data_6P0I
#
_model_server_result.job_id            nKkvZ0iKiHQUqgGwwQWUVA 
_model_server_result.datetime_utc      '2024-10-11 06:21:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p0i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    6P0I 
#
_exptl.entry_id    6P0I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6P0I 
_cell.length_a            64.85 
_cell.length_b            104.33 
_cell.length_c            55.24 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6P0I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OH TYR 82 B TYR 82 1_555 F S16 NL7 . B NL7 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? 
metalc ? metalc1 A OG SER 28 B SER 28 1_555 G CA CA . B CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc2 A OE2 GLU 147 B GLU 147 1_555 K NA NA . B NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc3 B O3B GDP . B GDP 401 1_555 G CA CA . B CA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc4 G CA CA . B CA 406 1_555 L O HOH . B HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc5 G CA CA . B CA 406 1_555 L O HOH . B HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc6 G CA CA . B CA 406 1_555 L O HOH . B HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc7 G CA CA . B CA 406 1_555 L O HOH . B HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc8 K NA NA . B NA 410 1_555 L O HOH . B HOH 576 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? 
metalc ? metalc9 K NA NA . B NA 410 1_555 L O HOH . B HOH 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc10 K NA NA . B NA 410 1_555 L O HOH . B HOH 618 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 189 n n 
C1 C2 GOL sing 190 n n 
C1 H11 GOL sing 191 n n 
C1 H12 GOL sing 192 n n 
O1 HO1 GOL sing 193 n n 
C2 O2 GOL sing 194 n n 
C2 C3 GOL sing 195 n n 
C2 H2 GOL sing 196 n n 
O2 HO2 GOL sing 197 n n 
C3 O3 GOL sing 198 n n 
C3 H31 GOL sing 199 n n 
C3 H32 GOL sing 200 n n 
O3 HO3 GOL sing 201 n n 
#
_atom_sites.entry_id                     6P0I 
_atom_sites.fract_transf_matrix[1][1]    0.01542 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018103 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP B 1 401 401 GDP GDP . 
C 3 EDO B 1 402 501 EDO EDO . 
D 4 ACT B 1 403 601 ACT ACT . 
E 5 GOL B 1 404 701 GOL GOL . 
F 6 NL7 B 1 405 301 NL7 LIG . 
G 7 CA B 1 406 1 CA CA . 
H 8 CL B 1 407 1 CL CL . 
I 8 CL B 1 408 3 CL CL . 
J 8 CL B 1 409 4 CL CL . 
K 9 NA B 1 410 1 NA NA . 
L 10 HOH B 1 501 193 HOH HOH . 
L 10 HOH B 2 502 194 HOH HOH . 
L 10 HOH B 3 503 184 HOH HOH . 
L 10 HOH B 4 504 173 HOH HOH . 
L 10 HOH B 5 505 168 HOH HOH . 
L 10 HOH B 6 506 158 HOH HOH . 
L 10 HOH B 7 507 107 HOH HOH . 
L 10 HOH B 8 508 128 HOH HOH . 
L 10 HOH B 9 509 135 HOH HOH . 
L 10 HOH B 10 510 112 HOH HOH . 
L 10 HOH B 11 511 105 HOH HOH . 
L 10 HOH B 12 512 131 HOH HOH . 
L 10 HOH B 13 513 132 HOH HOH . 
L 10 HOH B 14 514 146 HOH HOH . 
L 10 HOH B 15 515 80 HOH HOH . 
L 10 HOH B 16 516 172 HOH HOH . 
L 10 HOH B 17 517 102 HOH HOH . 
L 10 HOH B 18 518 152 HOH HOH . 
L 10 HOH B 19 519 110 HOH HOH . 
L 10 HOH B 20 520 162 HOH HOH . 
L 10 HOH B 21 521 29 HOH HOH . 
L 10 HOH B 22 522 195 HOH HOH . 
L 10 HOH B 23 523 98 HOH HOH . 
L 10 HOH B 24 524 136 HOH HOH . 
L 10 HOH B 25 525 73 HOH HOH . 
L 10 HOH B 26 526 103 HOH HOH . 
L 10 HOH B 27 527 5 HOH HOH . 
L 10 HOH B 28 528 32 HOH HOH . 
L 10 HOH B 29 529 108 HOH HOH . 
L 10 HOH B 30 530 45 HOH HOH . 
L 10 HOH B 31 531 42 HOH HOH . 
L 10 HOH B 32 532 70 HOH HOH . 
L 10 HOH B 33 533 104 HOH HOH . 
L 10 HOH B 34 534 2 HOH HOH . 
L 10 HOH B 35 535 122 HOH HOH . 
L 10 HOH B 36 536 24 HOH HOH . 
L 10 HOH B 37 537 12 HOH HOH . 
L 10 HOH B 38 538 39 HOH HOH . 
L 10 HOH B 39 539 57 HOH HOH . 
L 10 HOH B 40 540 109 HOH HOH . 
L 10 HOH B 41 541 62 HOH HOH . 
L 10 HOH B 42 542 118 HOH HOH . 
L 10 HOH B 43 543 36 HOH HOH . 
L 10 HOH B 44 544 38 HOH HOH . 
L 10 HOH B 45 545 137 HOH HOH . 
L 10 HOH B 46 546 66 HOH HOH . 
L 10 HOH B 47 547 79 HOH HOH . 
L 10 HOH B 48 548 15 HOH HOH . 
L 10 HOH B 49 549 52 HOH HOH . 
L 10 HOH B 50 550 10 HOH HOH . 
L 10 HOH B 51 551 101 HOH HOH . 
L 10 HOH B 52 552 165 HOH HOH . 
L 10 HOH B 53 553 140 HOH HOH . 
L 10 HOH B 54 554 47 HOH HOH . 
L 10 HOH B 55 555 25 HOH HOH . 
L 10 HOH B 56 556 54 HOH HOH . 
L 10 HOH B 57 557 59 HOH HOH . 
L 10 HOH B 58 558 46 HOH HOH . 
L 10 HOH B 59 559 113 HOH HOH . 
L 10 HOH B 60 560 142 HOH HOH . 
L 10 HOH B 61 561 28 HOH HOH . 
L 10 HOH B 62 562 31 HOH HOH . 
L 10 HOH B 63 563 4 HOH HOH . 
L 10 HOH B 64 564 71 HOH HOH . 
L 10 HOH B 65 565 94 HOH HOH . 
L 10 HOH B 66 566 53 HOH HOH . 
L 10 HOH B 67 567 23 HOH HOH . 
L 10 HOH B 68 568 3 HOH HOH . 
L 10 HOH B 69 569 145 HOH HOH . 
L 10 HOH B 70 570 87 HOH HOH . 
L 10 HOH B 71 571 18 HOH HOH . 
L 10 HOH B 72 572 56 HOH HOH . 
L 10 HOH B 73 573 138 HOH HOH . 
L 10 HOH B 74 574 19 HOH HOH . 
L 10 HOH B 75 575 159 HOH HOH . 
L 10 HOH B 76 576 65 HOH HOH . 
L 10 HOH B 77 577 58 HOH HOH . 
L 10 HOH B 78 578 161 HOH HOH . 
L 10 HOH B 79 579 1 HOH HOH . 
L 10 HOH B 80 580 151 HOH HOH . 
L 10 HOH B 81 581 26 HOH HOH . 
L 10 HOH B 82 582 99 HOH HOH . 
L 10 HOH B 83 583 7 HOH HOH . 
L 10 HOH B 84 584 6 HOH HOH . 
L 10 HOH B 85 585 13 HOH HOH . 
L 10 HOH B 86 586 48 HOH HOH . 
L 10 HOH B 87 587 9 HOH HOH . 
L 10 HOH B 88 588 89 HOH HOH . 
L 10 HOH B 89 589 41 HOH HOH . 
L 10 HOH B 90 590 22 HOH HOH . 
L 10 HOH B 91 591 81 HOH HOH . 
L 10 HOH B 92 592 55 HOH HOH . 
L 10 HOH B 93 593 67 HOH HOH . 
L 10 HOH B 94 594 88 HOH HOH . 
L 10 HOH B 95 595 69 HOH HOH . 
L 10 HOH B 96 596 27 HOH HOH . 
L 10 HOH B 97 597 74 HOH HOH . 
L 10 HOH B 98 598 37 HOH HOH . 
L 10 HOH B 99 599 83 HOH HOH . 
L 10 HOH B 100 600 185 HOH HOH . 
L 10 HOH B 101 601 198 HOH HOH . 
L 10 HOH B 102 602 155 HOH HOH . 
L 10 HOH B 103 603 17 HOH HOH . 
L 10 HOH B 104 604 64 HOH HOH . 
L 10 HOH B 105 605 92 HOH HOH . 
L 10 HOH B 106 606 68 HOH HOH . 
L 10 HOH B 107 607 150 HOH HOH . 
L 10 HOH B 108 608 35 HOH HOH . 
L 10 HOH B 109 609 20 HOH HOH . 
L 10 HOH B 110 610 182 HOH HOH . 
L 10 HOH B 111 611 117 HOH HOH . 
L 10 HOH B 112 612 100 HOH HOH . 
L 10 HOH B 113 613 189 HOH HOH . 
L 10 HOH B 114 614 133 HOH HOH . 
L 10 HOH B 115 615 72 HOH HOH . 
L 10 HOH B 116 616 82 HOH HOH . 
L 10 HOH B 117 617 96 HOH HOH . 
L 10 HOH B 118 618 50 HOH HOH . 
L 10 HOH B 119 619 143 HOH HOH . 
L 10 HOH B 120 620 8 HOH HOH . 
L 10 HOH B 121 621 43 HOH HOH . 
L 10 HOH B 122 622 200 HOH HOH . 
L 10 HOH B 123 623 76 HOH HOH . 
L 10 HOH B 124 624 60 HOH HOH . 
L 10 HOH B 125 625 97 HOH HOH . 
L 10 HOH B 126 626 134 HOH HOH . 
L 10 HOH B 127 627 121 HOH HOH . 
L 10 HOH B 128 628 111 HOH HOH . 
L 10 HOH B 129 629 11 HOH HOH . 
L 10 HOH B 130 630 49 HOH HOH . 
L 10 HOH B 131 631 14 HOH HOH . 
L 10 HOH B 132 632 30 HOH HOH . 
L 10 HOH B 133 633 147 HOH HOH . 
L 10 HOH B 134 634 115 HOH HOH . 
L 10 HOH B 135 635 21 HOH HOH . 
L 10 HOH B 136 636 16 HOH HOH . 
L 10 HOH B 137 637 34 HOH HOH . 
L 10 HOH B 138 638 174 HOH HOH . 
L 10 HOH B 139 639 40 HOH HOH . 
L 10 HOH B 140 640 78 HOH HOH . 
L 10 HOH B 141 641 61 HOH HOH . 
L 10 HOH B 142 642 123 HOH HOH . 
L 10 HOH B 143 643 95 HOH HOH . 
L 10 HOH B 144 644 153 HOH HOH . 
L 10 HOH B 145 645 180 HOH HOH . 
L 10 HOH B 146 646 183 HOH HOH . 
L 10 HOH B 147 647 157 HOH HOH . 
L 10 HOH B 148 648 125 HOH HOH . 
L 10 HOH B 149 649 167 HOH HOH . 
L 10 HOH B 150 650 154 HOH HOH . 
L 10 HOH B 151 651 63 HOH HOH . 
L 10 HOH B 152 652 171 HOH HOH . 
L 10 HOH B 153 653 197 HOH HOH . 
L 10 HOH B 154 654 156 HOH HOH . 
L 10 HOH B 155 655 187 HOH HOH . 
L 10 HOH B 156 656 188 HOH HOH . 
L 10 HOH B 157 657 93 HOH HOH . 
L 10 HOH B 158 658 33 HOH HOH . 
L 10 HOH B 159 659 127 HOH HOH . 
L 10 HOH B 160 660 160 HOH HOH . 
L 10 HOH B 161 661 86 HOH HOH . 
L 10 HOH B 162 662 106 HOH HOH . 
L 10 HOH B 163 663 126 HOH HOH . 
L 10 HOH B 164 664 178 HOH HOH . 
L 10 HOH B 165 665 130 HOH HOH . 
L 10 HOH B 166 666 90 HOH HOH . 
L 10 HOH B 167 667 191 HOH HOH . 
L 10 HOH B 168 668 85 HOH HOH . 
L 10 HOH B 169 669 91 HOH HOH . 
L 10 HOH B 170 670 129 HOH HOH . 
L 10 HOH B 171 671 176 HOH HOH . 
L 10 HOH B 172 672 148 HOH HOH . 
L 10 HOH B 173 673 84 HOH HOH . 
L 10 HOH B 174 674 186 HOH HOH . 
L 10 HOH B 175 675 164 HOH HOH . 
L 10 HOH B 176 676 51 HOH HOH . 
L 10 HOH B 177 677 181 HOH HOH . 
L 10 HOH B 178 678 163 HOH HOH . 
L 10 HOH B 179 679 77 HOH HOH . 
L 10 HOH B 180 680 192 HOH HOH . 
L 10 HOH B 181 681 179 HOH HOH . 
L 10 HOH B 182 682 44 HOH HOH . 
L 10 HOH B 183 683 199 HOH HOH . 
L 10 HOH B 184 684 141 HOH HOH . 
L 10 HOH B 185 685 170 HOH HOH . 
L 10 HOH B 186 686 75 HOH HOH . 
L 10 HOH B 187 687 144 HOH HOH . 
L 10 HOH B 188 688 166 HOH HOH . 
L 10 HOH B 189 689 177 HOH HOH . 
L 10 HOH B 190 690 119 HOH HOH . 
L 10 HOH B 191 691 120 HOH HOH . 
L 10 HOH B 192 692 149 HOH HOH . 
L 10 HOH B 193 693 190 HOH HOH . 
L 10 HOH B 194 694 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 15.258 -3.787 0.639 1 21.96 ? C1 GOL 404 B 1 
HETATM 2 O O1 GOL . . . E 5 14.544 -3.711 1.827 1 17.58 ? O1 GOL 404 B 1 
HETATM 3 C C2 GOL . . . E 5 15.809 -2.395 0.451 1 23.82 ? C2 GOL 404 B 1 
HETATM 4 O O2 GOL . . . E 5 16.844 -2.138 1.333 1 22.34 ? O2 GOL 404 B 1 
HETATM 5 C C3 GOL . . . E 5 16.212 -2.242 -0.983 1 25.25 ? C3 GOL 404 B 1 
HETATM 6 O O3 GOL . . . E 5 16.417 -0.903 -1.105 1 17.33 ? O3 GOL 404 B 1 
HETATM 7 H H11 GOL . . . E 5 14.71 -4.036 -0.122 1 26.35 ? H11 GOL 404 B 1 
HETATM 8 H H12 GOL . . . E 5 15.981 -4.432 0.668 1 26.35 ? H12 GOL 404 B 1 
HETATM 9 H HO1 GOL . . . E 5 15.127 -3.694 2.4 1 21.1 ? HO1 GOL 404 B 1 
HETATM 10 H H2 GOL . . . E 5 15.11 -1.75 0.64 1 28.58 ? H2 GOL 404 B 1 
HETATM 11 H HO2 GOL . . . E 5 17.315 -2.853 1.393 1 26.81 ? HO2 GOL 404 B 1 
HETATM 12 H H31 GOL . . . E 5 15.518 -2.592 -1.563 1 30.31 ? H31 GOL 404 B 1 
HETATM 13 H H32 GOL . . . E 5 16.997 -2.782 -1.168 1 30.31 ? H32 GOL 404 B 1 
HETATM 14 H HO3 GOL . . . E 5 16.449 -0.65 -0.346 1 20.8 ? HO3 GOL 404 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#