data_6OVA # _model_server_result.job_id wk-kHa8tAvhayxb-3WEZng _model_server_result.datetime_utc '2024-11-29 10:37:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ova # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1200}' # _entry.id 6OVA # _exptl.entry_id 6OVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.438 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-({4-[(3S)-3-cyano-3-cyclopropyl-2-oxopyrrolidin-1-yl]pyridin-2-yl}amino)-N,N-dimethylpyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OVA _cell.length_a 48.073 _cell.length_b 48.073 _cell.length_c 475.025 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H22 N6 O2' _chem_comp.formula_weight 390.438 _chem_comp.id N9G _chem_comp.mon_nstd_flag . _chem_comp.name 6-({4-[(3S)-3-cyano-3-cyclopropyl-2-oxopyrrolidin-1-yl]pyridin-2-yl}amino)-N,N-dimethylpyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C4 N9G doub 237 n n N16 C15 N9G doub 238 n y N16 C11 N9G sing 239 n y C15 C14 N9G sing 240 n y N10 C11 N9G sing 241 n n N10 C9 N9G sing 242 n n C11 C12 N9G doub 243 n y C9 C8 N9G doub 244 n y C9 N28 N9G sing 245 n y C8 C7 N9G sing 246 n y N28 C29 N9G doub 247 n y C14 C13 N9G doub 248 n y C7 C6 N9G doub 249 n y C29 C6 N9G sing 250 n y C6 C4 N9G sing 251 n n C4 N2 N9G sing 252 n n C12 C13 N9G sing 253 n y C13 N17 N9G sing 254 n n N17 C18 N9G sing 255 n n N17 C26 N9G sing 256 n n C18 C19 N9G sing 257 n n C19 C20 N9G sing 258 n n N2 C1 N9G sing 259 n n N2 C3 N9G sing 260 n n C26 O27 N9G doub 261 n n C26 C20 N9G sing 262 n n C21 N22 N9G trip 263 n n C21 C20 N9G sing 264 n n C20 C23 N9G sing 265 n n C23 C25 N9G sing 266 n n C23 C24 N9G sing 267 n n C25 C24 N9G sing 268 n n C7 H1 N9G sing 269 n n C8 H2 N9G sing 270 n n C15 H3 N9G sing 271 n n C24 H4 N9G sing 272 n n C24 H5 N9G sing 273 n n C1 H6 N9G sing 274 n n C1 H7 N9G sing 275 n n C1 H8 N9G sing 276 n n C3 H9 N9G sing 277 n n C3 H10 N9G sing 278 n n C3 H11 N9G sing 279 n n N10 H12 N9G sing 280 n n C12 H13 N9G sing 281 n n C14 H14 N9G sing 282 n n C18 H15 N9G sing 283 n n C18 H16 N9G sing 284 n n C19 H17 N9G sing 285 n n C19 H18 N9G sing 286 n n C23 H19 N9G sing 287 n n C25 H20 N9G sing 288 n n C25 H21 N9G sing 289 n n C29 H22 N9G sing 290 n n # _atom_sites.entry_id 6OVA _atom_sites.fract_transf_matrix[1][1] 0.020802 _atom_sites.fract_transf_matrix[1][2] 0.01201 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N9G A 1 1200 1200 N9G LIG . C 3 HOH A 1 1301 1228 HOH HOH . C 3 HOH A 2 1302 1211 HOH HOH . C 3 HOH A 3 1303 1234 HOH HOH . C 3 HOH A 4 1304 1254 HOH HOH . C 3 HOH A 5 1305 1215 HOH HOH . C 3 HOH A 6 1306 1202 HOH HOH . C 3 HOH A 7 1307 1242 HOH HOH . C 3 HOH A 8 1308 1214 HOH HOH . C 3 HOH A 9 1309 1201 HOH HOH . C 3 HOH A 10 1310 1208 HOH HOH . C 3 HOH A 11 1311 1207 HOH HOH . C 3 HOH A 12 1312 1256 HOH HOH . C 3 HOH A 13 1313 1243 HOH HOH . C 3 HOH A 14 1314 1253 HOH HOH . C 3 HOH A 15 1315 1235 HOH HOH . C 3 HOH A 16 1316 1212 HOH HOH . C 3 HOH A 17 1317 1223 HOH HOH . C 3 HOH A 18 1318 1241 HOH HOH . C 3 HOH A 19 1319 1225 HOH HOH . C 3 HOH A 20 1320 1252 HOH HOH . C 3 HOH A 21 1321 1247 HOH HOH . C 3 HOH A 22 1322 1218 HOH HOH . C 3 HOH A 23 1323 1224 HOH HOH . C 3 HOH A 24 1324 1213 HOH HOH . C 3 HOH A 25 1325 1222 HOH HOH . C 3 HOH A 26 1326 1204 HOH HOH . C 3 HOH A 27 1327 1232 HOH HOH . C 3 HOH A 28 1328 1206 HOH HOH . C 3 HOH A 29 1329 1240 HOH HOH . C 3 HOH A 30 1330 1257 HOH HOH . C 3 HOH A 31 1331 1245 HOH HOH . C 3 HOH A 32 1332 1230 HOH HOH . C 3 HOH A 33 1333 1248 HOH HOH . C 3 HOH A 34 1334 1249 HOH HOH . C 3 HOH A 35 1335 1219 HOH HOH . C 3 HOH A 36 1336 1226 HOH HOH . C 3 HOH A 37 1337 1231 HOH HOH . C 3 HOH A 38 1338 1237 HOH HOH . C 3 HOH A 39 1339 1229 HOH HOH . C 3 HOH A 40 1340 1258 HOH HOH . C 3 HOH A 41 1341 1246 HOH HOH . C 3 HOH A 42 1342 1244 HOH HOH . C 3 HOH A 43 1343 1250 HOH HOH . C 3 HOH A 44 1344 1227 HOH HOH . C 3 HOH A 45 1345 1238 HOH HOH . C 3 HOH A 46 1346 1251 HOH HOH . C 3 HOH A 47 1347 1236 HOH HOH . C 3 HOH A 48 1348 1255 HOH HOH . C 3 HOH A 49 1349 1233 HOH HOH . C 3 HOH A 50 1350 1239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 N9G . . . B 2 25.41 -27.315 4.99 1 103.92 ? C4 N9G 1200 A 1 HETATM 2 C C6 N9G . . . B 2 26.238 -26.081 4.883 1 85.64 ? C6 N9G 1200 A 1 HETATM 3 C C7 N9G . . . B 2 27.659 -26.142 4.817 1 69.88 ? C7 N9G 1200 A 1 HETATM 4 C C8 N9G . . . B 2 28.374 -24.97 4.717 1 63.26 ? C8 N9G 1200 A 1 HETATM 5 C C13 N9G . . . B 2 25.683 -20.065 5.203 1 46.93 ? C13 N9G 1200 A 1 HETATM 6 C C15 N9G . . . B 2 27.701 -19.029 4.35 1 46.66 ? C15 N9G 1200 A 1 HETATM 7 C C20 N9G . . . B 2 22.453 -19.121 6.721 1 60.23 ? C20 N9G 1200 A 1 HETATM 8 C C21 N9G . . . B 2 21.708 -17.843 6.621 1 56.79 ? C21 N9G 1200 A 1 HETATM 9 C C24 N9G . . . B 2 22.956 -18.648 9.28 1 72.91 ? C24 N9G 1200 A 1 HETATM 10 C C26 N9G . . . B 2 23.838 -18.859 6.201 1 59.2 ? C26 N9G 1200 A 1 HETATM 11 C C1 N9G . . . B 2 24.083 -28.971 6.239 1 113.73 ? C1 N9G 1200 A 1 HETATM 12 N N2 N9G . . . B 2 24.9 -27.746 6.181 1 126.26 ? N2 N9G 1200 A 1 HETATM 13 C C3 N9G . . . B 2 25.153 -27.011 7.434 1 131.05 ? C3 N9G 1200 A 1 HETATM 14 O O5 N9G . . . B 2 25.178 -27.954 3.98 1 107.05 ? O5 N9G 1200 A 1 HETATM 15 C C9 N9G . . . B 2 27.665 -23.746 4.686 1 63.24 ? C9 N9G 1200 A 1 HETATM 16 N N10 N9G . . . B 2 28.36 -22.541 4.592 1 51.95 ? N10 N9G 1200 A 1 HETATM 17 C C11 N9G . . . B 2 27.685 -21.325 4.674 1 52.39 ? C11 N9G 1200 A 1 HETATM 18 C C12 N9G . . . B 2 26.363 -21.282 5.152 1 51.01 ? C12 N9G 1200 A 1 HETATM 19 C C14 N9G . . . B 2 26.393 -18.924 4.803 1 44.7 ? C14 N9G 1200 A 1 HETATM 20 N N16 N9G . . . B 2 28.313 -20.21 4.3 1 50.33 ? N16 N9G 1200 A 1 HETATM 21 N N17 N9G . . . B 2 24.376 -19.992 5.704 1 56.02 ? N17 N9G 1200 A 1 HETATM 22 C C18 N9G . . . B 2 23.401 -21.106 5.855 1 58.61 ? C18 N9G 1200 A 1 HETATM 23 C C19 N9G . . . B 2 22.012 -20.39 5.952 1 61.84 ? C19 N9G 1200 A 1 HETATM 24 N N22 N9G . . . B 2 21.191 -16.822 6.647 1 47.53 ? N22 N9G 1200 A 1 HETATM 25 C C23 N9G . . . B 2 22.477 -19.595 8.186 1 72.2 ? C23 N9G 1200 A 1 HETATM 26 C C25 N9G . . . B 2 21.462 -19.027 9.186 1 64.07 ? C25 N9G 1200 A 1 HETATM 27 O O27 N9G . . . B 2 24.363 -17.77 6.255 1 69.74 ? O27 N9G 1200 A 1 HETATM 28 N N28 N9G . . . B 2 26.323 -23.716 4.747 1 54.08 ? N28 N9G 1200 A 1 HETATM 29 C C29 N9G . . . B 2 25.6 -24.823 4.838 1 70.31 ? C29 N9G 1200 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #