data_6OYU
#
_model_server_result.job_id            oTHlXMI8oAJD-m09MmQtZw 
_model_server_result.datetime_utc      '2024-11-25 17:50:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oyu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":606}' 
#
_entry.id    6OYU 
#
_exptl.entry_id    6OYU 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OYU 
_cell.length_a            164.641 
_cell.length_b            164.641 
_cell.length_c            96.301 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,S 1 1 
B,J,K,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 432 A CYS 470 1_555 G FE HEM . A HEM 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
metalc ? metalc2 B SG CYS 432 B CYS 470 1_555 N FE HEM . B HEM 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 165 n n 
C1 C2 GOL sing 166 n n 
C1 H11 GOL sing 167 n n 
C1 H12 GOL sing 168 n n 
O1 HO1 GOL sing 169 n n 
C2 O2 GOL sing 170 n n 
C2 C3 GOL sing 171 n n 
C2 H2 GOL sing 172 n n 
O2 HO2 GOL sing 173 n n 
C3 O3 GOL sing 174 n n 
C3 H31 GOL sing 175 n n 
C3 H32 GOL sing 176 n n 
O3 HO3 GOL sing 177 n n 
#
_atom_sites.entry_id                     6OYU 
_atom_sites.fract_transf_matrix[1][1]    0.006074 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006074 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010384 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BHF A 1 601 602 BHF BHF . 
D 2 BHF A 1 602 603 BHF BHF . 
E 2 BHF A 1 603 604 BHF BHF . 
F 2 BHF A 1 604 605 BHF BHF . 
G 3 HEM A 1 605 601 HEM HEM . 
H 4 GOL A 1 606 3 GOL GOL . 
I 4 GOL A 1 607 4 GOL GOL . 
J 2 BHF B 1 601 602 BHF BHF . 
K 2 BHF B 1 602 603 BHF BHF . 
L 2 BHF B 1 603 604 BHF BHF . 
M 2 BHF B 1 604 605 BHF BHF . 
N 3 HEM B 1 605 601 HEM HEM . 
O 4 GOL B 1 606 1 GOL GOL . 
P 4 GOL B 1 607 2 GOL GOL . 
Q 4 GOL B 1 608 6 GOL GOL . 
R 4 GOL B 1 609 7 GOL GOL . 
S 5 HOH A 1 701 17 HOH HOH . 
S 5 HOH A 2 702 1 HOH HOH . 
S 5 HOH A 3 703 10 HOH HOH . 
S 5 HOH A 4 704 36 HOH HOH . 
S 5 HOH A 5 705 20 HOH HOH . 
S 5 HOH A 6 706 14 HOH HOH . 
S 5 HOH A 7 707 18 HOH HOH . 
S 5 HOH A 8 708 8 HOH HOH . 
S 5 HOH A 9 709 32 HOH HOH . 
S 5 HOH A 10 710 15 HOH HOH . 
S 5 HOH A 11 711 4 HOH HOH . 
S 5 HOH A 12 712 7 HOH HOH . 
S 5 HOH A 13 713 33 HOH HOH . 
S 5 HOH A 14 714 12 HOH HOH . 
S 5 HOH A 15 715 13 HOH HOH . 
S 5 HOH A 16 716 38 HOH HOH . 
S 5 HOH A 17 717 16 HOH HOH . 
S 5 HOH A 18 718 19 HOH HOH . 
S 5 HOH A 19 719 28 HOH HOH . 
S 5 HOH A 20 720 37 HOH HOH . 
T 5 HOH B 1 701 30 HOH HOH . 
T 5 HOH B 2 702 40 HOH HOH . 
T 5 HOH B 3 703 2 HOH HOH . 
T 5 HOH B 4 704 3 HOH HOH . 
T 5 HOH B 5 705 9 HOH HOH . 
T 5 HOH B 6 706 21 HOH HOH . 
T 5 HOH B 7 707 25 HOH HOH . 
T 5 HOH B 8 708 24 HOH HOH . 
T 5 HOH B 9 709 26 HOH HOH . 
T 5 HOH B 10 710 5 HOH HOH . 
T 5 HOH B 11 711 6 HOH HOH . 
T 5 HOH B 12 712 27 HOH HOH . 
T 5 HOH B 13 713 11 HOH HOH . 
T 5 HOH B 14 714 44 HOH HOH . 
T 5 HOH B 15 715 35 HOH HOH . 
T 5 HOH B 16 716 31 HOH HOH . 
T 5 HOH B 17 717 39 HOH HOH . 
T 5 HOH B 18 718 34 HOH HOH . 
T 5 HOH B 19 719 41 HOH HOH . 
T 5 HOH B 20 720 22 HOH HOH . 
T 5 HOH B 21 721 23 HOH HOH . 
T 5 HOH B 22 722 42 HOH HOH . 
T 5 HOH B 23 723 43 HOH HOH . 
T 5 HOH B 24 724 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 -0.908 -45.206 -37.127 1 46.32 ? C1 GOL 606 A 1 
HETATM 2 O O1 GOL . . . H 4 -2.067 -45.941 -36.863 1 51.94 ? O1 GOL 606 A 1 
HETATM 3 C C2 GOL . . . H 4 -0.042 -45.252 -35.857 1 49.68 ? C2 GOL 606 A 1 
HETATM 4 O O2 GOL . . . H 4 1.161 -44.569 -36.032 1 44.29 ? O2 GOL 606 A 1 
HETATM 5 C C3 GOL . . . H 4 0.185 -46.748 -35.565 1 47.21 ? C3 GOL 606 A 1 
HETATM 6 O O3 GOL . . . H 4 -0.984 -47.42 -35.935 1 55.99 ? O3 GOL 606 A 1 
HETATM 7 H H11 GOL . . . H 4 -0.401 -45.563 -37.873 1 55.86 ? H11 GOL 606 A 1 
HETATM 8 H H12 GOL . . . H 4 -1.096 -44.282 -37.352 1 55.86 ? H12 GOL 606 A 1 
HETATM 9 H H2 GOL . . . H 4 -0.502 -44.824 -35.118 1 59.89 ? H2 GOL 606 A 1 
HETATM 10 H HO2 GOL . . . H 4 1.218 -44.343 -36.851 1 53.41 ? HO2 GOL 606 A 1 
HETATM 11 H H31 GOL . . . H 4 0.407 -46.854 -34.626 1 56.93 ? H31 GOL 606 A 1 
HETATM 12 H H32 GOL . . . H 4 0.97 -47.047 -36.05 1 56.93 ? H32 GOL 606 A 1 
HETATM 13 H HO3 GOL . . . H 4 -1.497 -47.403 -35.253 1 67.46 ? HO3 GOL 606 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           13 
#