data_6OYV # _model_server_result.job_id yAaVOuX1R15k9BFKu-yQkg _model_server_result.datetime_utc '2024-10-17 06:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6oyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6OYV # _exptl.entry_id 6OYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6OYV _cell.length_a 162.362 _cell.length_b 162.362 _cell.length_c 95.694 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 176 n n CHA C4D HEM doub 177 n n CHA HHA HEM sing 178 n n CHB C4A HEM sing 179 n n CHB C1B HEM doub 180 n n CHB HHB HEM sing 181 n n CHC C4B HEM sing 182 n n CHC C1C HEM doub 183 n n CHC HHC HEM sing 184 n n CHD C4C HEM doub 185 n n CHD C1D HEM sing 186 n n CHD HHD HEM sing 187 n n C1A C2A HEM doub 188 n y C1A NA HEM sing 189 n y C2A C3A HEM sing 190 n y C2A CAA HEM sing 191 n n C3A C4A HEM doub 192 n y C3A CMA HEM sing 193 n n C4A NA HEM sing 194 n y CMA HMA HEM sing 195 n n CMA HMAA HEM sing 196 n n CMA HMAB HEM sing 197 n n CAA CBA HEM sing 198 n n CAA HAA HEM sing 199 n n CAA HAAA HEM sing 200 n n CBA CGA HEM sing 201 n n CBA HBA HEM sing 202 n n CBA HBAA HEM sing 203 n n CGA O1A HEM doub 204 n n CGA O2A HEM sing 205 n n C1B C2B HEM sing 206 n n C1B NB HEM sing 207 n n C2B C3B HEM doub 208 n n C2B CMB HEM sing 209 n n C3B C4B HEM sing 210 n n C3B CAB HEM sing 211 n n C4B NB HEM doub 212 n n CMB HMB HEM sing 213 n n CMB HMBA HEM sing 214 n n CMB HMBB HEM sing 215 n n CAB CBB HEM doub 216 n n CAB HAB HEM sing 217 n n CBB HBB HEM sing 218 n n CBB HBBA HEM sing 219 n n C1C C2C HEM sing 220 n y C1C NC HEM sing 221 n y C2C C3C HEM doub 222 n y C2C CMC HEM sing 223 n n C3C C4C HEM sing 224 n y C3C CAC HEM sing 225 n n C4C NC HEM sing 226 n y CMC HMC HEM sing 227 n n CMC HMCA HEM sing 228 n n CMC HMCB HEM sing 229 n n CAC CBC HEM doub 230 n n CAC HAC HEM sing 231 n n CBC HBC HEM sing 232 n n CBC HBCA HEM sing 233 n n C1D C2D HEM sing 234 n n C1D ND HEM doub 235 n n C2D C3D HEM doub 236 n n C2D CMD HEM sing 237 n n C3D C4D HEM sing 238 n n C3D CAD HEM sing 239 n n C4D ND HEM sing 240 n n CMD HMD HEM sing 241 n n CMD HMDA HEM sing 242 n n CMD HMDB HEM sing 243 n n CAD CBD HEM sing 244 n n CAD HAD HEM sing 245 n n CAD HADA HEM sing 246 n n CBD CGD HEM sing 247 n n CBD HBD HEM sing 248 n n CBD HBDA HEM sing 249 n n CGD O1D HEM doub 250 n n CGD O2D HEM sing 251 n n O2A H2A HEM sing 252 n n O2D H2D HEM sing 253 n n FE NA HEM sing 254 n n FE NB HEM sing 255 n n FE NC HEM sing 256 n n FE ND HEM sing 257 n n # _atom_sites.entry_id 6OYV _atom_sites.fract_transf_matrix[1][1] 0.006159 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EST A 1 601 602 EST EST . D 3 HEM A 1 602 601 HEM HEM . E 2 EST B 1 601 602 EST EST . F 3 HEM B 1 602 601 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . F 3 -42.603 10.833 46.618 1 103.19 ? CHA HEM 602 B 1 HETATM 2 C CHB HEM . . . F 3 -43.368 6.054 47.089 1 98.11 ? CHB HEM 602 B 1 HETATM 3 C CHC HEM . . . F 3 -39.037 5.195 45.098 1 104.26 ? CHC HEM 602 B 1 HETATM 4 C CHD HEM . . . F 3 -38.324 9.951 44.5 1 106.54 ? CHD HEM 602 B 1 HETATM 5 C C1A HEM . . . F 3 -43.159 9.623 46.971 1 104.41 ? C1A HEM 602 B 1 HETATM 6 C C2A HEM . . . F 3 -44.362 9.436 47.753 1 100.71 ? C2A HEM 602 B 1 HETATM 7 C C3A HEM . . . F 3 -44.577 8.128 47.881 1 99.46 ? C3A HEM 602 B 1 HETATM 8 C C4A HEM . . . F 3 -43.514 7.423 47.191 1 101.97 ? C4A HEM 602 B 1 HETATM 9 C CMA HEM . . . F 3 -45.757 7.487 48.641 1 97.64 ? CMA HEM 602 B 1 HETATM 10 C CAA HEM . . . F 3 -45.255 10.552 48.335 1 101.22 ? CAA HEM 602 B 1 HETATM 11 C CBA HEM . . . F 3 -46.36 10.857 47.331 1 101.16 ? CBA HEM 602 B 1 HETATM 12 C CGA HEM . . . F 3 -47.315 11.869 47.905 1 99.66 ? CGA HEM 602 B 1 HETATM 13 O O1A HEM . . . F 3 -48.479 11.935 47.434 1 101.78 ? O1A HEM 602 B 1 HETATM 14 O O2A HEM . . . F 3 -46.915 12.608 48.839 1 99.76 ? O2A HEM 602 B 1 HETATM 15 C C1B HEM . . . F 3 -42.309 5.404 46.493 1 98.96 ? C1B HEM 602 B 1 HETATM 16 C C2B HEM . . . F 3 -42.256 4.005 46.118 1 97.83 ? C2B HEM 602 B 1 HETATM 17 C C3B HEM . . . F 3 -41.056 3.767 45.562 1 98.68 ? C3B HEM 602 B 1 HETATM 18 C C4B HEM . . . F 3 -40.314 5.009 45.577 1 102.63 ? C4B HEM 602 B 1 HETATM 19 C CMB HEM . . . F 3 -43.415 3.007 46.339 1 95.68 ? CMB HEM 602 B 1 HETATM 20 C CAB HEM . . . F 3 -40.477 2.444 44.998 1 96.2 ? CAB HEM 602 B 1 HETATM 21 C CBB HEM . . . F 3 -41.087 1.264 45.161 1 105.43 ? CBB HEM 602 B 1 HETATM 22 C C1C HEM . . . F 3 -38.535 6.395 44.647 1 105.71 ? C1C HEM 602 B 1 HETATM 23 C C2C HEM . . . F 3 -37.485 6.567 43.666 1 104.56 ? C2C HEM 602 B 1 HETATM 24 C C3C HEM . . . F 3 -37.281 7.884 43.507 1 101.97 ? C3C HEM 602 B 1 HETATM 25 C C4C HEM . . . F 3 -38.207 8.584 44.373 1 105.08 ? C4C HEM 602 B 1 HETATM 26 C CMC HEM . . . F 3 -36.754 5.394 42.973 1 102.97 ? CMC HEM 602 B 1 HETATM 27 C CAC HEM . . . F 3 -36.282 8.6 42.567 1 102.81 ? CAC HEM 602 B 1 HETATM 28 C CBC HEM . . . F 3 -35.736 7.975 41.519 1 103.39 ? CBC HEM 602 B 1 HETATM 29 C C1D HEM . . . F 3 -39.401 10.612 45.052 1 106.99 ? C1D HEM 602 B 1 HETATM 30 C C2D HEM . . . F 3 -39.554 12.048 45.185 1 103.25 ? C2D HEM 602 B 1 HETATM 31 C C3D HEM . . . F 3 -40.731 12.284 45.77 1 103.29 ? C3D HEM 602 B 1 HETATM 32 C C4D HEM . . . F 3 -41.372 11.012 46.026 1 104.84 ? C4D HEM 602 B 1 HETATM 33 C CMD HEM . . . F 3 -38.529 13.111 44.735 1 105.45 ? CMD HEM 602 B 1 HETATM 34 C CAD HEM . . . F 3 -41.329 13.663 46.118 1 106.66 ? CAD HEM 602 B 1 HETATM 35 C CBD HEM . . . F 3 -42.356 14.036 45.054 1 113.65 ? CBD HEM 602 B 1 HETATM 36 C CGD HEM . . . F 3 -43.081 15.295 45.453 1 106.44 ? CGD HEM 602 B 1 HETATM 37 O O1D HEM . . . F 3 -43.726 15.917 44.57 1 104.45 ? O1D HEM 602 B 1 HETATM 38 O O2D HEM . . . F 3 -43.014 15.677 46.65 1 105.72 ? O2D HEM 602 B 1 HETATM 39 N NA HEM . . . F 3 -42.664 8.371 46.648 1 105.79 ? NA HEM 602 B 1 HETATM 40 N NB HEM . . . F 3 -41.107 5.988 46.146 1 105.39 ? NB HEM 602 B 1 HETATM 41 N NC HEM . . . F 3 -38.956 7.645 45.057 1 106.18 ? NC HEM 602 B 1 HETATM 42 N ND HEM . . . F 3 -40.533 10.01 45.575 1 106.4 ? ND HEM 602 B 1 HETATM 43 FE FE HEM . . . F 3 -40.776 8.001 45.941 1 137.35 ? FE HEM 602 B 1 HETATM 44 H HHB HEM . . . F 3 -44.077 5.497 47.474 1 117.93 ? HHB HEM 602 B 1 HETATM 45 H HHC HEM . . . F 3 -38.442 4.416 45.076 1 125.31 ? HHC HEM 602 B 1 HETATM 46 H HHD HEM . . . F 3 -37.581 10.498 44.171 1 128.05 ? HHD HEM 602 B 1 HETATM 47 H HMA HEM . . . F 3 -45.754 6.519 48.493 1 117.36 ? HMA HEM 602 B 1 HETATM 48 H HMAA HEM . . . F 3 -46.6 7.865 48.315 1 117.36 ? HMAA HEM 602 B 1 HETATM 49 H HMAB HEM . . . F 3 -45.666 7.67 49.6 1 117.36 ? HMAB HEM 602 B 1 HETATM 50 H HAA HEM . . . F 3 -44.724 11.349 48.49 1 121.66 ? HAA HEM 602 B 1 HETATM 51 H HAAA HEM . . . F 3 -45.646 10.255 49.172 1 121.66 ? HAAA HEM 602 B 1 HETATM 52 H HBA HEM . . . F 3 -46.842 10.04 47.127 1 121.59 ? HBA HEM 602 B 1 HETATM 53 H HBAA HEM . . . F 3 -45.966 11.212 46.519 1 121.59 ? HBAA HEM 602 B 1 HETATM 54 H HMB HEM . . . F 3 -43.463 2.395 45.588 1 115.02 ? HMB HEM 602 B 1 HETATM 55 H HMBA HEM . . . F 3 -44.251 3.493 46.413 1 115.02 ? HMBA HEM 602 B 1 HETATM 56 H HMBB HEM . . . F 3 -43.259 2.506 47.154 1 115.02 ? HMBB HEM 602 B 1 HETATM 57 H HAB HEM . . . F 3 -39.649 2.473 44.512 1 115.64 ? HAB HEM 602 B 1 HETATM 58 H HBB HEM . . . F 3 -40.692 0.459 44.792 1 126.71 ? HBB HEM 602 B 1 HETATM 59 H HBBA HEM . . . F 3 -41.924 1.215 45.648 1 126.71 ? HBBA HEM 602 B 1 HETATM 60 H HMC HEM . . . F 3 -36.713 4.636 43.577 1 123.76 ? HMC HEM 602 B 1 HETATM 61 H HMCA HEM . . . F 3 -35.854 5.668 42.736 1 123.76 ? HMCA HEM 602 B 1 HETATM 62 H HMCB HEM . . . F 3 -37.236 5.141 42.17 1 123.76 ? HMCB HEM 602 B 1 HETATM 63 H HAC HEM . . . F 3 -36.049 9.514 42.741 1 123.57 ? HAC HEM 602 B 1 HETATM 64 H HBC HEM . . . F 3 -35.113 8.447 40.945 1 124.27 ? HBC HEM 602 B 1 HETATM 65 H HBCA HEM . . . F 3 -35.964 7.051 41.332 1 124.27 ? HBCA HEM 602 B 1 HETATM 66 H HMD HEM . . . F 3 -38.952 13.995 44.739 1 126.73 ? HMD HEM 602 B 1 HETATM 67 H HMDA HEM . . . F 3 -38.218 12.902 43.83 1 126.73 ? HMDA HEM 602 B 1 HETATM 68 H HMDB HEM . . . F 3 -37.767 13.111 45.351 1 126.73 ? HMDB HEM 602 B 1 HETATM 69 H HAD HEM . . . F 3 -40.624 14.329 46.137 1 128.19 ? HAD HEM 602 B 1 HETATM 70 H HADA HEM . . . F 3 -41.759 13.622 46.986 1 128.19 ? HADA HEM 602 B 1 HETATM 71 H HBD HEM . . . F 3 -42.996 13.314 44.959 1 136.57 ? HBD HEM 602 B 1 HETATM 72 H HBDA HEM . . . F 3 -41.904 14.181 44.209 1 136.57 ? HBDA HEM 602 B 1 HETATM 73 H HHA HEM . . . F 3 -43.131 11.638 46.804 1 124.03 ? HHA HEM 602 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 125 _model_server_stats.create_model_time_ms 154 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 73 #