data_6OYU # _model_server_result.job_id Z1IBeBayPq8diUysiWGqDQ _model_server_result.datetime_utc '2024-11-29 07:30:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":604}' # _entry.id 6OYU # _exptl.entry_id 6OYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.297 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OYU _cell.length_a 164.641 _cell.length_b 164.641 _cell.length_c 96.301 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,S 1 1 B,J,K,L,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 432 A CYS 470 1_555 G FE HEM . A HEM 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc2 B SG CYS 432 B CYS 470 1_555 N FE HEM . B HEM 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? # _chem_comp.formula 'C19 H12 O2' _chem_comp.formula_weight 272.297 _chem_comp.id BHF _chem_comp.mon_nstd_flag . _chem_comp.name 2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,8-BENZOFLAVONE;ALPHA-NAPHTHOFLAVONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 BHF sing 70 n y C8 C7 BHF doub 71 n y C8 H8 BHF sing 72 n n C9 O2 BHF doub 73 n n C9 C10 BHF sing 74 n y C10 C11 BHF sing 75 n y C10 C19 BHF doub 76 n y C11 C12 BHF doub 77 n y C11 H11 BHF sing 78 n n C12 C13 BHF sing 79 n y C12 H12 BHF sing 80 n n C13 C14 BHF doub 81 n y C13 C18 BHF sing 82 n y C14 C15 BHF sing 83 n y C14 H14 BHF sing 84 n n C15 C16 BHF doub 85 n y C15 H15 BHF sing 86 n n C16 C17 BHF sing 87 n y C16 H16 BHF sing 88 n n C17 C18 BHF doub 89 n y C17 H17 BHF sing 90 n n C18 C19 BHF sing 91 n y C19 O1 BHF sing 92 n y O1 C7 BHF sing 93 n y C7 C1 BHF sing 94 n y C1 C2 BHF doub 95 n y C1 C6 BHF sing 96 n y C2 C3 BHF sing 97 n y C2 H2 BHF sing 98 n n C3 C4 BHF doub 99 n y C3 H3 BHF sing 100 n n C4 C5 BHF sing 101 n y C4 H4 BHF sing 102 n n C5 C6 BHF doub 103 n y C5 H5 BHF sing 104 n n C6 H6 BHF sing 105 n n # _atom_sites.entry_id 6OYU _atom_sites.fract_transf_matrix[1][1] 0.006074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BHF A 1 601 602 BHF BHF . D 2 BHF A 1 602 603 BHF BHF . E 2 BHF A 1 603 604 BHF BHF . F 2 BHF A 1 604 605 BHF BHF . G 3 HEM A 1 605 601 HEM HEM . H 4 GOL A 1 606 3 GOL GOL . I 4 GOL A 1 607 4 GOL GOL . J 2 BHF B 1 601 602 BHF BHF . K 2 BHF B 1 602 603 BHF BHF . L 2 BHF B 1 603 604 BHF BHF . M 2 BHF B 1 604 605 BHF BHF . N 3 HEM B 1 605 601 HEM HEM . O 4 GOL B 1 606 1 GOL GOL . P 4 GOL B 1 607 2 GOL GOL . Q 4 GOL B 1 608 6 GOL GOL . R 4 GOL B 1 609 7 GOL GOL . S 5 HOH A 1 701 17 HOH HOH . S 5 HOH A 2 702 1 HOH HOH . S 5 HOH A 3 703 10 HOH HOH . S 5 HOH A 4 704 36 HOH HOH . S 5 HOH A 5 705 20 HOH HOH . S 5 HOH A 6 706 14 HOH HOH . S 5 HOH A 7 707 18 HOH HOH . S 5 HOH A 8 708 8 HOH HOH . S 5 HOH A 9 709 32 HOH HOH . S 5 HOH A 10 710 15 HOH HOH . S 5 HOH A 11 711 4 HOH HOH . S 5 HOH A 12 712 7 HOH HOH . S 5 HOH A 13 713 33 HOH HOH . S 5 HOH A 14 714 12 HOH HOH . S 5 HOH A 15 715 13 HOH HOH . S 5 HOH A 16 716 38 HOH HOH . S 5 HOH A 17 717 16 HOH HOH . S 5 HOH A 18 718 19 HOH HOH . S 5 HOH A 19 719 28 HOH HOH . S 5 HOH A 20 720 37 HOH HOH . T 5 HOH B 1 701 30 HOH HOH . T 5 HOH B 2 702 40 HOH HOH . T 5 HOH B 3 703 2 HOH HOH . T 5 HOH B 4 704 3 HOH HOH . T 5 HOH B 5 705 9 HOH HOH . T 5 HOH B 6 706 21 HOH HOH . T 5 HOH B 7 707 25 HOH HOH . T 5 HOH B 8 708 24 HOH HOH . T 5 HOH B 9 709 26 HOH HOH . T 5 HOH B 10 710 5 HOH HOH . T 5 HOH B 11 711 6 HOH HOH . T 5 HOH B 12 712 27 HOH HOH . T 5 HOH B 13 713 11 HOH HOH . T 5 HOH B 14 714 44 HOH HOH . T 5 HOH B 15 715 35 HOH HOH . T 5 HOH B 16 716 31 HOH HOH . T 5 HOH B 17 717 39 HOH HOH . T 5 HOH B 18 718 34 HOH HOH . T 5 HOH B 19 719 41 HOH HOH . T 5 HOH B 20 720 22 HOH HOH . T 5 HOH B 21 721 23 HOH HOH . T 5 HOH B 22 722 42 HOH HOH . T 5 HOH B 23 723 43 HOH HOH . T 5 HOH B 24 724 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 BHF . . . M 2 -19.269 -43.313 -113.994 1 53 ? C8 BHF 604 B 1 HETATM 2 C C9 BHF . . . M 2 -20.572 -42.855 -114.461 1 52.28 ? C9 BHF 604 B 1 HETATM 3 O O2 BHF . . . M 2 -21.191 -43.407 -115.355 1 56.08 ? O2 BHF 604 B 1 HETATM 4 C C10 BHF . . . M 2 -21.061 -41.68 -113.753 1 53.42 ? C10 BHF 604 B 1 HETATM 5 C C11 BHF . . . M 2 -22.338 -41.152 -114.068 1 57.05 ? C11 BHF 604 B 1 HETATM 6 C C12 BHF . . . M 2 -22.806 -40.058 -113.414 1 52.95 ? C12 BHF 604 B 1 HETATM 7 C C13 BHF . . . M 2 -22.018 -39.436 -112.409 1 45.29 ? C13 BHF 604 B 1 HETATM 8 C C14 BHF . . . M 2 -22.511 -38.303 -111.737 1 46.94 ? C14 BHF 604 B 1 HETATM 9 C C15 BHF . . . M 2 -21.75 -37.706 -110.772 1 55.07 ? C15 BHF 604 B 1 HETATM 10 C C16 BHF . . . M 2 -20.472 -38.21 -110.441 1 49.82 ? C16 BHF 604 B 1 HETATM 11 C C17 BHF . . . M 2 -19.973 -39.308 -111.079 1 47.57 ? C17 BHF 604 B 1 HETATM 12 C C18 BHF . . . M 2 -20.752 -39.936 -112.079 1 46.41 ? C18 BHF 604 B 1 HETATM 13 C C19 BHF . . . M 2 -20.292 -41.081 -112.781 1 52.32 ? C19 BHF 604 B 1 HETATM 14 O O1 BHF . . . M 2 -19.054 -41.527 -112.421 1 55.97 ? O1 BHF 604 B 1 HETATM 15 C C7 BHF . . . M 2 -18.594 -42.646 -113.041 1 52.23 ? C7 BHF 604 B 1 HETATM 16 C C1 BHF . . . M 2 -17.2 -42.936 -112.746 1 46.77 ? C1 BHF 604 B 1 HETATM 17 C C2 BHF . . . M 2 -16.371 -41.982 -112.175 1 46.76 ? C2 BHF 604 B 1 HETATM 18 C C3 BHF . . . M 2 -15.049 -42.313 -111.914 1 57 ? C3 BHF 604 B 1 HETATM 19 C C4 BHF . . . M 2 -14.569 -43.579 -112.219 1 62.51 ? C4 BHF 604 B 1 HETATM 20 C C5 BHF . . . M 2 -15.406 -44.53 -112.791 1 58.98 ? C5 BHF 604 B 1 HETATM 21 C C6 BHF . . . M 2 -16.724 -44.211 -113.057 1 54.59 ? C6 BHF 604 B 1 HETATM 22 H H8 BHF . . . M 2 -18.921 -44.085 -114.38 1 63.87 ? H8 BHF 604 B 1 HETATM 23 H H11 BHF . . . M 2 -22.838 -41.575 -114.729 1 68.73 ? H11 BHF 604 B 1 HETATM 24 H H12 BHF . . . M 2 -23.644 -39.708 -113.619 1 63.82 ? H12 BHF 604 B 1 HETATM 25 H H14 BHF . . . M 2 -23.352 -37.973 -111.959 1 56.6 ? H14 BHF 604 B 1 HETATM 26 H H15 BHF . . . M 2 -22.07 -36.957 -110.323 1 66.36 ? H15 BHF 604 B 1 HETATM 27 H H16 BHF . . . M 2 -19.971 -37.786 -109.782 1 60.05 ? H16 BHF 604 B 1 HETATM 28 H H17 BHF . . . M 2 -19.133 -39.643 -110.863 1 57.36 ? H17 BHF 604 B 1 HETATM 29 H H2 BHF . . . M 2 -16.696 -41.135 -111.971 1 56.39 ? H2 BHF 604 B 1 HETATM 30 H H3 BHF . . . M 2 -14.486 -41.68 -111.532 1 68.67 ? H3 BHF 604 B 1 HETATM 31 H H4 BHF . . . M 2 -13.682 -43.796 -112.041 1 75.28 ? H4 BHF 604 B 1 HETATM 32 H H5 BHF . . . M 2 -15.086 -45.379 -112.995 1 71.05 ? H5 BHF 604 B 1 HETATM 33 H H6 BHF . . . M 2 -17.284 -44.848 -113.44 1 65.78 ? H6 BHF 604 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #