data_6OXN # _model_server_result.job_id 5v01QlAPuH7wqTK-wbXdDA _model_server_result.datetime_utc '2024-12-04 19:59:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 6OXN # _exptl.entry_id 6OXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6OXN _cell.length_a 158.96 _cell.length_b 158.96 _cell.length_c 94.54 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.48 137.663398 -15.756667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 309 A CYS 303 1_555 A SG CYS 309 A CYS 303 11_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 G NA NA . A NA 406 1_555 H O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? metalc ? metalc2 G NA NA . A NA 406 1_555 H O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6OXN _atom_sites.fract_transf_matrix[1][1] 0.006291 _atom_sites.fract_transf_matrix[1][2] 0.003632 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 3 NAP A 1 402 1 NAP NAP . D 4 GLV A 1 403 1 GLV GLV . E 5 NA A 1 404 1 NA NA . F 5 NA A 1 405 2 NA NA . G 5 NA A 1 406 3 NA NA . H 6 HOH A 1 501 28 HOH HOH . H 6 HOH A 2 502 38 HOH HOH . H 6 HOH A 3 503 29 HOH HOH . H 6 HOH A 4 504 64 HOH HOH . H 6 HOH A 5 505 126 HOH HOH . H 6 HOH A 6 506 131 HOH HOH . H 6 HOH A 7 507 75 HOH HOH . H 6 HOH A 8 508 5 HOH HOH . H 6 HOH A 9 509 8 HOH HOH . H 6 HOH A 10 510 16 HOH HOH . H 6 HOH A 11 511 4 HOH HOH . H 6 HOH A 12 512 128 HOH HOH . H 6 HOH A 13 513 10 HOH HOH . H 6 HOH A 14 514 123 HOH HOH . H 6 HOH A 15 515 40 HOH HOH . H 6 HOH A 16 516 114 HOH HOH . H 6 HOH A 17 517 12 HOH HOH . H 6 HOH A 18 518 27 HOH HOH . H 6 HOH A 19 519 81 HOH HOH . H 6 HOH A 20 520 19 HOH HOH . H 6 HOH A 21 521 42 HOH HOH . H 6 HOH A 22 522 47 HOH HOH . H 6 HOH A 23 523 102 HOH HOH . H 6 HOH A 24 524 17 HOH HOH . H 6 HOH A 25 525 74 HOH HOH . H 6 HOH A 26 526 33 HOH HOH . H 6 HOH A 27 527 26 HOH HOH . H 6 HOH A 28 528 32 HOH HOH . H 6 HOH A 29 529 58 HOH HOH . H 6 HOH A 30 530 54 HOH HOH . H 6 HOH A 31 531 24 HOH HOH . H 6 HOH A 32 532 37 HOH HOH . H 6 HOH A 33 533 30 HOH HOH . H 6 HOH A 34 534 62 HOH HOH . H 6 HOH A 35 535 21 HOH HOH . H 6 HOH A 36 536 9 HOH HOH . H 6 HOH A 37 537 56 HOH HOH . H 6 HOH A 38 538 92 HOH HOH . H 6 HOH A 39 539 45 HOH HOH . H 6 HOH A 40 540 132 HOH HOH . H 6 HOH A 41 541 34 HOH HOH . H 6 HOH A 42 542 6 HOH HOH . H 6 HOH A 43 543 1 HOH HOH . H 6 HOH A 44 544 77 HOH HOH . H 6 HOH A 45 545 35 HOH HOH . H 6 HOH A 46 546 43 HOH HOH . H 6 HOH A 47 547 59 HOH HOH . H 6 HOH A 48 548 107 HOH HOH . H 6 HOH A 49 549 2 HOH HOH . H 6 HOH A 50 550 15 HOH HOH . H 6 HOH A 51 551 7 HOH HOH . H 6 HOH A 52 552 115 HOH HOH . H 6 HOH A 53 553 106 HOH HOH . H 6 HOH A 54 554 78 HOH HOH . H 6 HOH A 55 555 13 HOH HOH . H 6 HOH A 56 556 63 HOH HOH . H 6 HOH A 57 557 85 HOH HOH . H 6 HOH A 58 558 82 HOH HOH . H 6 HOH A 59 559 49 HOH HOH . H 6 HOH A 60 560 25 HOH HOH . H 6 HOH A 61 561 118 HOH HOH . H 6 HOH A 62 562 72 HOH HOH . H 6 HOH A 63 563 31 HOH HOH . H 6 HOH A 64 564 50 HOH HOH . H 6 HOH A 65 565 46 HOH HOH . H 6 HOH A 66 566 18 HOH HOH . H 6 HOH A 67 567 11 HOH HOH . H 6 HOH A 68 568 20 HOH HOH . H 6 HOH A 69 569 83 HOH HOH . H 6 HOH A 70 570 22 HOH HOH . H 6 HOH A 71 571 98 HOH HOH . H 6 HOH A 72 572 51 HOH HOH . H 6 HOH A 73 573 119 HOH HOH . H 6 HOH A 74 574 86 HOH HOH . H 6 HOH A 75 575 67 HOH HOH . H 6 HOH A 76 576 71 HOH HOH . H 6 HOH A 77 577 23 HOH HOH . H 6 HOH A 78 578 111 HOH HOH . H 6 HOH A 79 579 88 HOH HOH . H 6 HOH A 80 580 55 HOH HOH . H 6 HOH A 81 581 60 HOH HOH . H 6 HOH A 82 582 36 HOH HOH . H 6 HOH A 83 583 110 HOH HOH . H 6 HOH A 84 584 52 HOH HOH . H 6 HOH A 85 585 90 HOH HOH . H 6 HOH A 86 586 103 HOH HOH . H 6 HOH A 87 587 53 HOH HOH . H 6 HOH A 88 588 69 HOH HOH . H 6 HOH A 89 589 48 HOH HOH . H 6 HOH A 90 590 122 HOH HOH . H 6 HOH A 91 591 124 HOH HOH . H 6 HOH A 92 592 89 HOH HOH . H 6 HOH A 93 593 41 HOH HOH . H 6 HOH A 94 594 91 HOH HOH . H 6 HOH A 95 595 117 HOH HOH . H 6 HOH A 96 596 70 HOH HOH . H 6 HOH A 97 597 80 HOH HOH . H 6 HOH A 98 598 133 HOH HOH . H 6 HOH A 99 599 116 HOH HOH . H 6 HOH A 100 600 104 HOH HOH . H 6 HOH A 101 601 61 HOH HOH . H 6 HOH A 102 602 121 HOH HOH . H 6 HOH A 103 603 94 HOH HOH . H 6 HOH A 104 604 44 HOH HOH . H 6 HOH A 105 605 101 HOH HOH . H 6 HOH A 106 606 105 HOH HOH . H 6 HOH A 107 607 108 HOH HOH . H 6 HOH A 108 608 39 HOH HOH . H 6 HOH A 109 609 100 HOH HOH . H 6 HOH A 110 610 79 HOH HOH . H 6 HOH A 111 611 130 HOH HOH . H 6 HOH A 112 612 73 HOH HOH . H 6 HOH A 113 613 95 HOH HOH . H 6 HOH A 114 614 84 HOH HOH . H 6 HOH A 115 615 109 HOH HOH . H 6 HOH A 116 616 87 HOH HOH . H 6 HOH A 117 617 57 HOH HOH . H 6 HOH A 118 618 125 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -22.685 _atom_site.Cartn_y 65.809 _atom_site.Cartn_z -42.626 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #