data_6OVX
#
_model_server_result.job_id            bddeVIVZNBkcelSyJr2INg 
_model_server_result.datetime_utc      '2025-07-13 21:19:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ovx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    6OVX 
#
_exptl.entry_id    6OVX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OVX 
_cell.length_a            124.479 
_cell.length_b            124.479 
_cell.length_c            107.066 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OVX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        89 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1,2,4,6 
B,E,F,H 2 1,3,5,7 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 248.958 0 
3 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 124.479 124.479 0 
4 'crystal symmetry operation' 3_665 -y+1,x+1,z 0 -1 0 1 0 0 0 0 1 124.479 124.479 0 
5 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 124.479 0 0 
6 'crystal symmetry operation' 4_465 y-1,-x+1,z 0 1 0 -1 0 0 0 0 1 -124.479 124.479 0 
7 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 124.479 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6OVX 
_atom_sites.fract_transf_matrix[1][1]    0.008033 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008033 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00934 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 401 998 NAP NAP . 
D 3 GOL A 1 402 2 GOL GOL . 
E 2 NAP B 1 401 998 NAP NAP . 
F 3 GOL B 1 402 1 GOL GOL . 
G 4 HOH A 1 501 75 HOH HOH . 
G 4 HOH A 2 502 7 HOH HOH . 
G 4 HOH A 3 503 70 HOH HOH . 
G 4 HOH A 4 504 107 HOH HOH . 
G 4 HOH A 5 505 39 HOH HOH . 
G 4 HOH A 6 506 62 HOH HOH . 
G 4 HOH A 7 507 110 HOH HOH . 
G 4 HOH A 8 508 4 HOH HOH . 
G 4 HOH A 9 509 142 HOH HOH . 
G 4 HOH A 10 510 22 HOH HOH . 
G 4 HOH A 11 511 11 HOH HOH . 
G 4 HOH A 12 512 32 HOH HOH . 
G 4 HOH A 13 513 8 HOH HOH . 
G 4 HOH A 14 514 54 HOH HOH . 
G 4 HOH A 15 515 12 HOH HOH . 
G 4 HOH A 16 516 149 HOH HOH . 
G 4 HOH A 17 517 42 HOH HOH . 
G 4 HOH A 18 518 99 HOH HOH . 
G 4 HOH A 19 519 34 HOH HOH . 
G 4 HOH A 20 520 64 HOH HOH . 
G 4 HOH A 21 521 132 HOH HOH . 
G 4 HOH A 22 522 80 HOH HOH . 
G 4 HOH A 23 523 29 HOH HOH . 
G 4 HOH A 24 524 50 HOH HOH . 
G 4 HOH A 25 525 13 HOH HOH . 
G 4 HOH A 26 526 46 HOH HOH . 
G 4 HOH A 27 527 40 HOH HOH . 
G 4 HOH A 28 528 147 HOH HOH . 
G 4 HOH A 29 529 15 HOH HOH . 
G 4 HOH A 30 530 55 HOH HOH . 
G 4 HOH A 31 531 10 HOH HOH . 
G 4 HOH A 32 532 17 HOH HOH . 
G 4 HOH A 33 533 102 HOH HOH . 
G 4 HOH A 34 534 18 HOH HOH . 
G 4 HOH A 35 535 19 HOH HOH . 
G 4 HOH A 36 536 4 HOH HOH . 
G 4 HOH A 37 537 146 HOH HOH . 
G 4 HOH A 38 538 1 HOH HOH . 
G 4 HOH A 39 539 69 HOH HOH . 
G 4 HOH A 40 540 120 HOH HOH . 
G 4 HOH A 41 541 2 HOH HOH . 
G 4 HOH A 42 542 85 HOH HOH . 
G 4 HOH A 43 543 77 HOH HOH . 
G 4 HOH A 44 544 53 HOH HOH . 
G 4 HOH A 45 545 45 HOH HOH . 
G 4 HOH A 46 546 3 HOH HOH . 
G 4 HOH A 47 547 96 HOH HOH . 
G 4 HOH A 48 548 6 HOH HOH . 
G 4 HOH A 49 549 21 HOH HOH . 
G 4 HOH A 50 550 37 HOH HOH . 
G 4 HOH A 51 551 67 HOH HOH . 
G 4 HOH A 52 552 135 HOH HOH . 
G 4 HOH A 53 553 116 HOH HOH . 
G 4 HOH A 54 554 61 HOH HOH . 
G 4 HOH A 55 555 22 HOH HOH . 
G 4 HOH A 56 556 95 HOH HOH . 
G 4 HOH A 57 557 140 HOH HOH . 
G 4 HOH A 58 558 19 HOH HOH . 
G 4 HOH A 59 559 16 HOH HOH . 
G 4 HOH A 60 560 105 HOH HOH . 
G 4 HOH A 61 561 35 HOH HOH . 
G 4 HOH A 62 562 124 HOH HOH . 
G 4 HOH A 63 563 57 HOH HOH . 
G 4 HOH A 64 564 86 HOH HOH . 
G 4 HOH A 65 565 14 HOH HOH . 
G 4 HOH A 66 566 98 HOH HOH . 
G 4 HOH A 67 567 83 HOH HOH . 
G 4 HOH A 68 568 131 HOH HOH . 
G 4 HOH A 69 569 133 HOH HOH . 
G 4 HOH A 70 570 48 HOH HOH . 
G 4 HOH A 71 571 47 HOH HOH . 
G 4 HOH A 72 572 125 HOH HOH . 
G 4 HOH A 73 573 73 HOH HOH . 
G 4 HOH A 74 574 43 HOH HOH . 
G 4 HOH A 75 575 20 HOH HOH . 
G 4 HOH A 76 576 101 HOH HOH . 
G 4 HOH A 77 577 121 HOH HOH . 
G 4 HOH A 78 578 90 HOH HOH . 
G 4 HOH A 79 579 71 HOH HOH . 
G 4 HOH A 80 580 68 HOH HOH . 
G 4 HOH A 81 581 100 HOH HOH . 
G 4 HOH A 82 582 91 HOH HOH . 
G 4 HOH A 83 583 88 HOH HOH . 
G 4 HOH A 84 584 130 HOH HOH . 
G 4 HOH A 85 585 21 HOH HOH . 
G 4 HOH A 86 586 26 HOH HOH . 
H 4 HOH B 1 501 65 HOH HOH . 
H 4 HOH B 2 502 145 HOH HOH . 
H 4 HOH B 3 503 87 HOH HOH . 
H 4 HOH B 4 504 92 HOH HOH . 
H 4 HOH B 5 505 28 HOH HOH . 
H 4 HOH B 6 506 13 HOH HOH . 
H 4 HOH B 7 507 12 HOH HOH . 
H 4 HOH B 8 508 126 HOH HOH . 
H 4 HOH B 9 509 81 HOH HOH . 
H 4 HOH B 10 510 108 HOH HOH . 
H 4 HOH B 11 511 20 HOH HOH . 
H 4 HOH B 12 512 31 HOH HOH . 
H 4 HOH B 13 513 66 HOH HOH . 
H 4 HOH B 14 514 5 HOH HOH . 
H 4 HOH B 15 515 11 HOH HOH . 
H 4 HOH B 16 516 38 HOH HOH . 
H 4 HOH B 17 517 49 HOH HOH . 
H 4 HOH B 18 518 112 HOH HOH . 
H 4 HOH B 19 519 63 HOH HOH . 
H 4 HOH B 20 520 5 HOH HOH . 
H 4 HOH B 21 521 27 HOH HOH . 
H 4 HOH B 22 522 114 HOH HOH . 
H 4 HOH B 23 523 25 HOH HOH . 
H 4 HOH B 24 524 36 HOH HOH . 
H 4 HOH B 25 525 41 HOH HOH . 
H 4 HOH B 26 526 103 HOH HOH . 
H 4 HOH B 27 527 141 HOH HOH . 
H 4 HOH B 28 528 16 HOH HOH . 
H 4 HOH B 29 529 74 HOH HOH . 
H 4 HOH B 30 530 138 HOH HOH . 
H 4 HOH B 31 531 52 HOH HOH . 
H 4 HOH B 32 532 78 HOH HOH . 
H 4 HOH B 33 533 76 HOH HOH . 
H 4 HOH B 34 534 82 HOH HOH . 
H 4 HOH B 35 535 72 HOH HOH . 
H 4 HOH B 36 536 6 HOH HOH . 
H 4 HOH B 37 537 59 HOH HOH . 
H 4 HOH B 38 538 2 HOH HOH . 
H 4 HOH B 39 539 17 HOH HOH . 
H 4 HOH B 40 540 9 HOH HOH . 
H 4 HOH B 41 541 7 HOH HOH . 
H 4 HOH B 42 542 123 HOH HOH . 
H 4 HOH B 43 543 33 HOH HOH . 
H 4 HOH B 44 544 3 HOH HOH . 
H 4 HOH B 45 545 58 HOH HOH . 
H 4 HOH B 46 546 94 HOH HOH . 
H 4 HOH B 47 547 79 HOH HOH . 
H 4 HOH B 48 548 143 HOH HOH . 
H 4 HOH B 49 549 119 HOH HOH . 
H 4 HOH B 50 550 118 HOH HOH . 
H 4 HOH B 51 551 137 HOH HOH . 
H 4 HOH B 52 552 134 HOH HOH . 
H 4 HOH B 53 553 115 HOH HOH . 
H 4 HOH B 54 554 56 HOH HOH . 
H 4 HOH B 55 555 122 HOH HOH . 
H 4 HOH B 56 556 15 HOH HOH . 
H 4 HOH B 57 557 109 HOH HOH . 
H 4 HOH B 58 558 111 HOH HOH . 
H 4 HOH B 59 559 23 HOH HOH . 
H 4 HOH B 60 560 14 HOH HOH . 
H 4 HOH B 61 561 60 HOH HOH . 
H 4 HOH B 62 562 139 HOH HOH . 
H 4 HOH B 63 563 18 HOH HOH . 
H 4 HOH B 64 564 128 HOH HOH . 
H 4 HOH B 65 565 136 HOH HOH . 
H 4 HOH B 66 566 93 HOH HOH . 
H 4 HOH B 67 567 89 HOH HOH . 
H 4 HOH B 68 568 144 HOH HOH . 
H 4 HOH B 69 569 84 HOH HOH . 
H 4 HOH B 70 570 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 5.714 121.351 16.423 1 44.51 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . D 3 6.673 121.448 17.474 1 46.36 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . D 3 6.094 120.296 15.402 1 44.24 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . D 3 5.62 120.697 14.119 1 46.12 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . D 3 7.583 120.01 15.329 1 42.95 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . D 3 7.863 118.82 14.595 1 39.71 ? O3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#