data_6P0R # _model_server_result.job_id '_Zji9h1T8Gx4R-2UqrD8tg' _model_server_result.datetime_utc '2024-12-27 02:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p0r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6P0R # _exptl.entry_id 6P0R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.959 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description (3S)-1-[2-(5-chloro-2,4-dimethoxyphenyl)imidazo[1,2-a]pyridin-7-yl]-N-[(pyridin-4-yl)methyl]pyrrolidin-3-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.17 _cell.angle_gamma 90 _cell.entry_id 6P0R _cell.length_a 146.701 _cell.length_b 63.388 _cell.length_c 65.616 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P0R _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 80 A CYS 191 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A SG CYS 80 A CYS 191 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc3 A SG CYS 82 A CYS 193 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 A SG CYS 85 A CYS 196 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 A SG CYS 85 A CYS 196 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc6 A SG CYS 90 A CYS 201 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc7 A SG CYS 91 A CYS 202 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc8 A SG CYS 118 A CYS 229 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc9 A SG CYS 118 A CYS 229 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc10 A SG CYS 122 A CYS 233 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc11 A SG CYS 124 A CYS 235 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc12 A SG CYS 128 A CYS 239 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc13 A SG CYS 222 A CYS 333 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc14 A SG CYS 287 A CYS 398 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc15 A SG CYS 289 A CYS 400 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc16 A SG CYS 294 A CYS 405 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc17 B SG CYS 80 B CYS 191 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc18 B SG CYS 80 B CYS 191 1_555 K ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc19 B SG CYS 82 B CYS 193 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc20 B SG CYS 85 B CYS 196 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc21 B SG CYS 85 B CYS 196 1_555 L ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc22 B SG CYS 90 B CYS 201 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc23 B SG CYS 91 B CYS 202 1_555 K ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc24 B SG CYS 118 B CYS 229 1_555 K ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc25 B SG CYS 118 B CYS 229 1_555 L ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc26 B SG CYS 122 B CYS 233 1_555 K ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc27 B SG CYS 124 B CYS 235 1_555 L ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc28 B SG CYS 128 B CYS 239 1_555 L ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'C25 H26 Cl N5 O2' _chem_comp.formula_weight 463.959 _chem_comp.id NM4 _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-1-[2-(5-chloro-2,4-dimethoxyphenyl)imidazo[1,2-a]pyridin-7-yl]-N-[(pyridin-4-yl)methyl]pyrrolidin-3-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 NM4 doub 237 n y C24 N NM4 sing 238 n y C23 C12 NM4 sing 239 n y C9 N NM4 sing 240 n y C9 C8 NM4 doub 241 n y C22 C15 NM4 sing 242 n n C22 N1 NM4 sing 243 n n N C10 NM4 sing 244 n y CL C5 NM4 sing 245 n n C12 N1 NM4 sing 246 n n C12 C11 NM4 doub 247 n y C15 N2 NM4 sing 248 n n C15 C14 NM4 sing 249 n n C6 C5 NM4 doub 250 n y C6 C7 NM4 sing 251 n y N1 C13 NM4 sing 252 n n C8 C7 NM4 sing 253 n n C8 N4 NM4 sing 254 n y C5 C1 NM4 sing 255 n y C10 C11 NM4 sing 256 n y C10 N4 NM4 doub 257 n y C7 C3 NM4 doub 258 n y C14 C13 NM4 sing 259 n n C1 O NM4 sing 260 n n C1 C2 NM4 doub 261 n y O C NM4 sing 262 n n C3 C2 NM4 sing 263 n y C3 O1 NM4 sing 264 n n O1 C4 NM4 sing 265 n n N2 H1 NM4 sing 266 n n C4 H4 NM4 sing 267 n n C4 H5 NM4 sing 268 n n C4 H6 NM4 sing 269 n n C6 H7 NM4 sing 270 n n C11 H8 NM4 sing 271 n n C14 H9 NM4 sing 272 n n C14 H10 NM4 sing 273 n n C15 H11 NM4 sing 274 n n C22 H12 NM4 sing 275 n n C22 H13 NM4 sing 276 n n C23 H14 NM4 sing 277 n n C24 H15 NM4 sing 278 n n C H16 NM4 sing 279 n n C H17 NM4 sing 280 n n C H18 NM4 sing 281 n n C2 H19 NM4 sing 282 n n C9 H20 NM4 sing 283 n n C13 H21 NM4 sing 284 n n C13 H22 NM4 sing 285 n n N2 C16 NM4 sing 286 n n C16 C17 NM4 sing 287 n n C17 C18 NM4 sing 288 n y C18 C19 NM4 doub 289 n y C19 N3 NM4 sing 290 n y N3 C21 NM4 doub 291 n y C21 C25 NM4 sing 292 n y C25 C17 NM4 doub 293 n y C16 H2 NM4 sing 294 n n C16 H3 NM4 sing 295 n n C18 H23 NM4 sing 296 n n C19 H24 NM4 sing 297 n n C21 H25 NM4 sing 298 n n C25 H26 NM4 sing 299 n n # _atom_sites.entry_id 6P0R _atom_sites.fract_transf_matrix[1][1] 0.006817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002917 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NM4 A 1 501 1000 NM4 SUV . D 3 ZN A 1 502 2001 ZN ZN . E 3 ZN A 1 503 2002 ZN ZN . F 3 ZN A 1 504 2003 ZN ZN . G 3 ZN A 1 505 2004 ZN ZN . H 4 UNX A 1 506 1002 UNX UNX . I 2 NM4 B 1 501 1000 NM4 SUV . J 3 ZN B 1 502 2002 ZN ZN . K 3 ZN B 1 503 2003 ZN ZN . L 3 ZN B 1 504 2004 ZN ZN . M 4 UNX B 1 505 1001 UNX UNX . N 5 HOH A 1 601 14 HOH HOH . N 5 HOH A 2 602 5 HOH HOH . N 5 HOH A 3 603 25 HOH HOH . N 5 HOH A 4 604 43 HOH HOH . N 5 HOH A 5 605 20 HOH HOH . N 5 HOH A 6 606 1 HOH HOH . N 5 HOH A 7 607 12 HOH HOH . N 5 HOH A 8 608 19 HOH HOH . N 5 HOH A 9 609 13 HOH HOH . N 5 HOH A 10 610 34 HOH HOH . N 5 HOH A 11 611 37 HOH HOH . N 5 HOH A 12 612 3 HOH HOH . N 5 HOH A 13 613 31 HOH HOH . N 5 HOH A 14 614 2 HOH HOH . N 5 HOH A 15 