data_6P10
#
_model_server_result.job_id            alxU7kZGUwoUdLTdP5Rlyw 
_model_server_result.datetime_utc      '2024-11-15 06:02:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6p10 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":803}' 
#
_entry.id    6P10 
#
_exptl.entry_id    6P10 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6P10 
_cell.length_a            79.393 
_cell.length_b            79.393 
_cell.length_c            97.261 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6P10 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     6P10 
_atom_sites.fract_transf_matrix[1][1]    0.012596 
_atom_sites.fract_transf_matrix[1][2]    0.007272 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014544 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010282 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 B 1 801 1 SO4 SO4 . 
C 3 SKE B 1 802 1 SKE JNJ . 
D 4 MPD B 1 803 1 MPD MPD . 
E 5 HOH B 1 901 19 HOH HOH . 
E 5 HOH B 2 902 5 HOH HOH . 
E 5 HOH B 3 903 18 HOH HOH . 
E 5 HOH B 4 904 10 HOH HOH . 
E 5 HOH B 5 905 20 HOH HOH . 
E 5 HOH B 6 906 8 HOH HOH . 
E 5 HOH B 7 907 26 HOH HOH . 
E 5 HOH B 8 908 1 HOH HOH . 
E 5 HOH B 9 909 2 HOH HOH . 
E 5 HOH B 10 910 6 HOH HOH . 
E 5 HOH B 11 911 9 HOH HOH . 
E 5 HOH B 12 912 11 HOH HOH . 
E 5 HOH B 13 913 33 HOH HOH . 
E 5 HOH B 14 914 4 HOH HOH . 
E 5 HOH B 15 915 12 HOH HOH . 
E 5 HOH B 16 916 17 HOH HOH . 
E 5 HOH B 17 917 16 HOH HOH . 
E 5 HOH B 18 918 3 HOH HOH . 
E 5 HOH B 19 919 25 HOH HOH . 
E 5 HOH B 20 920 22 HOH HOH . 
E 5 HOH B 21 921 27 HOH HOH . 
E 5 HOH B 22 922 21 HOH HOH . 
E 5 HOH B 23 923 7 HOH HOH . 
E 5 HOH B 24 924 13 HOH HOH . 
E 5 HOH B 25 925 28 HOH HOH . 
E 5 HOH B 26 926 15 HOH HOH . 
E 5 HOH B 27 927 31 HOH HOH . 
E 5 HOH B 28 928 14 HOH HOH . 
E 5 HOH B 29 929 24 HOH HOH . 
E 5 HOH B 30 930 29 HOH HOH . 
E 5 HOH B 31 931 35 HOH HOH . 
E 5 HOH B 32 932 23 HOH HOH . 
E 5 HOH B 33 933 30 HOH HOH . 
E 5 HOH B 34 934 32 HOH HOH . 
E 5 HOH B 35 935 36 HOH HOH . 
E 5 HOH B 36 936 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 4 -19.253 -7.039 9.071 1 71.7 ? C1 MPD 803 B 1 
HETATM 2 C C2 MPD . . . D 4 -18.095 -7.704 9.809 1 88.7 ? C2 MPD 803 B 1 
HETATM 3 O O2 MPD . . . D 4 -16.872 -7.395 9.09 1 80.09 ? O2 MPD 803 B 1 
HETATM 4 C CM MPD . . . D 4 -17.976 -7.149 11.224 1 72 ? CM MPD 803 B 1 
HETATM 5 C C3 MPD . . . D 4 -18.311 -9.217 9.883 1 87.74 ? C3 MPD 803 B 1 
HETATM 6 C C4 MPD . . . D 4 -17.217 -10.06 9.225 1 79.16 ? C4 MPD 803 B 1 
HETATM 7 O O4 MPD . . . D 4 -16.812 -9.491 8 1 79.07 ? O4 MPD 803 B 1 
HETATM 8 C C5 MPD . . . D 4 -16.013 -10.217 10.152 1 62.72 ? C5 MPD 803 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#