data_6OYV # _model_server_result.job_id qkwt8pUrY8oHTLLYVfttkg _model_server_result.datetime_utc '2024-11-25 20:21:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 6OYV # _exptl.entry_id 6OYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OYV _cell.length_a 162.362 _cell.length_b 162.362 _cell.length_c 95.694 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 176 n n CHA C4D HEM doub 177 n n CHA HHA HEM sing 178 n n CHB C4A HEM sing 179 n n CHB C1B HEM doub 180 n n CHB HHB HEM sing 181 n n CHC C4B HEM sing 182 n n CHC C1C HEM doub 183 n n CHC HHC HEM sing 184 n n CHD C4C HEM doub 185 n n CHD C1D HEM sing 186 n n CHD HHD HEM sing 187 n n C1A C2A HEM doub 188 n y C1A NA HEM sing 189 n y C2A C3A HEM sing 190 n y C2A CAA HEM sing 191 n n C3A C4A HEM doub 192 n y C3A CMA HEM sing 193 n n C4A NA HEM sing 194 n y CMA HMA HEM sing 195 n n CMA HMAA HEM sing 196 n n CMA HMAB HEM sing 197 n n CAA CBA HEM sing 198 n n CAA HAA HEM sing 199 n n CAA HAAA HEM sing 200 n n CBA CGA HEM sing 201 n n CBA HBA HEM sing 202 n n CBA HBAA HEM sing 203 n n CGA O1A HEM doub 204 n n CGA O2A HEM sing 205 n n C1B C2B HEM sing 206 n n C1B NB HEM sing 207 n n C2B C3B HEM doub 208 n n C2B CMB HEM sing 209 n n C3B C4B HEM sing 210 n n C3B CAB HEM sing 211 n n C4B NB HEM doub 212 n n CMB HMB HEM sing 213 n n CMB HMBA HEM sing 214 n n CMB HMBB HEM sing 215 n n CAB CBB HEM doub 216 n n CAB HAB HEM sing 217 n n CBB HBB HEM sing 218 n n CBB HBBA HEM sing 219 n n C1C C2C HEM sing 220 n y C1C NC HEM sing 221 n y C2C C3C HEM doub 222 n y C2C CMC HEM sing 223 n n C3C C4C HEM sing 224 n y C3C CAC HEM sing 225 n n C4C NC HEM sing 226 n y CMC HMC HEM sing 227 n n CMC HMCA HEM sing 228 n n CMC HMCB HEM sing 229 n n CAC CBC HEM doub 230 n n CAC HAC HEM sing 231 n n CBC HBC HEM sing 232 n n CBC HBCA HEM sing 233 n n C1D C2D HEM sing 234 n n C1D ND HEM doub 235 n n C2D C3D HEM doub 236 n n C2D CMD HEM sing 237 n n C3D C4D HEM sing 238 n n C3D CAD HEM sing 239 n n C4D ND HEM sing 240 n n CMD HMD HEM sing 241 n n CMD HMDA HEM sing 242 n n CMD HMDB HEM sing 243 n n CAD CBD HEM sing 244 n n CAD HAD HEM sing 245 n n CAD HADA HEM sing 246 n n CBD CGD HEM sing 247 n n CBD HBD HEM sing 248 n n CBD HBDA HEM sing 249 n n CGD O1D HEM doub 250 n n CGD O2D HEM sing 251 n n O2A H2A HEM sing 252 n n O2D H2D HEM sing 253 n n FE NA HEM sing 254 n n FE NB HEM sing 255 n n FE NC HEM sing 256 n n FE ND HEM sing 257 n n # _atom_sites.entry_id 6OYV _atom_sites.fract_transf_matrix[1][1] 0.006159 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EST A 1 601 602 EST EST . D 3 HEM A 1 602 601 HEM HEM . E 2 EST B 1 601 602 EST EST . F 3 HEM B 1 602 601 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 -41.909 13.557 1.37 1 128.72 ? CHA HEM 602 A 1 HETATM 2 C CHB HEM . . . D 3 -39.921 17.918 0.559 1 156.54 ? CHB HEM 602 A 1 HETATM 3 C CHC HEM . . . D 3 -35.949 16.516 2.967 1 123.99 ? CHC HEM 602 A 1 HETATM 4 C CHD HEM . . . D 3 -37.761 12.022 3.343 1 129.56 ? CHD HEM 602 A 1 HETATM 5 C C1A HEM . . . D 3 -41.69 14.831 0.893 1 135.86 ? C1A HEM 602 A 1 HETATM 6 C C2A HEM . . . D 3 -42.545 15.543 -0.031 1 121.17 ? C2A HEM 602 A 1 HETATM 7 C C3A HEM . . . D 3 -42.006 16.742 -0.254 1 122.53 ? C3A HEM 602 A 1 HETATM 8 C C4A HEM . . . D 3 -40.78 16.839 0.515 1 138.68 ? C4A HEM 602 A 1 HETATM 9 C CMA HEM . . . D 3 -42.591 17.83 -1.177 1 128.13 ? CMA HEM 602 A 1 HETATM 10 C CAA HEM . . . D 3 -43.855 14.995 -0.634 1 112.63 ? CAA HEM 602 A 1 HETATM 11 C CBA HEM . . . D 3 -45.011 15.424 0.261 1 106.28 ? CBA HEM 602 A 1 HETATM 12 C CGA HEM . . . D 3 -46.325 14.983 -0.326 1 104.74 ? CGA HEM 602 A 1 HETATM 13 O O1A HEM . . . D 3 -47.367 15.592 0.029 1 101.97 ? O1A HEM 602 A 1 HETATM 14 O O2A HEM . . . D 3 -46.332 14.029 -1.145 1 96.51 ? O2A HEM 602 A 1 HETATM 15 C C1B HEM . . . D 3 -38.706 17.946 1.212 1 133.72 ? C1B HEM 602 A 1 HETATM 16 C C2B HEM . . . D 3 -37.887 19.122 1.45 1 119.6 ? C2B HEM 602 A 1 HETATM 17 C C3B HEM . . . D 3 -36.792 18.735 2.122 1 119.28 ? C3B HEM 602 A 1 HETATM 18 C C4B HEM . . . D 3 -36.882 17.3 2.32 1 132.07 ? C4B HEM 602 A 1 HETATM 19 C CMB HEM . . . D 3 -38.261 20.552 0.996 1 114.05 ? CMB HEM 602 A 1 HETATM 20 C CAB HEM . . . D 3 -35.595 19.591 2.611 1 110.02 ? CAB HEM 602 A 1 HETATM 21 C CBB HEM . . . D 3 -35.419 20.869 2.253 1 109.04 ? CBB HEM 602 A 1 HETATM 22 C C1C HEM . . . D 3 -36.137 15.207 3.358 1 133.61 ? C1C HEM 602 A 1 HETATM 23 C C2C HEM . . . D 3 -35.345 14.475 4.326 1 119.55 ? C2C HEM 602 A 1 HETATM 24 C C3C HEM . . . D 3 -35.841 13.233 4.413 1 119.98 ? C3C HEM 602 A 1 HETATM 25 C C4C HEM . . . D 3 -36.975 13.141 3.524 1 137.04 ? C4C HEM 602 A 1 HETATM 26 C CMC HEM . . . D 3 -34.131 15.056 5.079 1 114.44 ? CMC HEM 602 A 1 HETATM 27 C CAC HEM . . . D 3 -35.381 12.064 5.31 1 112.64 ? CAC HEM 602 A 1 HETATM 28 C CBC HEM . . . D 3 -34.638 12.276 6.398 1 115.91 ? CBC HEM 602 A 1 HETATM 29 C C1D HEM . . . D 3 -39.03 12.024 2.809 1 135.24 ? C1D HEM 602 A 1 HETATM 30 C C2D HEM . . . D 3 -39.888 10.877 2.618 1 119.36 ? C2D HEM 602 A 1 HETATM 31 C C3D HEM . . . D 3 -41.029 11.303 2.075 1 118.94 ? C3D HEM 602 A 1 HETATM 32 C C4D HEM . . . D 3 -40.942 12.734 1.9 1 129.1 ? C4D HEM 602 A 1 HETATM 33 C CMD HEM . . . D 3 -39.531 9.424 2.983 1 113.77 ? CMD HEM 602 A 1 HETATM 34 C CAD HEM . . . D 3 -42.245 10.439 1.693 1 111.88 ? CAD HEM 602 A 1 HETATM 35 C CBD HEM . . . D 3 -43.293 10.573 2.79 1 104.8 ? CBD HEM 602 A 1 HETATM 36 C CGD HEM . . . D 3 -44.55 9.876 2.36 1 95.42 ? CGD HEM 602 A 1 HETATM 37 O O1D HEM . . . D 3 -45.399 9.6 3.245 1 95.23 ? O1D HEM 602 A 1 HETATM 38 O O2D HEM . . . D 3 -44.695 9.594 1.143 1 93.61 ? O2D HEM 602 A 1 HETATM 39 N NA HEM . . . D 3 -40.617 15.648 1.203 1 142.4 ? NA HEM 602 A 1 HETATM 40 N NB HEM . . . D 3 -38.064 16.848 1.758 1 140.97 ? NB HEM 602 A 1 HETATM 41 N NC HEM . . . D 3 -37.127 14.361 2.891 1 138.29 ? NC HEM 602 A 1 HETATM 42 N ND HEM . . . D 3 -39.707 13.14 2.36 1 146.04 ? ND HEM 602 A 1 HETATM 43 FE FE HEM . . . D 3 -38.828 14.915 1.904 1 174.32 ? FE HEM 602 A 1 HETATM 44 H HHB HEM . . . D 3 -40.197 18.732 0.089 1 188.04 ? HHB HEM 602 A 1 HETATM 45 H HHC HEM . . . D 3 -35.08 16.923 3.165 1 148.99 ? HHC HEM 602 A 1 HETATM 46 H HHD HEM . . . D 3 -37.387 11.159 3.616 1 155.67 ? HHD HEM 602 A 1 HETATM 47 H HMA HEM . . . D 3 -42.131 18.679 -1.014 1 153.95 ? HMA HEM 602 A 1 HETATM 48 H HMAA HEM . . . D 3 -43.548 17.937 -0.991 1 153.95 ? HMAA HEM 602 A 1 HETATM 49 H HMAB HEM . . . D 3 -42.468 17.566 -2.113 1 153.95 ? HMAB HEM 602 A 1 HETATM 50 H HAA HEM . . . D 3 -43.816 14.026 -0.676 1 135.35 ? HAA HEM 602 A 1 HETATM 51 H HAAA HEM . . . D 3 -43.98 15.353 -1.526 1 135.35 ? HAAA HEM 602 A 1 HETATM 52 H HBA HEM . . . D 3 -45.007 16.391 0.344 1 127.73 ? HBA HEM 602 A 1 HETATM 53 H HBAA HEM . . . D 3 -44.902 15.023 1.137 1 127.73 ? HBAA HEM 602 A 1 HETATM 54 H HMB HEM . . . D 3 -37.999 21.188 1.679 1 137.05 ? HMB HEM 602 A 1 HETATM 55 H HMBA HEM . . . D 3 -39.22 20.606 0.855 1 137.05 ? HMBA HEM 602 A 1 HETATM 56 H HMBB HEM . . . D 3 -37.801 20.759 0.167 1 137.05 ? HMBB HEM 602 A 1 HETATM 57 H HAB HEM . . . D 3 -34.952 19.186 3.198 1 132.23 ? HAB HEM 602 A 1 HETATM 58 H HBB HEM . . . D 3 -34.654 21.365 2.585 1 131.04 ? HBB HEM 602 A 1 HETATM 59 H HBBA HEM . . . D 3 -36.056 21.299 1.661 1 131.04 ? HBBA HEM 602 A 1 HETATM 60 H HMC HEM . . . D 3 -33.696 15.725 4.527 1 137.53 ? HMC HEM 602 A 1 HETATM 61 H HMCA HEM . . . D 3 -33.502 14.345 5.279 1 137.53 ? HMCA HEM 602 A 1 HETATM 62 H HMCB HEM . . . D 3 -34.428 15.465 5.907 1 137.53 ? HMCB HEM 602 A 1 HETATM 63 H HAC HEM . . . D 3 -35.635 11.167 5.081 1 135.37 ? HAC HEM 602 A 1 HETATM 64 H HBC HEM . . . D 3 -34.359 11.528 6.949 1 139.29 ? HBC HEM 602 A 1 HETATM 65 H HBCA HEM . . . D 3 -34.376 13.179 6.639 1 139.29 ? HBCA HEM 602 A 1 HETATM 66 H HMD HEM . . . D 3 -40.322 8.856 2.875 1 136.72 ? HMD HEM 602 A 1 HETATM 67 H HMDA HEM . . . D 3 -39.227 9.385 3.914 1 136.72 ? HMDA HEM 602 A 1 HETATM 68 H HMDB HEM . . . D 3 -38.817 9.104 2.393 1 136.72 ? HMDB HEM 602 A 1 HETATM 69 H HAD HEM . . . D 3 -41.974 9.511 1.611 1 134.46 ? HAD HEM 602 A 1 HETATM 70 H HADA HEM . . . D 3 -42.612 10.745 0.85 1 134.46 ? HADA HEM 602 A 1 HETATM 71 H HBD HEM . . . D 3 -43.48 11.512 2.946 1 125.95 ? HBD HEM 602 A 1 HETATM 72 H HBDA HEM . . . D 3 -42.961 10.169 3.607 1 125.95 ? HBDA HEM 602 A 1 HETATM 73 H HHA HEM . . . D 3 -42.824 13.21 1.328 1 154.66 ? HHA HEM 602 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 73 #