data_6P07 # _model_server_result.job_id D_VMCpeK-ZO0b-ucaovMmA _model_server_result.datetime_utc '2024-10-20 03:58:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":801}' # _entry.id 6P07 # _exptl.entry_id 6P07 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P07 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 266 A THR 530 1_555 I MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc2 H O2B ATP . A ATP 801 1_555 I MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc3 B OG1 THR 266 B THR 530 1_555 K MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc4 J O2G ATP . B ATP 801 1_555 K MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc5 J O2B ATP . B ATP 801 1_555 K MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc6 C OG1 THR 266 C THR 530 1_555 M MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc7 L O1G ATP . C ATP 801 1_555 M MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc8 L O2B ATP . C ATP 801 1_555 M MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc9 D OG1 THR 266 D THR 530 1_555 O MG MG . D MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc10 N O3G ATP . D ATP 801 1_555 O MG MG . D MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc11 N O1B ATP . D ATP 801 1_555 O MG MG . D MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc12 E OG1 THR 266 E THR 530 1_555 Q MG MG . E MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc13 E OD2 ASP 318 E ASP 582 1_555 Q MG MG . E MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc14 P O2B ATP . E ATP 801 1_555 Q MG MG . E MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc15 F OG1 THR 266 F THR 530 1_555 T MG MG . F MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc16 R O1B ATP . F ATP 801 1_555 T MG MG . F MG 803 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc17 S O3B ADP . F ADP 802 1_555 T MG MG . F MG 803 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc18 S O2A ADP . F ADP 802 1_555 T MG MG . F MG 803 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.862 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6P07 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ATP A 1 801 998 ATP ATP . I 4 MG A 1 802 999 MG MG . J 3 ATP B 1 801 998 ATP ATP . K 4 MG B 1 802 999 MG MG . L 3 ATP C 1 801 998 ATP ATP . M 4 MG C 1 802 999 MG MG . N 3 ATP D 1 801 998 ATP ATP . O 4 MG D 1 802 999 MG MG . P 3 ATP E 1 801 998 ATP ATP . Q 4 MG E 1 802 999 MG MG . R 3 ATP F 1 801 997 ATP ATP . S 5 ADP F 1 802 998 ADP ADP . T 4 MG F 1 803 999 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . N 3 153.16 147.264 120.856 1 62.69 ? PG ATP 801 D 1 HETATM 2 O O1G ATP . . . N 3 153.809 145.911 120.99 1 62.69 ? O1G ATP 801 D 1 HETATM 3 O O2G ATP . . . N 3 154.027 148.421 121.272 1 62.69 ? O2G ATP 801 D 1 HETATM 4 O O3G ATP . . . N 3 151.734 147.335 121.335 1 62.69 ? O3G ATP 801 D 1 HETATM 5 P PB ATP . . . N 3 152.174 146.406 118.439 1 62.69 ? PB ATP 801 D 1 HETATM 6 O O1B ATP . . . N 3 150.849 146.191 119.12 1 62.69 ? O1B ATP 801 D 1 HETATM 7 O O2B ATP . . . N 3 153.054 145.242 118.081 1 62.69 ? O2B ATP 801 D 1 HETATM 8 O O3B ATP . . . N 3 153.036 147.453 119.28 1 62.69 ? O3B ATP 801 D 1 HETATM 9 P PA ATP . . . N 3 150.576 147.049 116.327 1 62.69 ? PA ATP 801 D 1 HETATM 10 O O1A ATP . . . N 3 149.417 147.382 117.224 1 62.69 ? O1A ATP 801 D 1 HETATM 11 O O2A ATP . . . N 3 150.663 145.699 115.689 1 62.69 ? O2A ATP 801 D 1 HETATM 12 O O3A ATP . . . N 3 151.931 147.276 117.127 1 62.69 ? O3A ATP 801 D 1 HETATM 13 O O5' ATP . . . N 3 150.633 148.175 115.199 1 62.69 ? O5' ATP 801 D 1 HETATM 14 C C5' ATP . . . N 3 149.405 148.496 114.581 1 62.69 ? C5' ATP 801 D 1 HETATM 15 C C4' ATP . . . N 3 149.68 149.334 113.353 1 62.69 ? C4' ATP 801 D 1 HETATM 16 O O4' ATP . . . N 3 150.816 148.775 112.707 1 62.69 ? O4' ATP 801 D 1 HETATM 17 C C3' ATP . . . N 3 148.523 149.305 112.387 1 62.69 ? C3' ATP 801 D 1 HETATM 18 O O3' ATP . . . N 3 148.298 150.609 111.856 1 62.69 ? O3' ATP 801 D 1 HETATM 19 C C2' ATP . . . N 3 148.964 148.338 111.316 1 62.69 ? C2' ATP 801 D 1 HETATM 20 O O2' ATP . . . N 3 148.537 148.733 110.01 1 62.69 ? O2' ATP 801 D 1 HETATM 21 C C1' ATP . . . N 3 150.471 148.319 111.406 1 62.69 ? C1' ATP 801 D 1 HETATM 22 N N9 ATP . . . N 3 151.019 146.963 111.201 1 62.69 ? N9 ATP 801 D 1 HETATM 23 C C8 ATP . . . N 3 151.969 146.411 111.967 1 62.69 ? C8 ATP 801 D 1 HETATM 24 N N7 ATP . . . N 3 152.286 145.173 111.525 1 62.69 ? N7 ATP 801 D 1 HETATM 25 C C5 ATP . . . N 3 151.536 144.927 110.45 1 62.69 ? C5 ATP 801 D 1 HETATM 26 C C6 ATP . . . N 3 151.383 143.805 109.517 1 62.69 ? C6 ATP 801 D 1 HETATM 27 N N6 ATP . . . N 3 152.127 142.699 109.683 1 62.69 ? N6 ATP 801 D 1 HETATM 28 N N1 ATP . . . N 3 150.49 143.929 108.521 1 62.69 ? N1 ATP 801 D 1 HETATM 29 C C2 ATP . . . N 3 149.752 145.043 108.376 1 62.69 ? C2 ATP 801 D 1 HETATM 30 N N3 ATP . . . N 3 149.846 146.104 109.192 1 62.69 ? N3 ATP 801 D 1 HETATM 31 C C4 ATP . . . N 3 150.707 146.109 110.23 1 62.69 ? C4 ATP 801 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #