data_6P06 # _model_server_result.job_id q2twX9qrMEGru56HtDcWBQ _model_server_result.datetime_utc '2024-11-05 05:29:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 6P06 # _exptl.entry_id 6P06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P06 _cell.length_a 58.71 _cell.length_b 97.95 _cell.length_c 100.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 H N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 53 A ASP 50 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? metalc ? metalc2 A OD2 ASP 53 A ASP 50 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc3 A OD1 ASP 53 A ASP 50 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc4 A OD1 ASP 55 A ASP 52 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 A OD2 ASP 55 A ASP 52 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc6 A OE1 GLU 148 A GLU 145 1_555 H CA CA . A CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? metalc ? metalc7 A OE2 GLU 148 A GLU 145 1_555 H CA CA . A CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc8 C O4 NMY . A NMY 301 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc9 D O2A APC . A APC 302 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc10 D O1G APC . A APC 302 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc11 D O1B APC . A APC 302 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc12 D O2A APC . A APC 302 1_555 F CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc13 E CA CA . A CA 303 1_555 K O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc14 E CA CA . A CA 303 1_555 B OE1 GLU 148 B GLU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc15 E CA CA . A CA 303 1_555 B OE2 GLU 148 B GLU 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc16 F CA CA . A CA 304 1_555 K O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc17 G O4 NMY . A NMY 305 1_555 H CA CA . A CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc18 H CA CA . A CA 306 1_555 B OD1 ASP 53 B ASP 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc19 H CA CA . A CA 306 1_555 B OD2 ASP 53 B ASP 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc20 H CA CA . A CA 306 1_555 B OD1 ASP 55 B ASP 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc21 H CA CA . A CA 306 1_555 I O2A APC . B APC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc22 H CA CA . A CA 306 1_555 L O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc23 B OD1 ASP 53 B ASP 50 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc24 B OD2 ASP 55 B ASP 52 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc25 I O3G APC . B APC 301 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.152 ? metalc ? metalc26 I O1B APC . B APC 301 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc27 I O2A APC . B APC 301 1_555 J CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc28 J CA CA . B CA 302 1_555 L O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc29 J CA CA . B CA 302 1_555 L O HOH . B HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6P06 _atom_sites.fract_transf_matrix[1][1] 0.017033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NMY A 1 301 800 NMY NMY . D 3 APC A 1 302 801 APC APC . E 4 CA A 1 303 1 CA CA . F 4 CA A 1 304 2 CA CA . G 2 NMY A 1 305 800 NMY NMY . H 4 CA A 1 306 4 CA CA . I 3 APC B 1 301 801 APC APC . J 4 CA B 1 302 3 CA CA . K 5 HOH A 1 401 55 HOH HOH . K 5 HOH A 2 402 190 HOH HOH . K 5 HOH A 3 403 199 HOH HOH . K 5 HOH A 4 404 134 HOH HOH . K 5 HOH A 5 405 13 HOH HOH . K 5 HOH A 6 406 167 HOH HOH . K 5 HOH A 7 407 84 HOH HOH . K 5 HOH A 8 408 9 HOH HOH . K 5 HOH A 9 409 63 HOH HOH . K 5 HOH A 10 410 196 HOH HOH . K 5 HOH A 11 411 79 HOH HOH . K 5 HOH A 12 412 80 HOH HOH . K 5 HOH A 13 413 42 HOH HOH . K 5 HOH A 14 414 113 HOH HOH . K 5 HOH A 15 415 17 HOH HOH . K 5 HOH A 16 416 27 HOH HOH . K 5 HOH A 17 417 26 HOH HOH . K 5 HOH A 18 418 188 HOH HOH . K 5 HOH A 19 419 142 HOH HOH . K 5 HOH A 20 420 158 HOH HOH . K 5 HOH A 21 421 92 HOH HOH . K 5 HOH A 22 422 3 HOH HOH . K 5 HOH A 23 423 186 HOH HOH . K 5 HOH A 24 424 76 HOH HOH . K 5 HOH A 25 425 123 HOH HOH . K 5 HOH A 26 426 162 HOH HOH . K 5 HOH A 27 427 197 HOH HOH . K 5 HOH A 28 428 30 HOH HOH . K 5 HOH A 29 429 6 HOH HOH . K 5 HOH A 30 430 149 HOH HOH . K 5 HOH A 31 431 53 HOH HOH . K 5 HOH A 32 432 154 HOH HOH . K 5 HOH A 33 433 38 HOH HOH . K 5 HOH A 34 434 95 HOH HOH . K 5 HOH A 35 435 109 HOH HOH . K 5 HOH A 36 436 195 HOH HOH . K 5 HOH A 37 437 144 HOH HOH . K 5 HOH A 38 438 106 HOH HOH . K 5 HOH A 39 439 127 HOH HOH . K 5 HOH A 40 440 4 HOH HOH . K 5 HOH A 41 441 114 HOH HOH . K 5 HOH A 42 442 111 HOH HOH . K 5 HOH A 43 443 62 HOH HOH . K 5 HOH A 44 444 15 HOH HOH . K 5 HOH A 45 445 65 HOH HOH . K 5 HOH A 46 446 99 HOH HOH . K 5 HOH A 47 447 101 HOH HOH . K 5 HOH A 48 448 31 HOH HOH . K 5 HOH A 49 449 117 HOH HOH . K 5 HOH A 50 450 125 HOH HOH . K 5 HOH A 51 451 24 HOH HOH . K 5 HOH A 52 452 75 HOH HOH . K 5 HOH A 53 453 145 HOH HOH . K 5 HOH A 54 454 74 HOH HOH . K 5 HOH A 55 455 108 HOH HOH . K 5 HOH A 56 456 187 HOH HOH . K 5 HOH A 57 457 107 HOH HOH . K 5 HOH A 58 458 97 HOH HOH . K 5 HOH A 59 459 82 HOH HOH . K 5 HOH A 60 460 153 HOH HOH . K 5 HOH A 61 461 12 HOH HOH . K 5 HOH A 62 462 35 HOH HOH . K 5 HOH A 63 463 177 HOH HOH . K 5 HOH A 64 464 141 HOH HOH . K 5 HOH A 65 465 166 HOH HOH . K 5 HOH A 66 466 132 HOH HOH . K 5 HOH A 67 467 201 HOH HOH . K 5 HOH A 68 468 116 HOH HOH . K 5 HOH A 69 469 170 HOH HOH . K 5 HOH A 70 470 118 HOH HOH . K 5 HOH A 71 471 168 HOH HOH . K 5 HOH A 72 472 21 HOH HOH . K 5 HOH A 73 473 203 HOH HOH . K 5 HOH A 74 474 66 HOH HOH . K 5 HOH A 75 475 146 HOH HOH . K 5 HOH A 76 476 202 HOH HOH . K 5 HOH A 77 477 172 HOH HOH . K 5 HOH A 78 478 155 HOH HOH . K 5 HOH A 79 479 41 HOH HOH . K 5 HOH A 80 480 94 HOH HOH . K 5 HOH A 81 481 176 HOH HOH . K 5 HOH A 82 482 184 HOH HOH . K 5 HOH A 83 483 121 HOH HOH . K 5 HOH A 84 484 34 HOH HOH . K 5 HOH A 85 485 182 HOH HOH . K 5 HOH A 86 486 50 HOH HOH . K 5 HOH A 87 487 57 HOH HOH . K 5 HOH A 88 488 174 HOH HOH . K 5 HOH A 89 489 183 HOH HOH . K 5 HOH A 90 490 59 HOH HOH . K 5 HOH A 91 491 163 HOH HOH . K 5 HOH A 92 492 180 HOH HOH . K 5 HOH A 93 493 25 HOH HOH . K 5 HOH A 94 494 128 HOH HOH . K 5 HOH A 95 495 156 HOH HOH . K 5 HOH A 96 496 131 HOH HOH . K 5 HOH A 97 497 200 HOH HOH . K 5 HOH A 98 498 181 HOH HOH . K 5 HOH A 99 499 100 HOH HOH . K 5 HOH A 100 500 169 HOH HOH . L 5 HOH B 1 401 189 HOH HOH . L 5 HOH B 2 402 43 HOH HOH . L 5 HOH B 3 403 191 HOH HOH . L 5 HOH B 4 404 90 HOH HOH . L 5 HOH B 5 405 140 HOH HOH . L 5 HOH B 6 406 1 HOH HOH . L 5 HOH B 7 407 164 HOH HOH . L 5 HOH B 8 408 147 HOH HOH . L 5 HOH B 9 409 192 HOH HOH . L 5 HOH B 10 410 33 HOH HOH . L 5 HOH B 11 411 19 HOH HOH . L 5 HOH B 12 412 60 HOH HOH . L 5 HOH B 13 413 7 HOH HOH . L 5 HOH B 14 414 205 HOH HOH . L 5 HOH B 15 415 8 HOH HOH . L 5 HOH B 16 416 46 HOH HOH . L 5 HOH B 17 417 54 HOH HOH . L 5 HOH B 18 418 83 HOH HOH . L 5 HOH B 19 419 22 HOH HOH . L 5 HOH B 20 420 14 HOH HOH . L 5 HOH B 21 421 2 HOH HOH . L 5 HOH B 22 422 91 HOH HOH . L 5 HOH B 23 423 28 HOH HOH . L 5 HOH B 24 424 47 HOH HOH . L 5 HOH B 25 425 198 HOH HOH . L 5 HOH B 26 426 73 HOH HOH . L 5 HOH B 27 427 70 HOH HOH . L 5 HOH B 28 428 86 HOH HOH . L 5 HOH B 29 429 96 HOH HOH . L 5 HOH B 30 430 68 HOH HOH . L 5 HOH B 31 431 61 HOH HOH . L 5 HOH B 32 432 126 HOH HOH . L 5 HOH B 33 433 81 HOH HOH . L 5 HOH B 34 434 103 HOH HOH . L 5 HOH B 35 435 11 HOH HOH . L 5 HOH B 36 436 5 HOH HOH . L 5 HOH B 37 437 32 HOH HOH . L 5 HOH B 38 438 49 HOH HOH . L 5 HOH B 39 439 77 HOH HOH . L 5 HOH B 40 440 185 HOH HOH . L 5 HOH B 41 441 16 HOH HOH . L 5 HOH B 42 442 69 HOH HOH . L 5 HOH B 43 443 171 HOH HOH . L 5 HOH B 44 444 64 HOH HOH . L 5 HOH B 45 445 110 HOH HOH . L 5 HOH B 46 446 160 HOH HOH . L 5 HOH B 47 447 10 HOH HOH . L 5 HOH B 48 448 124 HOH HOH . L 5 HOH B 49 449 29 HOH HOH . L 5 HOH B 50 450 130 HOH HOH . L 5 HOH B 51 451 52 HOH HOH . L 5 HOH B 52 452 98 HOH HOH . L 5 HOH B 53 453 44 HOH HOH . L 5 HOH B 54 454 58 HOH HOH . L 5 HOH B 55 455 159 HOH HOH . L 5 HOH B 56 456 37 HOH HOH . L 5 HOH B 57 457 178 HOH HOH . L 5 HOH B 58 458 87 HOH HOH . L 5 HOH B 59 459 120 HOH HOH . L 5 HOH B 60 460 71 HOH HOH . L 5 HOH B 61 461 20 HOH HOH . L 5 HOH B 62 462 72 HOH HOH . L 5 HOH B 63 463 39 HOH HOH . L 5 HOH B 64 464 89 HOH HOH . L 5 HOH B 65 465 18 HOH HOH . L 5 HOH B 66 466 136 HOH HOH . L 5 HOH B 67 467 85 HOH HOH . L 5 HOH B 68 468 45 HOH HOH . L 5 HOH B 69 469 104 HOH HOH . L 5 HOH B 70 470 48 HOH HOH . L 5 HOH B 71 471 179 HOH HOH . L 5 HOH B 72 472 193 HOH HOH . L 5 HOH B 73 473 88 HOH HOH . L 5 HOH B 74 474 204 HOH HOH . L 5 HOH B 75 475 36 HOH HOH . L 5 HOH B 76 476 40 HOH HOH . L 5 HOH B 77 477 67 HOH HOH . L 5 HOH B 78 478 23 HOH HOH . L 5 HOH B 79 479 51 HOH HOH . L 5 HOH B 80 480 56 HOH HOH . L 5 HOH B 81 481 93 HOH HOH . L 5 HOH B 82 482 135 HOH HOH . L 5 HOH B 83 483 115 HOH HOH . L 5 HOH B 84 484 122 HOH HOH . L 5 HOH B 85 485 105 HOH HOH . L 5 HOH B 86 486 138 HOH HOH . L 5 HOH B 87 487 133 HOH HOH . L 5 HOH B 88 488 139 HOH HOH . L 5 HOH B 89 489 129 HOH HOH . L 5 HOH B 90 490 119 HOH HOH . L 5 HOH B 91 491 165 HOH HOH . L 5 HOH B 92 492 194 HOH HOH . L 5 HOH B 93 493 148 HOH HOH . L 5 HOH B 94 494 102 HOH HOH . L 5 HOH B 95 495 78 HOH HOH . L 5 HOH B 96 496 151 HOH HOH . L 5 HOH B 97 497 173 HOH HOH . L 5 HOH B 98 498 157 HOH HOH . L 5 HOH B 99 499 150 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -33.148 _atom_site.Cartn_y -15.466 _atom_site.Cartn_z 15.398 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #