data_6OY8 # _model_server_result.job_id YjkW1UBG7PsDRylx3NWucw _model_server_result.datetime_utc '2024-12-22 01:33:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oy8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":203}' # _entry.id 6OY8 # _exptl.entry_id 6OY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OY8 _cell.length_a 67.95 _cell.length_b 68.079 _cell.length_c 86.919 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N ? 4 K N N ? 4 L N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6OY8 _atom_sites.fract_transf_matrix[1][1] 0.014717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 201 1 SO4 SO4 . E 3 IPA A 1 202 1 IPA IPA . F 4 GOL A 1 203 3 GOL GOL . G 2 SO4 B 1 201 3 SO4 SO4 . H 3 IPA B 1 202 3 IPA IPA . I 4 GOL B 1 203 2 GOL GOL . J 2 SO4 C 1 201 2 SO4 SO4 . K 4 GOL C 1 202 1 GOL GOL . L 4 GOL C 1 203 4 GOL GOL . M 5 HOH A 1 301 387 HOH HOH . M 5 HOH A 2 302 366 HOH HOH . M 5 HOH A 3 303 8 HOH HOH . M 5 HOH A 4 304 28 HOH HOH . M 5 HOH A 5 305 180 HOH HOH . M 5 HOH A 6 306 159 HOH HOH . M 5 HOH A 7 307 228 HOH HOH . M 5 HOH A 8 308 38 HOH HOH . M 5 HOH A 9 309 122 HOH HOH . M 5 HOH A 10 310 14 HOH HOH . M 5 HOH A 11 311 131 HOH HOH . M 5 HOH A 12 312 134 HOH HOH . M 5 HOH A 13 313 95 HOH HOH . M 5 HOH A 14 314 10 HOH HOH . M 5 HOH A 15 315 100 HOH HOH . M 5 HOH A 16 316 167 HOH HOH . M 5 HOH A 17 317 28 HOH HOH . M 5 HOH A 18 318 240 HOH HOH . M 5 HOH A 19 319 185 HOH HOH . M 5 HOH A 20 320 51 HOH HOH . M 5 HOH A 21 321 231 HOH HOH . M 5 HOH A 22 322 345 HOH HOH . M 5 HOH A 23 323 59 HOH HOH . M 5 HOH A 24 324 11 HOH HOH . M 5 HOH A 25 325 76 HOH HOH . M 5 HOH A 26 326 103 HOH HOH . M 5 HOH A 27 327 49 HOH HOH . M 5 HOH A 28 328 199 HOH HOH . M 5 HOH A 29 329 18 HOH HOH . M 5 HOH A 30 330 393 HOH HOH . M 5 HOH A 31 331 81 HOH HOH . M 5 HOH A 32 332 248 HOH HOH . M 5 HOH A 33 333 112 HOH HOH . M 5 HOH A 34 334 204 HOH HOH . M 5 HOH A 35 335 75 HOH HOH . M 5 HOH A 36 336 110 HOH HOH . M 5 HOH A 37 337 2 HOH HOH . M 5 HOH A 38 338 251 HOH HOH . M 5 HOH A 39 339 90 HOH HOH . M 5 HOH A 40 340 9 HOH HOH . M 5 HOH A 41 341 184 HOH HOH . M 5 HOH A 42 342 3 HOH HOH . M 5 HOH A 43 343 183 HOH HOH . M 5 HOH A 44 344 9 HOH HOH . M 5 HOH A 45 345 165 HOH HOH . M 5 HOH A 46 346 289 HOH HOH . M 5 HOH A 47 347 93 HOH HOH . M 5 HOH A 48 348 84 HOH HOH . M 5 HOH A 49 349 29 HOH HOH . M 5 HOH A 50 350 188 HOH HOH . M 5 HOH A 51 351 162 HOH HOH . M 5 HOH A 52 352 108 HOH HOH . M 5 HOH A 53 353 19 HOH HOH . M 5 HOH A 54 354 42 HOH HOH . M 5 HOH A 55 355 235 HOH HOH . M 5 HOH A 56 356 12 HOH HOH . M 5 HOH A 57 357 142 HOH HOH . M 5 HOH A 58 358 74 HOH HOH . M 5 HOH A 59 359 98 HOH HOH . M 5 HOH A 60 360 252 HOH HOH . M 5 HOH A 61 361 53 HOH HOH . M 5 HOH A 62 362 234 HOH HOH . M 5 HOH A 63 363 57 HOH HOH . M 5 HOH A 64 364 210 HOH HOH . M 5 HOH A 65 365 15 HOH HOH . M 5 HOH A 66 366 96 HOH HOH . M 5 HOH A 67 367 3 HOH HOH . M 5 HOH A 68 368 13 HOH HOH . M 5 HOH A 69 369 155 HOH HOH . M 5 HOH A 70 370 115 HOH HOH . M 5 HOH A 71 371 23 HOH HOH . M 5 HOH A 72 372 4 HOH HOH . M 5 HOH A 73 373 457 HOH HOH . M 5 HOH A 74 374 326 HOH HOH . M 5 HOH A 75 375 7 HOH HOH . M 5 HOH A 76 376 21 HOH HOH . M 5 HOH A 77 377 413 HOH HOH . M 5 HOH A 78 378 62 HOH HOH . M 5 HOH A 79 379 139 HOH HOH . M 5 HOH A 80 380 35 HOH HOH . M 5 HOH A 81 381 161 HOH HOH . M 5 HOH A 82 382 170 HOH HOH . M 5 HOH A 83 383 312 HOH HOH . M 5 HOH A 84 384 303 HOH HOH . M 5 HOH A 85 385 193 HOH HOH . M 5 HOH A 86 386 416 HOH HOH . M 5 HOH A 87 387 158 HOH HOH . M 5 HOH A 88 388 187 HOH HOH . M 5 HOH A 89 389 285 HOH HOH . M 5 HOH A 90 390 146 HOH HOH . M 5 HOH A 91 391 283 HOH HOH . M 5 HOH A 92 392 34 HOH HOH . M 5 HOH A 93 393 421 HOH HOH . M 5 HOH A 94 394 1 HOH HOH . M 5 HOH A 95 395 262 HOH HOH . M 5 HOH A 96 396 196 HOH HOH . M 5 HOH A 97 397 292 HOH HOH . M 5 HOH A 98 398 222 HOH HOH . M 5 HOH A 99 399 229 HOH HOH . M 5 HOH A 100 400 206 HOH HOH . M 5 HOH A 101 401 268 HOH HOH . N 5 HOH B 1 301 217 HOH HOH . N 5 HOH B 2 302 313 HOH HOH . N 5 HOH B 3 303 263 HOH HOH . N 5 HOH B 4 304 105 HOH HOH . N 5 HOH B 5 305 215 HOH HOH . N 5 HOH B 6 306 249 HOH HOH . N 5 HOH B 7 307 172 HOH HOH . N 5 HOH B 8 308 241 HOH HOH . N 5 HOH B 9 309 298 HOH HOH . N 5 HOH B 10 310 395 HOH HOH . N 5 HOH B 11 311 178 HOH HOH . N 5 HOH B 12 312 189 HOH HOH . N 5 HOH B 13 313 6 HOH HOH . N 5 HOH B 14 314 64 HOH HOH . N 5 HOH B 15 315 22 HOH HOH . N 5 HOH B 16 316 97 HOH HOH . N 5 HOH B 17 317 30 HOH HOH . N 5 HOH B 18 318 127 HOH HOH . N 5 HOH B 19 319 80 HOH HOH . N 5 HOH B 20 320 269 HOH HOH . N 5 HOH B 21 321 157 HOH HOH . N 5 HOH B 22 322 427 HOH HOH . N 5 HOH B 23 323 306 HOH HOH . N 5 HOH B 24 324 6 HOH HOH . N 5 HOH B 25 325 78 HOH HOH . N 5 HOH B 26 326 194 HOH HOH . N 5 HOH B 27 327 2 HOH HOH . N 5 HOH B 28 328 121 HOH HOH . N 5 HOH B 29 329 66 HOH HOH . N 5 HOH B 30 330 400 HOH HOH . N 5 HOH B 31 331 102 HOH HOH . N 5 HOH B 32 332 25 HOH HOH . N 5 HOH B 33 333 68 HOH HOH . N 5 HOH B 34 334 33 HOH HOH . N 5 HOH B 35 335 168 HOH HOH . N 5 HOH B 36 336 242 HOH HOH . N 5 HOH B 37 337 111 HOH HOH . N 5 HOH B 38 338 94 HOH HOH . N 5 HOH B 39 339 61 HOH HOH . N 5 HOH B 40 340 120 HOH HOH . N 5 HOH B 41 341 8 HOH HOH . N 5 HOH B 42 342 17 HOH HOH . N 5 HOH B 43 343 182 HOH HOH . N 5 HOH B 44 344 154 HOH HOH . N 5 HOH B 45 345 36 HOH HOH . N 5 HOH B 46 346 106 HOH HOH . N 5 HOH B 47 347 271 HOH HOH . N 5 HOH B 48 348 4 HOH HOH . N 5 HOH B 49 349 388 HOH HOH . N 5 HOH B 50 350 133 HOH HOH . N 5 HOH B 51 351 79 HOH HOH . N 5 HOH B 52 352 69 HOH HOH . N 5 HOH B 53 353 273 HOH HOH . N 5 HOH B 54 354 195 HOH HOH . N 5 HOH B 55 355 128 HOH HOH . N 5 HOH B 56 356 198 HOH HOH . N 5 HOH B 57 357 208 HOH HOH . N 5 HOH B 58 358 144 HOH HOH . N 5 HOH B 59 359 338 HOH HOH . N 5 HOH B 60 360 82 HOH HOH . N 5 HOH B 61 361 52 HOH HOH . N 5 HOH B 62 362 60 HOH HOH . N 5 HOH B 63 363 253 HOH HOH . N 5 HOH B 64 364 70 HOH HOH . N 5 HOH B 65 365 26 HOH HOH . N 5 HOH B 66 366 16 HOH HOH . N 5 HOH B 67 367 73 HOH HOH . N 5 HOH B 68 368 237 HOH HOH . N 5 HOH B 69 369 14 HOH HOH . N 5 HOH B 70 370 92 HOH HOH . N 5 HOH B 71 371 36 HOH HOH . N 5 HOH B 72 372 47 HOH HOH . N 5 HOH B 73 373 302 HOH HOH . N 5 HOH B 74 374 11 HOH HOH . N 5 HOH B 75 375 35 HOH HOH . N 5 HOH B 76 376 50 HOH HOH . N 5 HOH B 77 377 212 HOH HOH . N 5 HOH B 78 378 32 HOH HOH . N 5 HOH B 79 379 116 HOH HOH . N 5 HOH B 80 380 280 HOH HOH . N 5 HOH B 81 381 91 HOH HOH . N 5 HOH B 82 382 113 HOH HOH . N 5 HOH B 83 383 24 HOH HOH . N 5 HOH B 84 384 223 HOH HOH . N 5 HOH B 85 385 136 HOH HOH . N 5 HOH B 86 386 247 HOH HOH . N 5 HOH B 87 387 414 HOH HOH . N 5 HOH B 88 388 309 HOH HOH . N 5 HOH B 89 389 209 HOH HOH . N 5 HOH B 90 390 272 HOH HOH . N 5 HOH B 91 391 378 HOH HOH . N 5 HOH B 92 392 56 HOH HOH . N 5 HOH B 93 393 145 HOH HOH . N 5 HOH B 94 394 232 HOH HOH . N 5 HOH B 95 395 418 HOH HOH . N 5 HOH B 96 396 202 HOH HOH . N 5 HOH B 97 397 20 HOH HOH . N 5 HOH B 98 398 153 HOH HOH . N 5 HOH B 99 399 30 HOH HOH . N 5 HOH B 100 400 171 HOH HOH . N 5 HOH B 101 401 211 HOH HOH . N 5 HOH B 102 402 132 HOH HOH . N 5 HOH B 103 403 23 HOH HOH . N 5 HOH B 104 404 221 HOH HOH . N 5 HOH B 105 405 426 HOH HOH . N 5 HOH B 106 406 420 HOH HOH . N 5 HOH B 107 407 428 HOH HOH . O 5 HOH C 1 301 347 HOH HOH . O 5 HOH C 2 302 282 HOH HOH . O 5 HOH C 3 303 48 HOH HOH . O 5 HOH C 4 304 258 HOH HOH . O 5 HOH C 5 305 117 HOH HOH . O 5 HOH C 6 306 169 HOH HOH . O 5 HOH C 7 307 126 HOH HOH . O 5 HOH C 8 308 173 HOH HOH . O 5 HOH C 9 309 20 HOH HOH . O 5 HOH C 10 310 151 HOH HOH . O 5 HOH C 11 311 123 HOH HOH . O 5 HOH C 12 312 406 HOH HOH . O 5 HOH C 13 313 37 HOH HOH . O 5 HOH C 14 314 27 HOH HOH . O 5 HOH C 15 315 12 HOH HOH . O 5 HOH C 16 316 367 HOH HOH . O 5 HOH C 17 317 148 HOH HOH . O 5 HOH C 18 318 46 HOH HOH . O 5 HOH C 19 319 320 HOH HOH . O 5 HOH C 20 320 288 HOH HOH . O 5 HOH C 21 321 140 HOH HOH . O 5 HOH C 22 322 72 HOH HOH . O 5 HOH C 23 323 88 HOH HOH . O 5 HOH C 24 324 104 HOH HOH . O 5 HOH C 25 325 86 HOH HOH . O 5 HOH C 26 326 21 HOH HOH . O 5 HOH C 27 327 119 HOH HOH . O 5 HOH C 28 328 89 HOH HOH . O 5 HOH C 29 329 67 HOH HOH . O 5 HOH C 30 330 77 HOH HOH . O 5 HOH C 31 331 1 HOH HOH . O 5 HOH C 32 332 179 HOH HOH . O 5 HOH C 33 333 118 HOH HOH . O 5 HOH C 34 334 219 HOH HOH . O 5 HOH C 35 335 156 HOH HOH . O 5 HOH C 36 336 83 HOH HOH . O 5 HOH C 37 337 109 HOH HOH . O 5 HOH C 38 338 385 HOH HOH . O 5 HOH C 39 339 63 HOH HOH . O 5 HOH C 40 340 267 HOH HOH . O 5 HOH C 41 341 39 HOH HOH . O 5 HOH C 42 342 5 HOH HOH . O 5 HOH C 43 343 40 HOH HOH . O 5 HOH C 44 344 190 HOH HOH . O 5 HOH C 45 345 149 HOH HOH . O 5 HOH C 46 346 44 HOH HOH . O 5 HOH C 47 347 230 HOH HOH . O 5 HOH C 48 348 425 HOH HOH . O 5 HOH C 49 349 65 HOH HOH . O 5 HOH C 50 350 277 HOH HOH . O 5 HOH C 51 351 125 HOH HOH . O 5 HOH C 52 352 58 HOH HOH . O 5 HOH C 53 353 203 HOH HOH . O 5 HOH C 54 354 26 HOH HOH . O 5 HOH C 55 355 207 HOH HOH . O 5 HOH C 56 356 181 HOH HOH . O 5 HOH C 57 357 238 HOH HOH . O 5 HOH C 58 358 71 HOH HOH . O 5 HOH C 59 359 163 HOH HOH . O 5 HOH C 60 360 87 HOH HOH . O 5 HOH C 61 361 31 HOH HOH . O 5 HOH C 62 362 307 HOH HOH . O 5 HOH C 63 363 55 HOH HOH . O 5 HOH C 64 364 43 HOH HOH . O 5 HOH C 65 365 99 HOH HOH . O 5 HOH C 66 366 174 HOH HOH . O 5 HOH C 67 367 147 HOH HOH . O 5 HOH C 68 368 19 HOH HOH . O 5 HOH C 69 369 24 HOH HOH . O 5 HOH C 70 370 5 HOH HOH . O 5 HOH C 71 371 10 HOH HOH . O 5 HOH C 72 372 335 HOH HOH . O 5 HOH C 73 373 296 HOH HOH . O 5 HOH C 74 374 107 HOH HOH . O 5 HOH C 75 375 160 HOH HOH . O 5 HOH C 76 376 220 HOH HOH . O 5 HOH C 77 377 417 HOH HOH . O 5 HOH C 78 378 266 HOH HOH . O 5 HOH C 79 379 197 HOH HOH . O 5 HOH C 80 380 349 HOH HOH . O 5 HOH C 81 381 143 HOH HOH . O 5 HOH C 82 382 135 HOH HOH . O 5 HOH C 83 383 176 HOH HOH . O 5 HOH C 84 384 33 HOH HOH . O 5 HOH C 85 385 216 HOH HOH . O 5 HOH C 86 386 138 HOH HOH . O 5 HOH C 87 387 431 HOH HOH . O 5 HOH C 88 388 85 HOH HOH . O 5 HOH C 89 389 239 HOH HOH . O 5 HOH C 90 390 124 HOH HOH . O 5 HOH C 91 391 419 HOH HOH . O 5 HOH C 92 392 18 HOH HOH . O 5 HOH C 93 393 370 HOH HOH . O 5 HOH C 94 394 166 HOH HOH . O 5 HOH C 95 395 336 HOH HOH . O 5 HOH C 96 396 15 HOH HOH . O 5 HOH C 97 397 225 HOH HOH . O 5 HOH C 98 398 17 HOH HOH . O 5 HOH C 99 399 245 HOH HOH . O 5 HOH C 100 400 300 HOH HOH . O 5 HOH C 101 401 233 HOH HOH . O 5 HOH C 102 402 25 HOH HOH . O 5 HOH C 103 403 205 HOH HOH . O 5 HOH C 104 404 257 HOH HOH . O 5 HOH C 105 405 137 HOH HOH . O 5 HOH C 106 406 330 HOH HOH . O 5 HOH C 107 407 186 HOH HOH . O 5 HOH C 108 408 430 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 4 18.167 36.046 17.002 1 18.23 ? C1 GOL 203 C 1 HETATM 2 O O1 GOL . . . L 4 18.378 34.637 17.028 1 15.8 ? O1 GOL 203 C 1 HETATM 3 C C2 GOL . . . L 4 17.271 36.372 15.799 1 20.94 ? C2 GOL 203 C 1 HETATM 4 O O2 GOL . . . L 4 17.838 35.759 14.625 1 23.25 ? O2 GOL 203 C 1 HETATM 5 C C3 GOL . . . L 4 15.929 35.723 16.119 1 22.87 ? C3 GOL 203 C 1 HETATM 6 O O3 GOL . . . L 4 15.043 35.921 14.956 1 28.6 ? O3 GOL 203 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 474 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #