data_6OYV
#
_model_server_result.job_id            upKdwBHdUFA7AyOsd7WWbg 
_model_server_result.datetime_utc      '2024-11-29 09:12:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6oyv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    6OYV 
#
_exptl.entry_id    6OYV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6OYV 
_cell.length_a            162.362 
_cell.length_b            162.362 
_cell.length_c            95.694 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6OYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 176 n n 
CHA C4D HEM doub 177 n n 
CHA HHA HEM sing 178 n n 
CHB C4A HEM sing 179 n n 
CHB C1B HEM doub 180 n n 
CHB HHB HEM sing 181 n n 
CHC C4B HEM sing 182 n n 
CHC C1C HEM doub 183 n n 
CHC HHC HEM sing 184 n n 
CHD C4C HEM doub 185 n n 
CHD C1D HEM sing 186 n n 
CHD HHD HEM sing 187 n n 
C1A C2A HEM doub 188 n y 
C1A NA HEM sing 189 n y 
C2A C3A HEM sing 190 n y 
C2A CAA HEM sing 191 n n 
C3A C4A HEM doub 192 n y 
C3A CMA HEM sing 193 n n 
C4A NA HEM sing 194 n y 
CMA HMA HEM sing 195 n n 
CMA HMAA HEM sing 196 n n 
CMA HMAB HEM sing 197 n n 
CAA CBA HEM sing 198 n n 
CAA HAA HEM sing 199 n n 
CAA HAAA HEM sing 200 n n 
CBA CGA HEM sing 201 n n 
CBA HBA HEM sing 202 n n 
CBA HBAA HEM sing 203 n n 
CGA O1A HEM doub 204 n n 
CGA O2A HEM sing 205 n n 
C1B C2B HEM sing 206 n n 
C1B NB HEM sing 207 n n 
C2B C3B HEM doub 208 n n 
C2B CMB HEM sing 209 n n 
C3B C4B HEM sing 210 n n 
C3B CAB HEM sing 211 n n 
C4B NB HEM doub 212 n n 
CMB HMB HEM sing 213 n n 
CMB HMBA HEM sing 214 n n 
CMB HMBB HEM sing 215 n n 
CAB CBB HEM doub 216 n n 
CAB HAB HEM sing 217 n n 
CBB HBB HEM sing 218 n n 
CBB HBBA HEM sing 219 n n 
C1C C2C HEM sing 220 n y 
C1C NC HEM sing 221 n y 
C2C C3C HEM doub 222 n y 
C2C CMC HEM sing 223 n n 
C3C C4C HEM sing 224 n y 
C3C CAC HEM sing 225 n n 
C4C NC HEM sing 226 n y 
CMC HMC HEM sing 227 n n 
CMC HMCA HEM sing 228 n n 
CMC HMCB HEM sing 229 n n 
CAC CBC HEM doub 230 n n 
CAC HAC HEM sing 231 n n 
CBC HBC HEM sing 232 n n 
CBC HBCA HEM sing 233 n n 
C1D C2D HEM sing 234 n n 
C1D ND HEM doub 235 n n 
C2D C3D HEM doub 236 n n 
C2D CMD HEM sing 237 n n 
C3D C4D HEM sing 238 n n 
C3D CAD HEM sing 239 n n 
C4D ND HEM sing 240 n n 
CMD HMD HEM sing 241 n n 
CMD HMDA HEM sing 242 n n 
CMD HMDB HEM sing 243 n n 
CAD CBD HEM sing 244 n n 
CAD HAD HEM sing 245 n n 
CAD HADA HEM sing 246 n n 
CBD CGD HEM sing 247 n n 
CBD HBD HEM sing 248 n n 
CBD HBDA HEM sing 249 n n 
CGD O1D HEM doub 250 n n 
CGD O2D HEM sing 251 n n 
O2A H2A HEM sing 252 n n 
O2D H2D HEM sing 253 n n 
FE NA HEM sing 254 n n 
FE NB HEM sing 255 n n 
FE NC HEM sing 256 n n 
FE ND HEM sing 257 n n 
#
_atom_sites.entry_id                     6OYV 
_atom_sites.fract_transf_matrix[1][1]    0.006159 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006159 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01045 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EST A 1 601 602 EST EST . 
D 3 HEM A 1 602 601 HEM HEM . 
E 2 EST B 1 601 602 EST EST . 
F 3 HEM B 1 602 601 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 3 -42.603 10.833 46.618 1 103.19 ? CHA HEM 602 B 1 
HETATM 2 C CHB HEM . . . F 3 -43.368 6.054 47.089 1 98.11 ? CHB HEM 602 B 1 
HETATM 3 C CHC HEM . . . F 3 -39.037 5.195 45.098 1 104.26 ? CHC HEM 602 B 1 
HETATM 4 C CHD HEM . . . F 3 -38.324 9.951 44.5 1 106.54 ? CHD HEM 602 B 1 
HETATM 5 C C1A HEM . . . F 3 -43.159 9.623 46.971 1 104.41 ? C1A HEM 602 B 1 
HETATM 6 C C2A HEM . . . F 3 -44.362 9.436 47.753 1 100.71 ? C2A HEM 602 B 1 
HETATM 7 C C3A HEM . . . F 3 -44.577 8.128 47.881 1 99.46 ? C3A HEM 602 B 1 
HETATM 8 C C4A HEM . . . F 3 -43.514 7.423 47.191 1 101.97 ? C4A HEM 602 B 1 
HETATM 9 C CMA HEM . . . F 3 -45.757 7.487 48.641 1 97.64 ? CMA HEM 602 B 1 
HETATM 10 C CAA HEM . . . F 3 -45.255 10.552 48.335 1 101.22 ? CAA HEM 602 B 1 
HETATM 11 C CBA HEM . . . F 3 -46.36 10.857 47.331 1 101.16 ? CBA HEM 602 B 1 
HETATM 12 C CGA HEM . . . F 3 -47.315 11.869 47.905 1 99.66 ? CGA HEM 602 B 1 
HETATM 13 O O1A HEM . . . F 3 -48.479 11.935 47.434 1 101.78 ? O1A HEM 602 B 1 
HETATM 14 O O2A HEM . . . F 3 -46.915 12.608 48.839 1 99.76 ? O2A HEM 602 B 1 
HETATM 15 C C1B HEM . . . F 3 -42.309 5.404 46.493 1 98.96 ? C1B HEM 602 B 1 
HETATM 16 C C2B HEM . . . F 3 -42.256 4.005 46.118 1 97.83 ? C2B HEM 602 B 1 
HETATM 17 C C3B HEM . . . F 3 -41.056 3.767 45.562 1 98.68 ? C3B HEM 602 B 1 
HETATM 18 C C4B HEM . . . F 3 -40.314 5.009 45.577 1 102.63 ? C4B HEM 602 B 1 
HETATM 19 C CMB HEM . . . F 3 -43.415 3.007 46.339 1 95.68 ? CMB HEM 602 B 1 
HETATM 20 C CAB HEM . . . F 3 -40.477 2.444 44.998 1 96.2 ? CAB HEM 602 B 1 
HETATM 21 C CBB HEM . . . F 3 -41.087 1.264 45.161 1 105.43 ? CBB HEM 602 B 1 
HETATM 22 C C1C HEM . . . F 3 -38.535 6.395 44.647 1 105.71 ? C1C HEM 602 B 1 
HETATM 23 C C2C HEM . . . F 3 -37.485 6.567 43.666 1 104.56 ? C2C HEM 602 B 1 
HETATM 24 C C3C HEM . . . F 3 -37.281 7.884 43.507 1 101.97 ? C3C HEM 602 B 1 
HETATM 25 C C4C HEM . . . F 3 -38.207 8.584 44.373 1 105.08 ? C4C HEM 602 B 1 
HETATM 26 C CMC HEM . . . F 3 -36.754 5.394 42.973 1 102.97 ? CMC HEM 602 B 1 
HETATM 27 C CAC HEM . . . F 3 -36.282 8.6 42.567 1 102.81 ? CAC HEM 602 B 1 
HETATM 28 C CBC HEM . . . F 3 -35.736 7.975 41.519 1 103.39 ? CBC HEM 602 B 1 
HETATM 29 C C1D HEM . . . F 3 -39.401 10.612 45.052 1 106.99 ? C1D HEM 602 B 1 
HETATM 30 C C2D HEM . . . F 3 -39.554 12.048 45.185 1 103.25 ? C2D HEM 602 B 1 
HETATM 31 C C3D HEM . . . F 3 -40.731 12.284 45.77 1 103.29 ? C3D HEM 602 B 1 
HETATM 32 C C4D HEM . . . F 3 -41.372 11.012 46.026 1 104.84 ? C4D HEM 602 B 1 
HETATM 33 C CMD HEM . . . F 3 -38.529 13.111 44.735 1 105.45 ? CMD HEM 602 B 1 
HETATM 34 C CAD HEM . . . F 3 -41.329 13.663 46.118 1 106.66 ? CAD HEM 602 B 1 
HETATM 35 C CBD HEM . . . F 3 -42.356 14.036 45.054 1 113.65 ? CBD HEM 602 B 1 
HETATM 36 C CGD HEM . . . F 3 -43.081 15.295 45.453 1 106.44 ? CGD HEM 602 B 1 
HETATM 37 O O1D HEM . . . F 3 -43.726 15.917 44.57 1 104.45 ? O1D HEM 602 B 1 
HETATM 38 O O2D HEM . . . F 3 -43.014 15.677 46.65 1 105.72 ? O2D HEM 602 B 1 
HETATM 39 N NA HEM . . . F 3 -42.664 8.371 46.648 1 105.79 ? NA HEM 602 B 1 
HETATM 40 N NB HEM . . . F 3 -41.107 5.988 46.146 1 105.39 ? NB HEM 602 B 1 
HETATM 41 N NC HEM . . . F 3 -38.956 7.645 45.057 1 106.18 ? NC HEM 602 B 1 
HETATM 42 N ND HEM . . . F 3 -40.533 10.01 45.575 1 106.4 ? ND HEM 602 B 1 
HETATM 43 FE FE HEM . . . F 3 -40.776 8.001 45.941 1 137.35 ? FE HEM 602 B 1 
HETATM 44 H HHB HEM . . . F 3 -44.077 5.497 47.474 1 117.93 ? HHB HEM 602 B 1 
HETATM 45 H HHC HEM . . . F 3 -38.442 4.416 45.076 1 125.31 ? HHC HEM 602 B 1 
HETATM 46 H HHD HEM . . . F 3 -37.581 10.498 44.171 1 128.05 ? HHD HEM 602 B 1 
HETATM 47 H HMA HEM . . . F 3 -45.754 6.519 48.493 1 117.36 ? HMA HEM 602 B 1 
HETATM 48 H HMAA HEM . . . F 3 -46.6 7.865 48.315 1 117.36 ? HMAA HEM 602 B 1 
HETATM 49 H HMAB HEM . . . F 3 -45.666 7.67 49.6 1 117.36 ? HMAB HEM 602 B 1 
HETATM 50 H HAA HEM . . . F 3 -44.724 11.349 48.49 1 121.66 ? HAA HEM 602 B 1 
HETATM 51 H HAAA HEM . . . F 3 -45.646 10.255 49.172 1 121.66 ? HAAA HEM 602 B 1 
HETATM 52 H HBA HEM . . . F 3 -46.842 10.04 47.127 1 121.59 ? HBA HEM 602 B 1 
HETATM 53 H HBAA HEM . . . F 3 -45.966 11.212 46.519 1 121.59 ? HBAA HEM 602 B 1 
HETATM 54 H HMB HEM . . . F 3 -43.463 2.395 45.588 1 115.02 ? HMB HEM 602 B 1 
HETATM 55 H HMBA HEM . . . F 3 -44.251 3.493 46.413 1 115.02 ? HMBA HEM 602 B 1 
HETATM 56 H HMBB HEM . . . F 3 -43.259 2.506 47.154 1 115.02 ? HMBB HEM 602 B 1 
HETATM 57 H HAB HEM . . . F 3 -39.649 2.473 44.512 1 115.64 ? HAB HEM 602 B 1 
HETATM 58 H HBB HEM . . . F 3 -40.692 0.459 44.792 1 126.71 ? HBB HEM 602 B 1 
HETATM 59 H HBBA HEM . . . F 3 -41.924 1.215 45.648 1 126.71 ? HBBA HEM 602 B 1 
HETATM 60 H HMC HEM . . . F 3 -36.713 4.636 43.577 1 123.76 ? HMC HEM 602 B 1 
HETATM 61 H HMCA HEM . . . F 3 -35.854 5.668 42.736 1 123.76 ? HMCA HEM 602 B 1 
HETATM 62 H HMCB HEM . . . F 3 -37.236 5.141 42.17 1 123.76 ? HMCB HEM 602 B 1 
HETATM 63 H HAC HEM . . . F 3 -36.049 9.514 42.741 1 123.57 ? HAC HEM 602 B 1 
HETATM 64 H HBC HEM . . . F 3 -35.113 8.447 40.945 1 124.27 ? HBC HEM 602 B 1 
HETATM 65 H HBCA HEM . . . F 3 -35.964 7.051 41.332 1 124.27 ? HBCA HEM 602 B 1 
HETATM 66 H HMD HEM . . . F 3 -38.952 13.995 44.739 1 126.73 ? HMD HEM 602 B 1 
HETATM 67 H HMDA HEM . . . F 3 -38.218 12.902 43.83 1 126.73 ? HMDA HEM 602 B 1 
HETATM 68 H HMDB HEM . . . F 3 -37.767 13.111 45.351 1 126.73 ? HMDB HEM 602 B 1 
HETATM 69 H HAD HEM . . . F 3 -40.624 14.329 46.137 1 128.19 ? HAD HEM 602 B 1 
HETATM 70 H HADA HEM . . . F 3 -41.759 13.622 46.986 1 128.19 ? HADA HEM 602 B 1 
HETATM 71 H HBD HEM . . . F 3 -42.996 13.314 44.959 1 136.57 ? HBD HEM 602 B 1 
HETATM 72 H HBDA HEM . . . F 3 -41.904 14.181 44.209 1 136.57 ? HBDA HEM 602 B 1 
HETATM 73 H HHA HEM . . . F 3 -43.131 11.638 46.804 1 124.03 ? HHA HEM 602 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           73 
#