615 11 HOH HOH . N 5 HOH A 16 616 6 HOH HOH . N 5 HOH A 17 617 42 HOH HOH . N 5 HOH A 18 618 8 HOH HOH . N 5 HOH A 19 619 30 HOH HOH . N 5 HOH A 20 620 33 HOH HOH . N 5 HOH A 21 621 26 HOH HOH . N 5 HOH A 22 622 18 HOH HOH . N 5 HOH A 23 623 27 HOH HOH . N 5 HOH A 24 624 4 HOH HOH . N 5 HOH A 25 625 44 HOH HOH . N 5 HOH A 26 626 41 HOH HOH . N 5 HOH A 27 627 29 HOH HOH . N 5 HOH A 28 628 24 HOH HOH . N 5 HOH A 29 629 32 HOH HOH . O 5 HOH B 1 601 9 HOH HOH . O 5 HOH B 2 602 10 HOH HOH . O 5 HOH B 3 603 7 HOH HOH . O 5 HOH B 4 604 17 HOH HOH . O 5 HOH B 5 605 40 HOH HOH . O 5 HOH B 6 606 16 HOH HOH . O 5 HOH B 7 607 15 HOH HOH . O 5 HOH B 8 608 39 HOH HOH . O 5 HOH B 9 609 22 HOH HOH . O 5 HOH B 10 610 38 HOH HOH . O 5 HOH B 11 611 21 HOH HOH . O 5 HOH B 12 612 23 HOH HOH . O 5 HOH B 13 613 35 HOH HOH . O 5 HOH B 14 614 28 HOH HOH . O 5 HOH B 15 615 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NM4 . . . C 2 43.411 5.354 28.319 1 37.66 ? C1 NM4 501 A 1 HETATM 2 N N1 NM4 . . . C 2 52.744 9.08 26.814 1 46.3 ? N1 NM4 501 A 1 HETATM 3 O O1 NM4 . . . C 2 46.84 5.836 29.63 1 39.53 ? O1 NM4 501 A 1 HETATM 4 N N2 NM4 . . . C 2 55.066 11.355 27.08 1 49.17 ? N2 NM4 501 A 1 HETATM 5 C C3 NM4 . . . C 2 45.737 5.815 28.814 1 37.88 ? C3 NM4 501 A 1 HETATM 6 C C4 NM4 . . . C 2 46.723 5.333 30.97 1 38.66 ? C4 NM4 501 A 1 HETATM 7 N N4 NM4 . . . C 2 48.274 7.085 27.89 1 38.11 ? N4 NM4 501 A 1 HETATM 8 C C5 NM4 . . . C 2 43.596 5.911 27.056 1 35.93 ? C5 NM4 501 A 1 HETATM 9 C C6 NM4 . . . C 2 44.818 6.414 26.667 1 35.23 ? C6 NM4 501 A 1 HETATM 10 C C7 NM4 . . . C 2 45.916 6.371 27.527 1 36.81 ? C7 NM4 501 A 1 HETATM 11 C C8 NM4 . . . C 2 47.203 6.907 27.032 1 37.29 ? C8 NM4 501 A 1 HETATM 12 C C11 NM4 . . . C 2 50.547 8.11 27.528 1 40.66 ? C11 NM4 501 A 1 HETATM 13 C C12 NM4 . . . C 2 51.356 8.709 26.54 1 42.56 ? C12 NM4 501 A 1 HETATM 14 C C14 NM4 . . . C 2 54.896 8.969 27.746 1 47.73 ? C14 NM4 501 A 1 HETATM 15 C C15 NM4 . . . C 2 54.941 9.967 26.6 1 48.82 ? C15 NM4 501 A 1 HETATM 16 C C22 NM4 . . . C 2 53.642 9.692 25.831 1 47.87 ? C22 NM4 501 A 1 HETATM 17 C C23 NM4 . . . C 2 50.794 8.899 25.236 1 41.01 ? C23 NM4 501 A 1 HETATM 18 C C24 NM4 . . . C 2 49.551 8.516 24.898 1 39.29 ? C24 NM4 501 A 1 HETATM 19 CL CL NM4 . . . C 2 42.273 5.971 25.942 1 35.37 ? CL NM4 501 A 1 HETATM 20 O O NM4 . . . C 2 42.15 4.902 28.606 1 37.55 ? O NM4 501 A 1 HETATM 21 C C NM4 . . . C 2 41.972 4.089 29.774 1 38.51 ? C NM4 501 A 1 HETATM 22 C C2 NM4 . . . C 2 44.492 5.308 29.197 1 37.93 ? C2 NM4 501 A 1 HETATM 23 C C10 NM4 . . . C 2 49.219 7.685 27.165 1 40.73 ? C10 NM4 501 A 1 HETATM 24 N N NM4 . . . C 2 48.775 7.893 25.863 1 39.06 ? N NM4 501 A 1 HETATM 25 C C9 NM4 . . . C 2 47.505 7.375 25.78 1 37.65 ? C9 NM4 501 A 1 HETATM 26 C C13 NM4 . . . C 2 53.418 8.899 28.108 1 47.72 ? C13 NM4 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #