data_6OYU # _model_server_result.job_id AqdD1LAX4886e3hfgkcuWQ _model_server_result.datetime_utc '2024-10-17 04:37:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":605}' # _entry.id 6OYU # _exptl.entry_id 6OYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OYU _cell.length_a 164.641 _cell.length_b 164.641 _cell.length_c 96.301 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,S 1 1 B,J,K,L,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 432 A CYS 470 1_555 G FE HEM . A HEM 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc2 B SG CYS 432 B CYS 470 1_555 N FE HEM . B HEM 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 178 n n CHA C4D HEM doub 179 n n CHA HHA HEM sing 180 n n CHB C4A HEM sing 181 n n CHB C1B HEM doub 182 n n CHB HHB HEM sing 183 n n CHC C4B HEM sing 184 n n CHC C1C HEM doub 185 n n CHC HHC HEM sing 186 n n CHD C4C HEM doub 187 n n CHD C1D HEM sing 188 n n CHD HHD HEM sing 189 n n C1A C2A HEM doub 190 n y C1A NA HEM sing 191 n y C2A C3A HEM sing 192 n y C2A CAA HEM sing 193 n n C3A C4A HEM doub 194 n y C3A CMA HEM sing 195 n n C4A NA HEM sing 196 n y CMA HMA HEM sing 197 n n CMA HMAA HEM sing 198 n n CMA HMAB HEM sing 199 n n CAA CBA HEM sing 200 n n CAA HAA HEM sing 201 n n CAA HAAA HEM sing 202 n n CBA CGA HEM sing 203 n n CBA HBA HEM sing 204 n n CBA HBAA HEM sing 205 n n CGA O1A HEM doub 206 n n CGA O2A HEM sing 207 n n C1B C2B HEM sing 208 n n C1B NB HEM sing 209 n n C2B C3B HEM doub 210 n n C2B CMB HEM sing 211 n n C3B C4B HEM sing 212 n n C3B CAB HEM sing 213 n n C4B NB HEM doub 214 n n CMB HMB HEM sing 215 n n CMB HMBA HEM sing 216 n n CMB HMBB HEM sing 217 n n CAB CBB HEM doub 218 n n CAB HAB HEM sing 219 n n CBB HBB HEM sing 220 n n CBB HBBA HEM sing 221 n n C1C C2C HEM sing 222 n y C1C NC HEM sing 223 n y C2C C3C HEM doub 224 n y C2C CMC HEM sing 225 n n C3C C4C HEM sing 226 n y C3C CAC HEM sing 227 n n C4C NC HEM sing 228 n y CMC HMC HEM sing 229 n n CMC HMCA HEM sing 230 n n CMC HMCB HEM sing 231 n n CAC CBC HEM doub 232 n n CAC HAC HEM sing 233 n n CBC HBC HEM sing 234 n n CBC HBCA HEM sing 235 n n C1D C2D HEM sing 236 n n C1D ND HEM doub 237 n n C2D C3D HEM doub 238 n n C2D CMD HEM sing 239 n n C3D C4D HEM sing 240 n n C3D CAD HEM sing 241 n n C4D ND HEM sing 242 n n CMD HMD HEM sing 243 n n CMD HMDA HEM sing 244 n n CMD HMDB HEM sing 245 n n CAD CBD HEM sing 246 n n CAD HAD HEM sing 247 n n CAD HADA HEM sing 248 n n CBD CGD HEM sing 249 n n CBD HBD HEM sing 250 n n CBD HBDA HEM sing 251 n n CGD O1D HEM doub 252 n n CGD O2D HEM sing 253 n n O2A H2A HEM sing 254 n n O2D H2D HEM sing 255 n n FE NA HEM sing 256 n n FE NB HEM sing 257 n n FE NC HEM sing 258 n n FE ND HEM sing 259 n n # _atom_sites.entry_id 6OYU _atom_sites.fract_transf_matrix[1][1] 0.006074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BHF A 1 601 602 BHF BHF . D 2 BHF A 1 602 603 BHF BHF . E 2 BHF A 1 603 604 BHF BHF . F 2 BHF A 1 604 605 BHF BHF . G 3 HEM A 1 605 601 HEM HEM . H 4 GOL A 1 606 3 GOL GOL . I 4 GOL A 1 607 4 GOL GOL . J 2 BHF B 1 601 602 BHF BHF . K 2 BHF B 1 602 603 BHF BHF . L 2 BHF B 1 603 604 BHF BHF . M 2 BHF B 1 604 605 BHF BHF . N 3 HEM B 1 605 601 HEM HEM . O 4 GOL B 1 606 1 GOL GOL . P 4 GOL B 1 607 2 GOL GOL . Q 4 GOL B 1 608 6 GOL GOL . R 4 GOL B 1 609 7 GOL GOL . S 5 HOH A 1 701 17 HOH HOH . S 5 HOH A 2 702 1 HOH HOH . S 5 HOH A 3 703 10 HOH HOH . S 5 HOH A 4 704 36 HOH HOH . S 5 HOH A 5 705 20 HOH HOH . S 5 HOH A 6 706 14 HOH HOH . S 5 HOH A 7 707 18 HOH HOH . S 5 HOH A 8 708 8 HOH HOH . S 5 HOH A 9 709 32 HOH HOH . S 5 HOH A 10 710 15 HOH HOH . S 5 HOH A 11 711 4 HOH HOH . S 5 HOH A 12 712 7 HOH HOH . S 5 HOH A 13 713 33 HOH HOH . S 5 HOH A 14 714 12 HOH HOH . S 5 HOH A 15 715 13 HOH HOH . S 5 HOH A 16 716 38 HOH HOH . S 5 HOH A 17 717 16 HOH HOH . S 5 HOH A 18 718 19 HOH HOH . S 5 HOH A 19 719 28 HOH HOH . S 5 HOH A 20 720 37 HOH HOH . T 5 HOH B 1 701 30 HOH HOH . T 5 HOH B 2 702 40 HOH HOH . T 5 HOH B 3 703 2 HOH HOH . T 5 HOH B 4 704 3 HOH HOH . T 5 HOH B 5 705 9 HOH HOH . T 5 HOH B 6 706 21 HOH HOH . T 5 HOH B 7 707 25 HOH HOH . T 5 HOH B 8 708 24 HOH HOH . T 5 HOH B 9 709 26 HOH HOH . T 5 HOH B 10 710 5 HOH HOH . T 5 HOH B 11 711 6 HOH HOH . T 5 HOH B 12 712 27 HOH HOH . T 5 HOH B 13 713 11 HOH HOH . T 5 HOH B 14 714 44 HOH HOH . T 5 HOH B 15 715 35 HOH HOH . T 5 HOH B 16 716 31 HOH HOH . T 5 HOH B 17 717 39 HOH HOH . T 5 HOH B 18 718 34 HOH HOH . T 5 HOH B 19 719 41 HOH HOH . T 5 HOH B 20 720 22 HOH HOH . T 5 HOH B 21 721 23 HOH HOH . T 5 HOH B 22 722 42 HOH HOH . T 5 HOH B 23 723 43 HOH HOH . T 5 HOH B 24 724 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 3 -8.135 -42.757 -49.267 1 24.93 ? CHA HEM 605 A 1 HETATM 2 C CHB HEM . . . G 3 -3.356 -43.179 -48.613 1 37.34 ? CHB HEM 605 A 1 HETATM 3 C CHC HEM . . . G 3 -2.701 -38.819 -50.645 1 31.71 ? CHC HEM 605 A 1 HETATM 4 C CHD HEM . . . G 3 -7.409 -38.636 -51.696 1 34.73 ? CHD HEM 605 A 1 HETATM 5 C C1A HEM . . . G 3 -6.913 -43.227 -48.852 1 30.27 ? C1A HEM 605 A 1 HETATM 6 C C2A HEM . . . G 3 -6.675 -44.405 -48.044 1 36.89 ? C2A HEM 605 A 1 HETATM 7 C C3A HEM . . . G 3 -5.359 -44.524 -47.863 1 31.18 ? C3A HEM 605 A 1 HETATM 8 C C4A HEM . . . G 3 -4.709 -43.426 -48.551 1 28.57 ? C4A HEM 605 A 1 HETATM 9 C CMA HEM . . . G 3 -4.651 -45.634 -47.058 1 30.27 ? CMA HEM 605 A 1 HETATM 10 C CAA HEM . . . G 3 -7.76 -45.345 -47.48 1 35.32 ? CAA HEM 605 A 1 HETATM 11 C CBA HEM . . . G 3 -8.096 -46.434 -48.487 1 42 ? CBA HEM 605 A 1 HETATM 12 C CGA HEM . . . G 3 -8.993 -47.458 -47.836 1 43.13 ? CGA HEM 605 A 1 HETATM 13 O O1A HEM . . . G 3 -9.05 -48.606 -48.346 1 44.87 ? O1A HEM 605 A 1 HETATM 14 O O2A HEM . . . G 3 -9.643 -47.141 -46.805 1 40.03 ? O2A HEM 605 A 1 HETATM 15 C C1B HEM . . . G 3 -2.757 -42.049 -49.129 1 30.17 ? C1B HEM 605 A 1 HETATM 16 C C2B HEM . . . G 3 -1.334 -41.801 -49.205 1 26.46 ? C2B HEM 605 A 1 HETATM 17 C C3B HEM . . . G 3 -1.149 -40.594 -49.764 1 32.71 ? C3B HEM 605 A 1 HETATM 18 C C4B HEM . . . G 3 -2.453 -40.041 -50.062 1 31.92 ? C4B HEM 605 A 1 HETATM 19 C CMB HEM . . . G 3 -0.266 -42.796 -48.708 1 30.12 ? CMB HEM 605 A 1 HETATM 20 C CAB HEM . . . G 3 0.173 -39.857 -50.084 1 34.6 ? CAB HEM 605 A 1 HETATM 21 C CBB HEM . . . G 3 1.363 -40.455 -49.97 1 42.73 ? CBB HEM 605 A 1 HETATM 22 C C1C HEM . . . G 3 -3.901 -38.429 -51.184 1 26.85 ? C1C HEM 605 A 1 HETATM 23 C C2C HEM . . . G 3 -4.121 -37.325 -52.098 1 32.68 ? C2C HEM 605 A 1 HETATM 24 C C3C HEM . . . G 3 -5.432 -37.278 -52.375 1 39.48 ? C3C HEM 605 A 1 HETATM 25 C C4C HEM . . . G 3 -6.068 -38.357 -51.659 1 32.91 ? C4C HEM 605 A 1 HETATM 26 C CMC HEM . . . G 3 -3.014 -36.383 -52.619 1 31.99 ? CMC HEM 605 A 1 HETATM 27 C CAC HEM . . . G 3 -6.21 -36.317 -53.304 1 25.81 ? CAC HEM 605 A 1 HETATM 28 C CBC HEM . . . G 3 -5.584 -35.584 -54.227 1 39.27 ? CBC HEM 605 A 1 HETATM 29 C C1D HEM . . . G 3 -8.017 -39.698 -51.079 1 31.77 ? C1D HEM 605 A 1 HETATM 30 C C2D HEM . . . G 3 -9.441 -39.906 -50.988 1 31.74 ? C2D HEM 605 A 1 HETATM 31 C C3D HEM . . . G 3 -9.64 -41.039 -50.32 1 30.75 ? C3D HEM 605 A 1 HETATM 32 C C4D HEM . . . G 3 -8.35 -41.595 -49.967 1 24.82 ? C4D HEM 605 A 1 HETATM 33 C CMD HEM . . . G 3 -10.531 -38.974 -51.558 1 39.52 ? CMD HEM 605 A 1 HETATM 34 C CAD HEM . . . G 3 -11.009 -41.663 -49.986 1 27.59 ? CAD HEM 605 A 1 HETATM 35 C CBD HEM . . . G 3 -11.383 -42.617 -51.115 1 28.79 ? CBD HEM 605 A 1 HETATM 36 C CGD HEM . . . G 3 -12.506 -43.522 -50.686 1 26.29 ? CGD HEM 605 A 1 HETATM 37 O O1D HEM . . . G 3 -13.232 -44.025 -51.583 1 27.67 ? O1D HEM 605 A 1 HETATM 38 O O2D HEM . . . G 3 -12.681 -43.733 -49.456 1 27.23 ? O2D HEM 605 A 1 HETATM 39 N NA HEM . . . G 3 -5.69 -42.655 -49.139 1 32.25 ? NA HEM 605 A 1 HETATM 40 N NB HEM . . . G 3 -3.408 -40.955 -49.661 1 29 ? NB HEM 605 A 1 HETATM 41 N NC HEM . . . G 3 -5.111 -39.041 -50.938 1 26.14 ? NC HEM 605 A 1 HETATM 42 N ND HEM . . . G 3 -7.376 -40.749 -50.449 1 29.79 ? ND HEM 605 A 1 HETATM 43 FE FE HEM . . . G 3 -5.342 -40.932 -50.113 1 35.11 ? FE HEM 605 A 1 HETATM 44 H HHB HEM . . . G 3 -2.761 -43.872 -48.257 1 45.08 ? HHB HEM 605 A 1 HETATM 45 H HHC HEM . . . G 3 -1.961 -38.176 -50.677 1 38.32 ? HHC HEM 605 A 1 HETATM 46 H HHD HEM . . . G 3 -7.981 -38.025 -52.206 1 41.95 ? HHD HEM 605 A 1 HETATM 47 H HMA HEM . . . G 3 -3.681 -45.507 -47.108 1 36.6 ? HMA HEM 605 A 1 HETATM 48 H HMAA HEM . . . G 3 -4.885 -46.509 -47.432 1 36.6 ? HMAA HEM 605 A 1 HETATM 49 H HMAB HEM . . . G 3 -4.938 -45.592 -46.122 1 36.6 ? HMAB HEM 605 A 1 HETATM 50 H HAA HEM . . . G 3 -8.559 -44.83 -47.287 1 42.65 ? HAA HEM 605 A 1 HETATM 51 H HAAA HEM . . . G 3 -7.434 -45.755 -46.663 1 42.65 ? HAAA HEM 605 A 1 HETATM 52 H HBA HEM . . . G 3 -7.279 -46.863 -48.785 1 50.67 ? HBA HEM 605 A 1 HETATM 53 H HBAA HEM . . . G 3 -8.553 -46.042 -49.248 1 50.67 ? HBAA HEM 605 A 1 HETATM 54 H HMB HEM . . . G 3 -0.665 -43.408 -48.07 1 36.42 ? HMB HEM 605 A 1 HETATM 55 H HMBA HEM . . . G 3 0.456 -42.309 -48.28 1 36.42 ? HMBA HEM 605 A 1 HETATM 56 H HMBB HEM . . . G 3 0.085 -43.297 -49.46 1 36.42 ? HMBB HEM 605 A 1 HETATM 57 H HAB HEM . . . G 3 0.138 -38.942 -50.373 1 41.79 ? HAB HEM 605 A 1 HETATM 58 H HBB HEM . . . G 3 2.174 -39.966 -50.178 1 51.55 ? HBB HEM 605 A 1 HETATM 59 H HBBA HEM . . . G 3 1.416 -41.379 -49.679 1 51.55 ? HBBA HEM 605 A 1 HETATM 60 H HMC HEM . . . G 3 -2.297 -36.334 -51.968 1 38.66 ? HMC HEM 605 A 1 HETATM 61 H HMCA HEM . . . G 3 -3.382 -35.497 -52.76 1 38.66 ? HMCA HEM 605 A 1 HETATM 62 H HMCB HEM . . . G 3 -2.666 -36.725 -53.458 1 38.66 ? HMCB HEM 605 A 1 HETATM 63 H HAC HEM . . . G 3 -7.163 -36.246 -53.214 1 31.24 ? HAC HEM 605 A 1 HETATM 64 H HBC HEM . . . G 3 -6.092 -34.987 -54.799 1 47.39 ? HBC HEM 605 A 1 HETATM 65 H HBCA HEM . . . G 3 -4.621 -35.647 -54.326 1 47.39 ? HBCA HEM 605 A 1 HETATM 66 H HMD HEM . . . G 3 -11.35 -39.488 -51.717 1 47.7 ? HMD HEM 605 A 1 HETATM 67 H HMDA HEM . . . G 3 -10.22 -38.585 -52.402 1 47.7 ? HMDA HEM 605 A 1 HETATM 68 H HMDB HEM . . . G 3 -10.715 -38.257 -50.916 1 47.7 ? HMDB HEM 605 A 1 HETATM 69 H HAD HEM . . . G 3 -11.679 -40.965 -49.911 1 33.38 ? HAD HEM 605 A 1 HETATM 70 H HADA HEM . . . G 3 -10.953 -42.15 -49.149 1 33.38 ? HADA HEM 605 A 1 HETATM 71 H HBD HEM . . . G 3 -10.611 -43.156 -51.348 1 34.82 ? HBD HEM 605 A 1 HETATM 72 H HBDA HEM . . . G 3 -11.664 -42.103 -51.888 1 34.82 ? HBDA HEM 605 A 1 HETATM 73 H HHA HEM . . . G 3 -8.921 -43.298 -49.046 1 30.18 ? HHA HEM 605 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 73 #