data_6P0Y # _model_server_result.job_id fwA6KhlU-xNMAzqgNjiBFA _model_server_result.datetime_utc '2025-03-13 21:06:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p0y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 6P0Y # _exptl.entry_id 6P0Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P0Y _cell.length_a 133.465 _cell.length_b 105.305 _cell.length_c 83.453 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 133.465 105.305 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 B SG CYS 312 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 312 A CYS 312 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 513 A CYS 513 1_555 A SG CYS 517 A CYS 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 513 B CYS 513 1_555 B SG CYS 517 B CYS 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc1 A OD1 ASN 76 A ASN 76 1_555 E K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc2 A OG SER 78 A SER 78 1_555 E K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc3 A OD1 ASP 109 A ASP 109 1_555 E K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc4 A O THR 110 A THR 110 1_555 E K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc5 C O3B ADP . A ADP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc6 C O2A ADP . A ADP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc7 D MG MG . A MG 602 1_555 K O HOH . A HOH 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc8 D MG MG . A MG 602 1_555 K O HOH . A HOH 789 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc9 B OD1 ASN 76 B ASN 76 1_555 I K K . B K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc10 B OG SER 78 B SER 78 1_555 I K K . B K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc11 B OD1 ASP 109 B ASP 109 1_555 I K K . B K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc12 B O THR 110 B THR 110 1_555 I K K . B K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc13 G O2B ADP . B ADP 601 1_555 H MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc14 G O1A ADP . B ADP 601 1_555 H MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc15 H MG MG . B MG 602 1_555 L O HOH . B HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc16 H MG MG . B MG 602 1_555 L O HOH . B HOH 774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc17 I K K . B K 603 1_555 L O HOH . B HOH 780 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6P0Y _atom_sites.fract_transf_matrix[1][1] 0.007493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 601 601 ADP ADP . D 3 MG A 1 602 701 MG MG . E 4 K A 1 603 801 K K . F 5 CL A 1 604 802 CL CL . G 2 ADP B 1 601 601 ADP ADP . H 3 MG B 1 602 701 MG MG . I 4 K B 1 603 801 K K . J 5 CL B 1 604 802 CL CL . K 6 HOH A 1 701 120 HOH HOH . K 6 HOH A 2 702 106 HOH HOH . K 6 HOH A 3 703 76 HOH HOH . K 6 HOH A 4 704 97 HOH HOH . K 6 HOH A 5 705 167 HOH HOH . K 6 HOH A 6 706 94 HOH HOH . K 6 HOH A 7 707 1 HOH HOH . K 6 HOH A 8 708 141 HOH HOH . K 6 HOH A 9 709 52 HOH HOH . K 6 HOH A 10 710 121 HOH HOH . K 6 HOH A 11 711 71 HOH HOH . K 6 HOH A 12 712 109 HOH HOH . K 6 HOH A 13 713 175 HOH HOH . K 6 HOH A 14 714 204 HOH HOH . K 6 HOH A 15 715 27 HOH HOH . K 6 HOH A 16 716 157 HOH HOH . K 6 HOH A 17 717 95 HOH HOH . K 6 HOH A 18 718 42 HOH HOH . K 6 HOH A 19 719 73 HOH HOH . K 6 HOH A 20 720 189 HOH HOH . K 6 HOH A 21 721 132 HOH HOH . K 6 HOH A 22 722 70 HOH HOH . K 6 HOH A 23 723 222 HOH HOH . K 6 HOH A 24 724 199 HOH HOH . K 6 HOH A 25 725 68 HOH HOH . K 6 HOH A 26 726 66 HOH HOH . K 6 HOH A 27 727 16 HOH HOH . K 6 HOH A 28 728 9 HOH HOH . K 6 HOH A 29 729 14 HOH HOH . K 6 HOH A 30 730 25 HOH HOH . K 6 HOH A 31 731 29 HOH HOH . K 6 HOH A 32 732 142 HOH HOH . K 6 HOH A 33 733 169 HOH HOH . K 6 HOH A 34 734 24 HOH HOH . K 6 HOH A 35 735 119 HOH HOH . K 6 HOH A 36 736 180 HOH HOH . K 6 HOH A 37 737 99 HOH HOH . K 6 HOH A 38 738 17 HOH HOH . K 6 HOH A 39 739 8 HOH HOH . K 6 HOH A 40 740 45 HOH HOH . K 6 HOH A 41 741 202 HOH HOH . K 6 HOH A 42 742 137 HOH HOH . K 6 HOH A 43 743 162 HOH HOH . K 6 HOH A 44 744 110 HOH HOH . K 6 HOH A 45 745 89 HOH HOH . K 6 HOH A 46 746 149 HOH HOH . K 6 HOH A 47 747 26 HOH HOH . K 6 HOH A 48 748 19 HOH HOH . K 6 HOH A 49 749 174 HOH HOH . K 6 HOH A 50 750 51 HOH HOH . K 6 HOH A 51 751 57 HOH HOH . K 6 HOH A 52 752 205 HOH HOH . K 6 HOH A 53 753 209 HOH HOH . K 6 HOH A 54 754 179 HOH HOH . K 6 HOH A 55 755 74 HOH HOH . K 6 HOH A 56 756 31 HOH HOH . K 6 HOH A 57 757 127 HOH HOH . K 6 HOH A 58 758 164 HOH HOH . K 6 HOH A 59 759 32 HOH HOH . K 6 HOH A 60 760 117 HOH HOH . K 6 HOH A 61 761 28 HOH HOH . K 6 HOH A 62 762 191 HOH HOH . K 6 HOH A 63 763 35 HOH HOH . K 6 HOH A 64 764 50 HOH HOH . K 6 HOH A 65 765 145 HOH HOH . K 6 HOH A 66 766 41 HOH HOH . K 6 HOH A 67 767 105 HOH HOH . K 6 HOH A 68 768 123 HOH HOH . K 6 HOH A 69 769 195 HOH HOH . K 6 HOH A 70 770 188 HOH HOH . K 6 HOH A 71 771 219 HOH HOH . K 6 HOH A 72 772 212 HOH HOH . K 6 HOH A 73 773 172 HOH HOH . K 6 HOH A 74 774 69 HOH HOH . K 6 HOH A 75 775 223 HOH HOH . K 6 HOH A 76 776 38 HOH HOH . K 6 HOH A 77 777 13 HOH HOH . K 6 HOH A 78 778 129 HOH HOH . K 6 HOH A 79 779 218 HOH HOH . K 6 HOH A 80 780 82 HOH HOH . K 6 HOH A 81 781 143 HOH HOH . K 6 HOH A 82 782 216 HOH HOH . K 6 HOH A 83 783 102 HOH HOH . K 6 HOH A 84 784 206 HOH HOH . K 6 HOH A 85 785 203 HOH HOH . K 6 HOH A 86 786 7 HOH HOH . K 6 HOH A 87 787 21 HOH HOH . K 6 HOH A 88 788 128 HOH HOH . K 6 HOH A 89 789 107 HOH HOH . K 6 HOH A 90 790 115 HOH HOH . K 6 HOH A 91 791 49 HOH HOH . K 6 HOH A 92 792 185 HOH HOH . K 6 HOH A 93 793 112 HOH HOH . K 6 HOH A 94 794 168 HOH HOH . K 6 HOH A 95 795 170 HOH HOH . K 6 HOH A 96 796 161 HOH HOH . L 6 HOH B 1 701 96 HOH HOH . L 6 HOH B 2 702 113 HOH HOH . L 6 HOH B 3 703 122 HOH HOH . L 6 HOH B 4 704 23 HOH HOH . L 6 HOH B 5 705 101 HOH HOH . L 6 HOH B 6 706 65 HOH HOH . L 6 HOH B 7 707 136 HOH HOH . L 6 HOH B 8 708 55 HOH HOH . L 6 HOH B 9 709 151 HOH HOH . L 6 HOH B 10 710 139 HOH HOH . L 6 HOH B 11 711 103 HOH HOH . L 6 HOH B 12 712 59 HOH HOH . L 6 HOH B 13 713 67 HOH HOH . L 6 HOH B 14 714 156 HOH HOH . L 6 HOH B 15 715 215 HOH HOH . L 6 HOH B 16 716 4 HOH HOH . L 6 HOH B 17 717 43 HOH HOH . L 6 HOH B 18 718 98 HOH HOH . L 6 HOH B 19 719 44 HOH HOH . L 6 HOH B 20 720 3 HOH HOH . L 6 HOH B 21 721 86 HOH HOH . L 6 HOH B 22 722 58 HOH HOH . L 6 HOH B 23 723 207 HOH HOH . L 6 HOH B 24 724 20 HOH HOH . L 6 HOH B 25 725 34 HOH HOH . L 6 HOH B 26 726 56 HOH HOH . L 6 HOH B 27 727 173 HOH HOH . L 6 HOH B 28 728 150 HOH HOH . L 6 HOH B 29 729 53 HOH HOH . L 6 HOH B 30 730 148 HOH HOH . L 6 HOH B 31 731 178 HOH HOH . L 6 HOH B 32 732 63 HOH HOH . L 6 HOH B 33 733 135 HOH HOH . L 6 HOH B 34 734 93 HOH HOH . L 6 HOH B 35 735 15 HOH HOH . L 6 HOH B 36 736 196 HOH HOH . L 6 HOH B 37 737 22 HOH HOH . L 6 HOH B 38 738 100 HOH HOH . L 6 HOH B 39 739 125 HOH HOH . L 6 HOH B 40 740 46 HOH HOH . L 6 HOH B 41 741 85 HOH HOH . L 6 HOH B 42 742 220 HOH HOH . L 6 HOH B 43 743 221 HOH HOH . L 6 HOH B 44 744 79 HOH HOH . L 6 HOH B 45 745 171 HOH HOH . L 6 HOH B 46 746 10 HOH HOH . L 6 HOH B 47 747 116 HOH HOH . L 6 HOH B 48 748 198 HOH HOH . L 6 HOH B 49 749 81 HOH HOH . L 6 HOH B 50 750 37 HOH HOH . L 6 HOH B 51 751 75 HOH HOH . L 6 HOH B 52 752 18 HOH HOH . L 6 HOH B 53 753 155 HOH HOH . L 6 HOH B 54 754 87 HOH HOH . L 6 HOH B 55 755 83 HOH HOH . L 6 HOH B 56 756 33 HOH HOH . L 6 HOH B 57 757 84 HOH HOH . L 6 HOH B 58 758 214 HOH HOH . L 6 HOH B 59 759 158 HOH HOH . L 6 HOH B 60 760 183 HOH HOH . L 6 HOH B 61 761 72 HOH HOH . L 6 HOH B 62 762 60 HOH HOH . L 6 HOH B 63 763 104 HOH HOH . L 6 HOH B 64 764 5 HOH HOH . L 6 HOH B 65 765 211 HOH HOH . L 6 HOH B 66 766 194 HOH HOH . L 6 HOH B 67 767 90 HOH HOH . L 6 HOH B 68 768 62 HOH HOH . L 6 HOH B 69 769 187 HOH HOH . L 6 HOH B 70 770 177 HOH HOH . L 6 HOH B 71 771 163 HOH HOH . L 6 HOH B 72 772 224 HOH HOH . L 6 HOH B 73 773 48 HOH HOH . L 6 HOH B 74 774 176 HOH HOH . L 6 HOH B 75 775 134 HOH HOH . L 6 HOH B 76 776 36 HOH HOH . L 6 HOH B 77 777 92 HOH HOH . L 6 HOH B 78 778 108 HOH HOH . L 6 HOH B 79 779 181 HOH HOH . L 6 HOH B 80 780 11 HOH HOH . L 6 HOH B 81 781 140 HOH HOH . L 6 HOH B 82 782 54 HOH HOH . L 6 HOH B 83 783 39 HOH HOH . L 6 HOH B 84 784 124 HOH HOH . L 6 HOH B 85 785 225 HOH HOH . L 6 HOH B 86 786 2 HOH HOH . L 6 HOH B 87 787 133 HOH HOH . L 6 HOH B 88 788 192 HOH HOH . L 6 HOH B 89 789 6 HOH HOH . L 6 HOH B 90 790 40 HOH HOH . L 6 HOH B 91 791 213 HOH HOH . L 6 HOH B 92 792 64 HOH HOH . L 6 HOH B 93 793 12 HOH HOH . L 6 HOH B 94 794 47 HOH HOH . L 6 HOH B 95 795 118 HOH HOH . L 6 HOH B 96 796 182 HOH HOH . L 6 HOH B 97 797 208 HOH HOH . L 6 HOH B 98 798 144 HOH HOH . L 6 HOH B 99 799 88 HOH HOH . L 6 HOH B 100 800 154 HOH HOH . L 6 HOH B 101 801 210 HOH HOH . L 6 HOH B 102 802 159 HOH HOH . L 6 HOH B 103 803 193 HOH HOH . L 6 HOH B 104 804 190 HOH HOH . L 6 HOH B 105 805 111 HOH HOH . L 6 HOH B 106 806 201 HOH HOH . L 6 HOH B 107 807 30 HOH HOH . L 6 HOH B 108 808 80 HOH HOH . L 6 HOH B 109 809 61 HOH HOH . L 6 HOH B 110 810 166 HOH HOH . L 6 HOH B 111 811 197 HOH HOH . L 6 HOH B 112 812 146 HOH HOH . L 6 HOH B 113 813 160 HOH HOH . L 6 HOH B 114 814 130 HOH HOH . L 6 HOH B 115 815 165 HOH HOH . L 6 HOH B 116 816 77 HOH HOH . L 6 HOH B 117 817 147 HOH HOH . L 6 HOH B 118 818 200 HOH HOH . L 6 HOH B 119 819 153 HOH HOH . L 6 HOH B 120 820 126 HOH HOH . L 6 HOH B 121 821 152 HOH HOH . L 6 HOH B 122 822 184 HOH HOH . L 6 HOH B 123 823 91 HOH HOH . L 6 HOH B 124 824 217 HOH HOH . L 6 HOH B 125 825 114 HOH HOH . L 6 HOH B 126 826 78 HOH HOH . L 6 HOH B 127 827 186 HOH HOH . L 6 HOH B 128 828 131 HOH HOH . L 6 HOH B 129 829 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 105.457 _atom_site.Cartn_y 64.071 _atom_site.Cartn_z 33.64 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #