data_6OX5 # _model_server_result.job_id 1BLdXqXQvBirksVbIUS57g _model_server_result.datetime_utc '2025-03-28 06:16:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ox5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6OX5 # _exptl.entry_id 6OX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OX5 _cell.length_a 60.465 _cell.length_b 116.497 _cell.length_c 174.655 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 286 n n N HN1 SAH sing 287 n n N HN2 SAH sing 288 n n CA CB SAH sing 289 n n CA C SAH sing 290 n n CA HA SAH sing 291 n n CB CG SAH sing 292 n n CB HB1 SAH sing 293 n n CB HB2 SAH sing 294 n n CG SD SAH sing 295 n n CG HG1 SAH sing 296 n n CG HG2 SAH sing 297 n n SD C5' SAH sing 298 n n C O SAH doub 299 n n C OXT SAH sing 300 n n OXT HXT SAH sing 301 n n C5' C4' SAH sing 302 n n C5' "H5'1" SAH sing 303 n n C5' "H5'2" SAH sing 304 n n C4' O4' SAH sing 305 n n C4' C3' SAH sing 306 n n C4' H4' SAH sing 307 n n O4' C1' SAH sing 308 n n C3' O3' SAH sing 309 n n C3' C2' SAH sing 310 n n C3' H3' SAH sing 311 n n O3' HO3' SAH sing 312 n n C2' O2' SAH sing 313 n n C2' C1' SAH sing 314 n n C2' H2' SAH sing 315 n n O2' HO2' SAH sing 316 n n C1' N9 SAH sing 317 n n C1' H1' SAH sing 318 n n N9 C8 SAH sing 319 n y N9 C4 SAH sing 320 n y C8 N7 SAH doub 321 n y C8 H8 SAH sing 322 n n N7 C5 SAH sing 323 n y C5 C6 SAH sing 324 n y C5 C4 SAH doub 325 n y C6 N6 SAH sing 326 n n C6 N1 SAH doub 327 n y N6 HN61 SAH sing 328 n n N6 HN62 SAH sing 329 n n N1 C2 SAH sing 330 n y C2 N3 SAH doub 331 n y C2 H2 SAH sing 332 n n N3 C4 SAH sing 333 n y # _atom_sites.entry_id 6OX5 _atom_sites.fract_transf_matrix[1][1] 0.016538 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 601 1000 SAH SAH . D 4 EDO A 1 602 401 EDO EDO . E 4 EDO A 1 603 402 EDO EDO . F 4 EDO A 1 604 403 EDO EDO . G 4 EDO A 1 605 404 EDO EDO . H 4 EDO A 1 606 405 EDO EDO . I 4 EDO A 1 607 406 EDO EDO . J 4 EDO A 1 608 407 EDO EDO . K 4 EDO A 1 609 408 EDO EDO . L 5 HOH Y 1 101 50 HOH HOH . L 5 HOH Y 2 102 175 HOH HOH . L 5 HOH Y 3 103 113 HOH HOH . L 5 HOH Y 4 104 10 HOH HOH . L 5 HOH Y 5 105 30 HOH HOH . L 5 HOH Y 6 106 19 HOH HOH . L 5 HOH Y 7 107 17 HOH HOH . L 5 HOH Y 8 108 144 HOH HOH . L 5 HOH Y 9 109 123 HOH HOH . L 5 HOH Y 10 110 143 HOH HOH . L 5 HOH Y 11 111 102 HOH HOH . L 5 HOH Y 12 112 106 HOH HOH . M 5 HOH A 1 701 137 HOH HOH . M 5 HOH A 2 702 135 HOH HOH . M 5 HOH A 3 703 132 HOH HOH . M 5 HOH A 4 704 68 HOH HOH . M 5 HOH A 5 705 214 HOH HOH . M 5 HOH A 6 706 202 HOH HOH . M 5 HOH A 7 707 89 HOH HOH . M 5 HOH A 8 708 39 HOH HOH . M 5 HOH A 9 709 119 HOH HOH . M 5 HOH A 10 710 205 HOH HOH . M 5 HOH A 11 711 14 HOH HOH . M 5 HOH A 12 712 52 HOH HOH . M 5 HOH A 13 713 166 HOH HOH . M 5 HOH A 14 714 246 HOH HOH . M 5 HOH A 15 715 112 HOH HOH . M 5 HOH A 16 716 76 HOH HOH . M 5 HOH A 17 717 48 HOH HOH . M 5 HOH A 18 718 8 HOH HOH . M 5 HOH A 19 719 243 HOH HOH . M 5 HOH A 20 720 38 HOH HOH . M 5 HOH A 21 721 88 HOH HOH . M 5 HOH A 22 722 99 HOH HOH . M 5 HOH A 23 723 56 HOH HOH . M 5 HOH A 24 724 242 HOH HOH . M 5 HOH A 25 725 128 HOH HOH . M 5 HOH A 26 726 22 HOH HOH . M 5 HOH A 27 727 141 HOH HOH . M 5 HOH A 28 728 118 HOH HOH . M 5 HOH A 29 729 32 HOH HOH . M 5 HOH A 30 730 44 HOH HOH . M 5 HOH A 31 731 110 HOH HOH . M 5 HOH A 32 732 150 HOH HOH . M 5 HOH A 33 733 47 HOH HOH . M 5 HOH A 34 734 28 HOH HOH . M 5 HOH A 35 735 79 HOH HOH . M 5 HOH A 36 736 36 HOH HOH . M 5 HOH A 37 737 203 HOH HOH . M 5 HOH A 38 738 160 HOH HOH . M 5 HOH A 39 739 58 HOH HOH . M 5 HOH A 40 740 136 HOH HOH . M 5 HOH A 41 741 46 HOH HOH . M 5 HOH A 42 742 91 HOH HOH . M 5 HOH A 43 743 49 HOH HOH . M 5 HOH A 44 744 60 HOH HOH . M 5 HOH A 45 745 100 HOH HOH . M 5 HOH A 46 746 97 HOH HOH . M 5 HOH A 47 747 67 HOH HOH . M 5 HOH A 48 748 84 HOH HOH . M 5 HOH A 49 749 59 HOH HOH . M 5 HOH A 50 750 164 HOH HOH . M 5 HOH A 51 751 130 HOH HOH . M 5 HOH A 52 752 82 HOH HOH . M 5 HOH A 53 753 6 HOH HOH . M 5 HOH A 54 754 33 HOH HOH . M 5 HOH A 55 755 53 HOH HOH . M 5 HOH A 56 756 104 HOH HOH . M 5 HOH A 57 757 83 HOH HOH . M 5 HOH A 58 758 80 HOH HOH . M 5 HOH A 59 759 2 HOH HOH . M 5 HOH A 60 760 12 HOH HOH . M 5 HOH A 61 761 161 HOH HOH . M 5 HOH A 62 762 187 HOH HOH . M 5 HOH A 63 763 54 HOH HOH . M 5 HOH A 64 764 15 HOH HOH . M 5 HOH A 65 765 188 HOH HOH . M 5 HOH A 66 766 162 HOH HOH . M 5 HOH A 67 767 200 HOH HOH . M 5 HOH A 68 768 207 HOH HOH . M 5 HOH A 69 769 26 HOH HOH . M 5 HOH A 70 770 117 HOH HOH . M 5 HOH A 71 771 81 HOH HOH . M 5 HOH A 72 772 201 HOH HOH . M 5 HOH A 73 773 120 HOH HOH . M 5 HOH A 74 774 62 HOH HOH . M 5 HOH A 75 775 5 HOH HOH . M 5 HOH A 76 776 138 HOH HOH . M 5 HOH A 77 777 87 HOH HOH . M 5 HOH A 78 778 4 HOH HOH . M 5 HOH A 79 779 172 HOH HOH . M 5 HOH A 80 780 40 HOH HOH . M 5 HOH A 81 781 90 HOH HOH . M 5 HOH A 82 782 34 HOH HOH . M 5 HOH A 83 783 221 HOH HOH . M 5 HOH A 84 784 29 HOH HOH . M 5 HOH A 85 785 35 HOH HOH . M 5 HOH A 86 786 183 HOH HOH . M 5 HOH A 87 787 65 HOH HOH . M 5 HOH A 88 788 18 HOH HOH . M 5 HOH A 89 789 115 HOH HOH . M 5 HOH A 90 790 129 HOH HOH . M 5 HOH A 91 791 64 HOH HOH . M 5 HOH A 92 792 249 HOH HOH . M 5 HOH A 93 793 167 HOH HOH . M 5 HOH A 94 794 231 HOH HOH . M 5 HOH A 95 795 124 HOH HOH . M 5 HOH A 96 796 114 HOH HOH . M 5 HOH A 97 797 101 HOH HOH . M 5 HOH A 98 798 155 HOH HOH . M 5 HOH A 99 799 193 HOH HOH . M 5 HOH A 100 800 108 HOH HOH . M 5 HOH A 101 801 180 HOH HOH . M 5 HOH A 102 802 9 HOH HOH . M 5 HOH A 103 803 105 HOH HOH . M 5 HOH A 104 804 63 HOH HOH . M 5 HOH A 105 805 25 HOH HOH . M 5 HOH A 106 806 13 HOH HOH . M 5 HOH A 107 807 57 HOH HOH . M 5 HOH A 108 808 111 HOH HOH . M 5 HOH A 109 809 247 HOH HOH . M 5 HOH A 110 810 251 HOH HOH . M 5 HOH A 111 811 171 HOH HOH . M 5 HOH A 112 812 127 HOH HOH . M 5 HOH A 113 813 165 HOH HOH . M 5 HOH A 114 814 73 HOH HOH . M 5 HOH A 115 815 16 HOH HOH . M 5 HOH A 116 816 218 HOH HOH . M 5 HOH A 117 817 189 HOH HOH . M 5 HOH A 118 818 21 HOH HOH . M 5 HOH A 119 819 125 HOH HOH . M 5 HOH A 120 820 252 HOH HOH . M 5 HOH A 121 821 208 HOH HOH . M 5 HOH A 122 822 42 HOH HOH . M 5 HOH A 123 823 158 HOH HOH . M 5 HOH A 124 824 121 HOH HOH . M 5 HOH A 125 825 209 HOH HOH . M 5 HOH A 126 826 107 HOH HOH . M 5 HOH A 127 827 31 HOH HOH . M 5 HOH A 128 828 11 HOH HOH . M 5 HOH A 129 829 226 HOH HOH . M 5 HOH A 130 830 69 HOH HOH . M 5 HOH A 131 831 177 HOH HOH . M 5 HOH A 132 832 85 HOH HOH . M 5 HOH A 133 833 145 HOH HOH . M 5 HOH A 134 834 1 HOH HOH . M 5 HOH A 135 835 122 HOH HOH . M 5 HOH A 136 836 219 HOH HOH . M 5 HOH A 137 837 116 HOH HOH . M 5 HOH A 138 838 77 HOH HOH . M 5 HOH A 139 839 196 HOH HOH . M 5 HOH A 140 840 75 HOH HOH . M 5 HOH A 141 841 71 HOH HOH . M 5 HOH A 142 842 191 HOH HOH . M 5 HOH A 143 843 78 HOH HOH . M 5 HOH A 144 844 43 HOH HOH . M 5 HOH A 145 845 230 HOH HOH . M 5 HOH A 146 846 222 HOH HOH . M 5 HOH A 147 847 41 HOH HOH . M 5 HOH A 148 848 70 HOH HOH . M 5 HOH A 149 849 96 HOH HOH . M 5 HOH A 150 850 176 HOH HOH . M 5 HOH A 151 851 61 HOH HOH . M 5 HOH A 152 852 66 HOH HOH . M 5 HOH A 153 853 250 HOH HOH . M 5 HOH A 154 854 152 HOH HOH . M 5 HOH A 155 855 140 HOH HOH . M 5 HOH A 156 856 210 HOH HOH . M 5 HOH A 157 857 24 HOH HOH . M 5 HOH A 158 858 86 HOH HOH . M 5 HOH A 159 859 179 HOH HOH . M 5 HOH A 160 860 93 HOH HOH . M 5 HOH A 161 861 94 HOH HOH . M 5 HOH A 162 862 98 HOH HOH . M 5 HOH A 163 863 157 HOH HOH . M 5 HOH A 164 864 163 HOH HOH . M 5 HOH A 165 865 169 HOH HOH . M 5 HOH A 166 866 228 HOH HOH . M 5 HOH A 167 867 20 HOH HOH . M 5 HOH A 168 868 181 HOH HOH . M 5 HOH A 169 869 192 HOH HOH . M 5 HOH A 170 870 37 HOH HOH . M 5 HOH A 171 871 74 HOH HOH . M 5 HOH A 172 872 148 HOH HOH . M 5 HOH A 173 873 139 HOH HOH . M 5 HOH A 174 874 178 HOH HOH . M 5 HOH A 175 875 173 HOH HOH . M 5 HOH A 176 876 72 HOH HOH . M 5 HOH A 177 877 45 HOH HOH . M 5 HOH A 178 878 184 HOH HOH . M 5 HOH A 179 879 27 HOH HOH . M 5 HOH A 180 880 147 HOH HOH . M 5 HOH A 181 881 92 HOH HOH . M 5 HOH A 182 882 103 HOH HOH . M 5 HOH A 183 883 217 HOH HOH . M 5 HOH A 184 884 134 HOH HOH . M 5 HOH A 185 885 7 HOH HOH . M 5 HOH A 186 886 235 HOH HOH . M 5 HOH A 187 887 199 HOH HOH . M 5 HOH A 188 888 234 HOH HOH . M 5 HOH A 189 889 195 HOH HOH . M 5 HOH A 190 890 185 HOH HOH . M 5 HOH A 191 891 142 HOH HOH . M 5 HOH A 192 892 239 HOH HOH . M 5 HOH A 193 893 170 HOH HOH . M 5 HOH A 194 894 238 HOH HOH . M 5 HOH A 195 895 109 HOH HOH . M 5 HOH A 196 896 23 HOH HOH . M 5 HOH A 197 897 240 HOH HOH . M 5 HOH A 198 898 206 HOH HOH . M 5 HOH A 199 899 225 HOH HOH . M 5 HOH A 200 900 211 HOH HOH . M 5 HOH A 201 901 153 HOH HOH . M 5 HOH A 202 902 174 HOH HOH . M 5 HOH A 203 903 151 HOH HOH . M 5 HOH A 204 904 159 HOH HOH . M 5 HOH A 205 905 149 HOH HOH . M 5 HOH A 206 906 248 HOH HOH . M 5 HOH A 207 907 233 HOH HOH . M 5 HOH A 208 908 220 HOH HOH . M 5 HOH A 209 909 131 HOH HOH . M 5 HOH A 210 910 95 HOH HOH . M 5 HOH A 211 911 227 HOH HOH . M 5 HOH A 212 912 212 HOH HOH . M 5 HOH A 213 913 232 HOH HOH . M 5 HOH A 214 914 216 HOH HOH . M 5 HOH A 215 915 245 HOH HOH . M 5 HOH A 216 916 236 HOH HOH . M 5 HOH A 217 917 126 HOH HOH . M 5 HOH A 218 918 229 HOH HOH . M 5 HOH A 219 919 213 HOH HOH . M 5 HOH A 220 920 198 HOH HOH . M 5 HOH A 221 921 223 HOH HOH . M 5 HOH A 222 922 146 HOH HOH . M 5 HOH A 223 923 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 -21.299 -10.815 -37.189 1 12.82 ? N SAH 601 A 1 HETATM 2 C CA SAH . . . C 3 -20.784 -9.617 -36.505 1 19.09 ? CA SAH 601 A 1 HETATM 3 C CB SAH . . . C 3 -19.267 -9.772 -36.13 1 19.4 ? CB SAH 601 A 1 HETATM 4 C CG SAH . . . C 3 -19.162 -10.525 -34.818 1 19.37 ? CG SAH 601 A 1 HETATM 5 S SD SAH . . . C 3 -19.775 -9.568 -33.382 1 25.16 ? SD SAH 601 A 1 HETATM 6 C C SAH . . . C 3 -20.946 -8.342 -37.398 1 22.6 ? C SAH 601 A 1 HETATM 7 O O SAH . . . C 3 -21.573 -8.479 -38.468 1 22.8 ? O SAH 601 A 1 HETATM 8 O OXT SAH . . . C 3 -20.421 -7.293 -36.961 1 25.4 ? OXT SAH 601 A 1 HETATM 9 C C5' SAH . . . C 3 -20.902 -10.745 -32.578 1 22.76 ? C5' SAH 601 A 1 HETATM 10 C C4' SAH . . . C 3 -22.246 -10.854 -33.31 1 19.82 ? C4' SAH 601 A 1 HETATM 11 O O4' SAH . . . C 3 -22.116 -11.699 -34.479 1 22.52 ? O4' SAH 601 A 1 HETATM 12 C C3' SAH . . . C 3 -23.398 -11.423 -32.476 1 25.04 ? C3' SAH 601 A 1 HETATM 13 O O3' SAH . . . C 3 -24.119 -10.389 -31.858 1 25.15 ? O3' SAH 601 A 1 HETATM 14 C C2' SAH . . . C 3 -24.283 -12.122 -33.51 1 22.46 ? C2' SAH 601 A 1 HETATM 15 O O2' SAH . . . C 3 -25.084 -11.184 -34.222 1 21.79 ? O2' SAH 601 A 1 HETATM 16 C C1' SAH . . . C 3 -23.221 -12.595 -34.56 1 20.57 ? C1' SAH 601 A 1 HETATM 17 N N9 SAH . . . C 3 -22.704 -13.928 -34.386 1 20.69 ? N9 SAH 601 A 1 HETATM 18 C C8 SAH . . . C 3 -21.428 -14.29 -33.889 1 18.9 ? C8 SAH 601 A 1 HETATM 19 N N7 SAH . . . C 3 -21.257 -15.626 -33.881 1 23.18 ? N7 SAH 601 A 1 HETATM 20 C C5 SAH . . . C 3 -22.45 -16.16 -34.392 1 19.41 ? C5 SAH 601 A 1 HETATM 21 C C6 SAH . . . C 3 -22.891 -17.469 -34.63 1 22.52 ? C6 SAH 601 A 1 HETATM 22 N N6 SAH . . . C 3 -22.098 -18.542 -34.376 1 20.82 ? N6 SAH 601 A 1 HETATM 23 N N1 SAH . . . C 3 -24.15 -17.657 -35.147 1 23.63 ? N1 SAH 601 A 1 HETATM 24 C C2 SAH . . . C 3 -24.904 -16.589 -35.39 1 19.12 ? C2 SAH 601 A 1 HETATM 25 N N3 SAH . . . C 3 -24.607 -15.3 -35.208 1 21.32 ? N3 SAH 601 A 1 HETATM 26 C C4 SAH . . . C 3 -23.353 -15.113 -34.703 1 18.89 ? C4 SAH 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #