 HTL 701 A 1 
HETATM 22 O O13 HTL . . . B 2 -27.131 43.391 21.923 1 48.34 ? O13 HTL 701 A 1 
HETATM 23 P P2 HTL . . . B 2 -29.742 41.958 20.522 1 52.52 ? P2 HTL 701 A 1 
HETATM 24 O O21 HTL . . . B 2 -29.987 43.371 20.979 1 48.55 ? O21 HTL 701 A 1 
HETATM 25 O O22 HTL . . . B 2 -30.359 40.991 21.522 1 52 ? O22 HTL 701 A 1 
HETATM 26 O O23 HTL . . . B 2 -30.354 41.747 19.161 1 48.7 ? O23 HTL 701 A 1 
HETATM 27 C C1' HTL . . . B 2 -28.417 33.763 21.129 1 70.19 ? C1' HTL 701 A 1 
HETATM 28 O O2' HTL . . . B 2 -28.15 32.587 21.416 1 68.15 ? O2' HTL 701 A 1 
HETATM 29 C C3' HTL . . . B 2 -29.052 34.097 19.809 1 74.53 ? C3' HTL 701 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           29 
#