data_6OW0 # _model_server_result.job_id PRvzWstxDMsuGeGN_YZckA _model_server_result.datetime_utc '2025-07-05 07:26:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ow0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1001}' # _entry.id 6OW0 # _exptl.entry_id 6OW0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OW0 _cell.length_a 124.679 _cell.length_b 124.679 _cell.length_c 107.359 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1,2,4,6 B,F,G,I 2 1,3,5,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 249.358 0 3 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 124.679 124.679 0 4 'crystal symmetry operation' 3_665 -y+1,x+1,z 0 -1 0 1 0 0 0 0 1 124.679 124.679 0 5 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 124.679 0 0 6 'crystal symmetry operation' 4_465 y-1,-x+1,z 0 1 0 -1 0 0 0 0 1 -124.679 124.679 0 7 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 124.679 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 250 n n PA O2A NAP sing 251 n n PA O5B NAP sing 252 n n PA O3 NAP sing 253 n n O2A HOA2 NAP sing 254 n n O5B C5B NAP sing 255 n n C5B C4B NAP sing 256 n n C5B H51A NAP sing 257 n n C5B H52A NAP sing 258 n n C4B O4B NAP sing 259 n n C4B C3B NAP sing 260 n n C4B H4B NAP sing 261 n n O4B C1B NAP sing 262 n n C3B O3B NAP sing 263 n n C3B C2B NAP sing 264 n n C3B H3B NAP sing 265 n n O3B HO3A NAP sing 266 n n C2B O2B NAP sing 267 n n C2B C1B NAP sing 268 n n C2B H2B NAP sing 269 n n O2B P2B NAP sing 270 n n C1B N9A NAP sing 271 n n C1B H1B NAP sing 272 n n N9A C8A NAP sing 273 n y N9A C4A NAP sing 274 n y C8A N7A NAP doub 275 n y C8A H8A NAP sing 276 n n N7A C5A NAP sing 277 n y C5A C6A NAP sing 278 n y C5A C4A NAP doub 279 n y C6A N6A NAP sing 280 n n C6A N1A NAP doub 281 n y N6A H61A NAP sing 282 n n N6A H62A NAP sing 283 n n N1A C2A NAP sing 284 n y C2A N3A NAP doub 285 n y C2A H2A NAP sing 286 n n N3A C4A NAP sing 287 n y O3 PN NAP sing 288 n n PN O1N NAP doub 289 n n PN O2N NAP sing 290 n n PN O5D NAP sing 291 n n O5D C5D NAP sing 292 n n C5D C4D NAP sing 293 n n C5D H51N NAP sing 294 n n C5D H52N NAP sing 295 n n C4D O4D NAP sing 296 n n C4D C3D NAP sing 297 n n C4D H4D NAP sing 298 n n O4D C1D NAP sing 299 n n C3D O3D NAP sing 300 n n C3D C2D NAP sing 301 n n C3D H3D NAP sing 302 n n O3D HO3N NAP sing 303 n n C2D O2D NAP sing 304 n n C2D C1D NAP sing 305 n n C2D H2D NAP sing 306 n n O2D HO2N NAP sing 307 n n C1D N1N NAP sing 308 n n C1D H1D NAP sing 309 n n N1N C2N NAP sing 310 n y N1N C6N NAP doub 311 n y C2N C3N NAP doub 312 n y C2N H2N NAP sing 313 n n C3N C7N NAP sing 314 n n C3N C4N NAP sing 315 n y C7N O7N NAP doub 316 n n C7N N7N NAP sing 317 n n N7N H71N NAP sing 318 n n N7N H72N NAP sing 319 n n C4N C5N NAP doub 320 n y C4N H4N NAP sing 321 n n C5N C6N NAP sing 322 n y C5N H5N NAP sing 323 n n C6N H6N NAP sing 324 n n P2B O1X NAP doub 325 n n P2B O2X NAP sing 326 n n P2B O3X NAP sing 327 n n O2X HOP2 NAP sing 328 n n O3X HOP3 NAP sing 329 n n # _atom_sites.entry_id 6OW0 _atom_sites.fract_transf_matrix[1][1] 0.008021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 401 1000 PEG PEG . D 3 NAP A 1 402 1001 NAP NAP . E 4 GOL A 1 403 2 GOL GOL . F 3 NAP B 1 1001 1001 NAP NAP . G 4 GOL B 1 1002 1 GOL GOL . H 5 HOH A 1 501 107 HOH HOH . H 5 HOH A 2 502 69 HOH HOH . H 5 HOH A 3 503 85 HOH HOH . H 5 HOH A 4 504 4 HOH HOH . H 5 HOH A 5 505 16 HOH HOH . H 5 HOH A 6 506 37 HOH HOH . H 5 HOH A 7 507 83 HOH HOH . H 5 HOH A 8 508 19 HOH HOH . H 5 HOH A 9 509 34 HOH HOH . H 5 HOH A 10 510 142 HOH HOH . H 5 HOH A 11 511 13 HOH HOH . H 5 HOH A 12 512 102 HOH HOH . H 5 HOH A 13 513 55 HOH HOH . H 5 HOH A 14 514 61 HOH HOH . H 5 HOH A 15 515 12 HOH HOH . H 5 HOH A 16 516 135 HOH HOH . H 5 HOH A 17 517 42 HOH HOH . H 5 HOH A 18 518 99 HOH HOH . H 5 HOH A 19 519 19 HOH HOH . H 5 HOH A 20 520 1 HOH HOH . H 5 HOH A 21 521 15 HOH HOH . H 5 HOH A 22 522 7 HOH HOH . H 5 HOH A 23 523 62 HOH HOH . H 5 HOH A 24 524 21 HOH HOH . H 5 HOH A 25 525 96 HOH HOH . H 5 HOH A 26 526 77 HOH HOH . H 5 HOH A 27 527 6 HOH HOH . H 5 HOH A 28 528 75 HOH HOH . H 5 HOH A 29 529 86 HOH HOH . H 5 HOH A 30 530 50 HOH HOH . H 5 HOH A 31 531 3 HOH HOH . H 5 HOH A 32 532 10 HOH HOH . H 5 HOH A 33 533 80 HOH HOH . H 5 HOH A 34 534 64 HOH HOH . H 5 HOH A 35 535 2 HOH HOH . H 5 HOH A 36 536 116 HOH HOH . H 5 HOH A 37 537 110 HOH HOH . H 5 HOH A 38 538 94 HOH HOH . H 5 HOH A 39 539 35 HOH HOH . H 5 HOH A 40 540 132 HOH HOH . H 5 HOH A 41 541 22 HOH HOH . H 5 HOH A 42 542 4 HOH HOH . H 5 HOH A 43 543 95 HOH HOH . H 5 HOH A 44 544 18 HOH HOH . H 5 HOH A 45 545 70 HOH HOH . H 5 HOH A 46 546 22 HOH HOH . H 5 HOH A 47 547 105 HOH HOH . H 5 HOH A 48 548 48 HOH HOH . H 5 HOH A 49 549 47 HOH HOH . H 5 HOH A 50 550 32 HOH HOH . H 5 HOH A 51 551 57 HOH HOH . H 5 HOH A 52 552 40 HOH HOH . H 5 HOH A 53 553 124 HOH HOH . H 5 HOH A 54 554 14 HOH HOH . H 5 HOH A 55 555 98 HOH HOH . H 5 HOH A 56 556 43 HOH HOH . H 5 HOH A 57 557 90 HOH HOH . H 5 HOH A 58 558 20 HOH HOH . H 5 HOH A 59 559 73 HOH HOH . H 5 HOH A 60 560 91 HOH HOH . H 5 HOH A 61 561 100 HOH HOH . H 5 HOH A 62 562 68 HOH HOH . H 5 HOH A 63 563 21 HOH HOH . H 5 HOH A 64 564 26 HOH HOH . I 5 HOH B 1 1101 20 HOH HOH . I 5 HOH B 2 1102 36 HOH HOH . I 5 HOH B 3 1103 76 HOH HOH . I 5 HOH B 4 1104 108 HOH HOH . I 5 HOH B 5 1105 11 HOH HOH . I 5 HOH B 6 1106 49 HOH HOH . I 5 HOH B 7 1107 52 HOH HOH . I 5 HOH B 8 1108 29 HOH HOH . I 5 HOH B 9 1109 103 HOH HOH . I 5 HOH B 10 1110 82 HOH HOH . I 5 HOH B 11 1111 79 HOH HOH . I 5 HOH B 12 1112 28 HOH HOH . I 5 HOH B 13 1113 112 HOH HOH . I 5 HOH B 14 1114 2 HOH HOH . I 5 HOH B 15 1115 63 HOH HOH . I 5 HOH B 16 1116 3 HOH HOH . I 5 HOH B 17 1117 31 HOH HOH . I 5 HOH B 18 1118 25 HOH HOH . I 5 HOH B 19 1119 38 HOH HOH . I 5 HOH B 20 1120 66 HOH HOH . I 5 HOH B 21 1121 41 HOH HOH . I 5 HOH B 22 1122 13 HOH HOH . I 5 HOH B 23 1123 5 HOH HOH . I 5 HOH B 24 1124 16 HOH HOH . I 5 HOH B 25 1125 5 HOH HOH . I 5 HOH B 26 1126 128 HOH HOH . I 5 HOH B 27 1127 60 HOH HOH . I 5 HOH B 28 1128 6 HOH HOH . I 5 HOH B 29 1129 74 HOH HOH . I 5 HOH B 30 1130 17 HOH HOH . I 5 HOH B 31 1131 9 HOH HOH . I 5 HOH B 32 1132 72 HOH HOH . I 5 HOH B 33 1133 7 HOH HOH . I 5 HOH B 34 1134 114 HOH HOH . I 5 HOH B 35 1135 15 HOH HOH . I 5 HOH B 36 1136 27 HOH HOH . I 5 HOH B 37 1137 139 HOH HOH . I 5 HOH B 38 1138 109 HOH HOH . I 5 HOH B 39 1139 111 HOH HOH . I 5 HOH B 40 1140 14 HOH HOH . I 5 HOH B 41 1141 137 HOH HOH . I 5 HOH B 42 1142 18 HOH HOH . I 5 HOH B 43 1143 59 HOH HOH . I 5 HOH B 44 1144 119 HOH HOH . I 5 HOH B 45 1145 144 HOH HOH . I 5 HOH B 46 1146 93 HOH HOH . I 5 HOH B 47 1147 89 HOH HOH . I 5 HOH B 48 1148 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . F 3 46.584 99.393 35.607 1 80.1 ? PA NAP 1001 B 1 HETATM 2 O O1A NAP . . . F 3 46.598 100.214 34.354 1 72.22 ? O1A NAP 1001 B 1 HETATM 3 O O2A NAP . . . F 3 45.628 98.209 35.713 1 84.29 ? O2A NAP 1001 B 1 HETATM 4 O O5B NAP . . . F 3 46.337 100.407 36.824 1 78.74 ? O5B NAP 1001 B 1 HETATM 5 C C5B NAP . . . F 3 45.537 100.137 37.966 1 75.93 ? C5B NAP 1001 B 1 HETATM 6 C C4B NAP . . . F 3 45.725 101.364 38.842 1 77.25 ? C4B NAP 1001 B 1 HETATM 7 O O4B NAP . . . F 3 44.71 102.327 38.537 1 78.49 ? O4B NAP 1001 B 1 HETATM 8 C C3B NAP . . . F 3 45.656 101.072 40.33 1 78.7 ? C3B NAP 1001 B 1 HETATM 9 O O3B NAP . . . F 3 46.977 101.038 40.868 1 78.77 ? O3B NAP 1001 B 1 HETATM 10 C C2B NAP . . . F 3 44.804 102.186 40.912 1 78.52 ? C2B NAP 1001 B 1 HETATM 11 O O2B NAP . . . F 3 45.638 103.168 41.526 1 80.85 ? O2B NAP 1001 B 1 HETATM 12 C C1B NAP . . . F 3 44.028 102.753 39.72 1 79.59 ? C1B NAP 1001 B 1 HETATM 13 N N9A NAP . . . F 3 42.624 102.245 39.662 1 80.72 ? N9A NAP 1001 B 1 HETATM 14 C C8A NAP . . . F 3 42.256 100.985 39.323 1 80.91 ? C8A NAP 1001 B 1 HETATM 15 N N7A NAP . . . F 3 40.91 100.834 39.363 1 77.27 ? N7A NAP 1001 B 1 HETATM 16 C C5A NAP . . . F 3 40.39 102.02 39.727 1 79.67 ? C5A NAP 1001 B 1 HETATM 17 C C6A NAP . . . F 3 39.021 102.547 39.952 1 79.46 ? C6A NAP 1001 B 1 HETATM 18 N N6A NAP . . . F 3 37.954 101.727 39.781 1 77.55 ? N6A NAP 1001 B 1 HETATM 19 N N1A NAP . . . F 3 38.894 103.849 40.332 1 78.73 ? N1A NAP 1001 B 1 HETATM 20 C C2A NAP . . . F 3 39.972 104.658 40.502 1 82.31 ? C2A NAP 1001 B 1 HETATM 21 N N3A NAP . . . F 3 41.25 104.239 40.309 1 83.25 ? N3A NAP 1001 B 1 HETATM 22 C C4A NAP . . . F 3 41.518 102.954 39.929 1 81.06 ? C4A NAP 1001 B 1 HETATM 23 O O3 NAP . . . F 3 48.141 98.974 35.825 1 92.05 ? O3 NAP 1001 B 1 HETATM 24 P PN NAP . . . F 3 48.964 98.613 37.192 1 97.14 ? PN NAP 1001 B 1 HETATM 25 O O1N NAP . . . F 3 48.217 99.013 38.454 1 95.38 ? O1N NAP 1001 B 1 HETATM 26 O O2N NAP . . . F 3 50.383 99.118 36.987 1 88.7 ? O2N NAP 1001 B 1 HETATM 27 O O5D NAP . . . F 3 48.983 96.993 37.156 1 96.82 ? O5D NAP 1001 B 1 HETATM 28 C C5D NAP . . . F 3 49.017 96.305 35.903 1 97.15 ? C5D NAP 1001 B 1 HETATM 29 C C4D NAP . . . F 3 49.474 94.86 36.076 1 98.43 ? C4D NAP 1001 B 1 HETATM 30 O O4D NAP . . . F 3 50.089 94.374 34.866 1 99.88 ? O4D NAP 1001 B 1 HETATM 31 C C3D NAP . . . F 3 50.486 94.642 37.195 1 97.41 ? C3D NAP 1001 B 1 HETATM 32 O O3D NAP . . . F 3 49.874 94.464 38.485 1 84.64 ? O3D NAP 1001 B 1 HETATM 33 C C2D NAP . . . F 3 51.282 93.436 36.687 1 105.07 ? C2D NAP 1001 B 1 HETATM 34 O O2D NAP . . . F 3 50.81 92.18 37.207 1 103.07 ? O2D NAP 1001 B 1 HETATM 35 C C1D NAP . . . F 3 51.167 93.476 35.152 1 106.63 ? C1D NAP 1001 B 1 HETATM 36 N N1N NAP . . . F 3 52.46 93.885 34.529 1 117.63 ? N1N NAP 1001 B 1 HETATM 37 C C2N NAP . . . F 3 53.032 93.081 33.611 1 117.72 ? C2N NAP 1001 B 1 HETATM 38 C C3N NAP . . . F 3 54.261 93.41 33.015 1 108.85 ? C3N NAP 1001 B 1 HETATM 39 C C7N NAP . . . F 3 54.872 92.514 31.987 1 103.39 ? C7N NAP 1001 B 1 HETATM 40 O O7N NAP . . . F 3 55.931 92.856 31.49 1 105.19 ? O7N NAP 1001 B 1 HETATM 41 N N7N NAP . . . F 3 54.264 91.383 31.62 1 98.91 ? N7N NAP 1001 B 1 HETATM 42 C C4N NAP . . . F 3 54.92 94.587 33.373 1 106.08 ? C4N NAP 1001 B 1 HETATM 43 C C5N NAP . . . F 3 54.324 95.405 34.321 1 110.93 ? C5N NAP 1001 B 1 HETATM 44 C C6N NAP . . . F 3 53.095 95.032 34.882 1 115.81 ? C6N NAP 1001 B 1 HETATM 45 P P2B NAP . . . F 3 45.1 104.36 42.487 1 86.28 ? P2B NAP 1001 B 1 HETATM 46 O O1X NAP . . . F 3 44.07 103.719 43.413 1 86.25 ? O1X NAP 1001 B 1 HETATM 47 O O2X NAP . . . F 3 46.368 104.815 43.176 1 72.35 ? O2X NAP 1001 B 1 HETATM 48 O O3X NAP . . . F 3 44.52 105.37 41.509 1 88.94 ? O3X NAP 1001 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #