data_6P12 # _model_server_result.job_id TNp-AL4VYqSZx8lNLXKBNQ _model_server_result.datetime_utc '2024-10-14 07:25:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 6P12 # _exptl.entry_id 6P12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6P12 _cell.length_a 80.672 _cell.length_b 80.672 _cell.length_c 96.529 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 6P12 _atom_sites.fract_transf_matrix[1][1] 0.012396 _atom_sites.fract_transf_matrix[1][2] 0.007157 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NKY B 1 801 1 NKY 160 . C 3 SO4 B 1 802 2 SO4 SO4 . D 4 MPD B 1 803 1 MPD MPD . E 5 HOH B 1 901 89 HOH HOH . E 5 HOH B 2 902 161 HOH HOH . E 5 HOH B 3 903 76 HOH HOH . E 5 HOH B 4 904 124 HOH HOH . E 5 HOH B 5 905 215 HOH HOH . E 5 HOH B 6 906 60 HOH HOH . E 5 HOH B 7 907 55 HOH HOH . E 5 HOH B 8 908 197 HOH HOH . E 5 HOH B 9 909 34 HOH HOH . E 5 HOH B 10 910 164 HOH HOH . E 5 HOH B 11 911 130 HOH HOH . E 5 HOH B 12 912 209 HOH HOH . E 5 HOH B 13 913 210 HOH HOH . E 5 HOH B 14 914 163 HOH HOH . E 5 HOH B 15 915 28 HOH HOH . E 5 HOH B 16 916 73 HOH HOH . E 5 HOH B 17 917 13 HOH HOH . E 5 HOH B 18 918 81 HOH HOH . E 5 HOH B 19 919 109 HOH HOH . E 5 HOH B 20 920 117 HOH HOH . E 5 HOH B 21 921 113 HOH HOH . E 5 HOH B 22 922 102 HOH HOH . E 5 HOH B 23 923 190 HOH HOH . E 5 HOH B 24 924 59 HOH HOH . E 5 HOH B 25 925 1 HOH HOH . E 5 HOH B 26 926 2 HOH HOH . E 5 HOH B 27 927 77 HOH HOH . E 5 HOH B 28 928 64 HOH HOH . E 5 HOH B 29 929 133 HOH HOH . E 5 HOH B 30 930 51 HOH HOH . E 5 HOH B 31 931 12 HOH HOH . E 5 HOH B 32 932 204 HOH HOH . E 5 HOH B 33 933 47 HOH HOH . E 5 HOH B 34 934 91 HOH HOH . E 5 HOH B 35 935 22 HOH HOH . E 5 HOH B 36 936 6 HOH HOH . E 5 HOH B 37 937 96 HOH HOH . E 5 HOH B 38 938 16 HOH HOH . E 5 HOH B 39 939 33 HOH HOH . E 5 HOH B 40 940 10 HOH HOH . E 5 HOH B 41 941 166 HOH HOH . E 5 HOH B 42 942 86 HOH HOH . E 5 HOH B 43 943 83 HOH HOH . E 5 HOH B 44 944 65 HOH HOH . E 5 HOH B 45 945 203 HOH HOH . E 5 HOH B 46 946 29 HOH HOH . E 5 HOH B 47 947 8 HOH HOH . E 5 HOH B 48 948 198 HOH HOH . E 5 HOH B 49 949 4 HOH HOH . E 5 HOH B 50 950 48 HOH HOH . E 5 HOH B 51 951 184 HOH HOH . E 5 HOH B 52 952 70 HOH HOH . E 5 HOH B 53 953 5 HOH HOH . E 5 HOH B 54 954 3 HOH HOH . E 5 HOH B 55 955 170 HOH HOH . E 5 HOH B 56 956 123 HOH HOH . E 5 HOH B 57 957 57 HOH HOH . E 5 HOH B 58 958 14 HOH HOH . E 5 HOH B 59 959 186 HOH HOH . E 5 HOH B 60 960 15 HOH HOH . E 5 HOH B 61 961 11 HOH HOH . E 5 HOH B 62 962 54 HOH HOH . E 5 HOH B 63 963 17 HOH HOH . E 5 HOH B 64 964 56 HOH HOH . E 5 HOH B 65 965 39 HOH HOH . E 5 HOH B 66 966 9 HOH HOH . E 5 HOH B 67 967 84 HOH HOH . E 5 HOH B 68 968 140 HOH HOH . E 5 HOH B 69 969 121 HOH HOH . E 5 HOH B 70 970 31 HOH HOH . E 5 HOH B 71 971 218 HOH HOH . E 5 HOH B 72 972 106 HOH HOH . E 5 HOH B 73 973 212 HOH HOH . E 5 HOH B 74 974 62 HOH HOH . E 5 HOH B 75 975 125 HOH HOH . E 5 HOH B 76 976 43 HOH HOH . E 5 HOH B 77 977 44 HOH HOH . E 5 HOH B 78 978 175 HOH HOH . E 5 HOH B 79 979 66 HOH HOH . E 5 HOH B 80 980 75 HOH HOH . E 5 HOH B 81 981 90 HOH HOH . E 5 HOH B 82 982 27 HOH HOH . E 5 HOH B 83 983 52 HOH HOH . E 5 HOH B 84 984 35 HOH HOH . E 5 HOH B 85 985 147 HOH HOH . E 5 HOH B 86 986 160 HOH HOH . E 5 HOH B 87 987 30 HOH HOH . E 5 HOH B 88 988 110 HOH HOH . E 5 HOH B 89 989 46 HOH HOH . E 5 HOH B 90 990 40 HOH HOH . E 5 HOH B 91 991 42 HOH HOH . E 5 HOH B 92 992 74 HOH HOH . E 5 HOH B 93 993 219 HOH HOH . E 5 HOH B 94 994 87 HOH HOH . E 5 HOH B 95 995 104 HOH HOH . E 5 HOH B 96 996 58 HOH HOH . E 5 HOH B 97 997 24 HOH HOH . E 5 HOH B 98 998 36 HOH HOH . E 5 HOH B 99 999 72 HOH HOH . E 5 HOH B 100 1000 95 HOH HOH . E 5 HOH B 101 1001 191 HOH HOH . E 5 HOH B 102 1002 19 HOH HOH . E 5 HOH B 103 1003 71 HOH HOH . E 5 HOH B 104 1004 142 HOH HOH . E 5 HOH B 105 1005 7 HOH HOH . E 5 HOH B 106 1006 116 HOH HOH . E 5 HOH B 107 1007 21 HOH HOH . E 5 HOH B 108 1008 67 HOH HOH . E 5 HOH B 109 1009 45 HOH HOH . E 5 HOH B 110 1010 108 HOH HOH . E 5 HOH B 111 1011 188 HOH HOH . E 5 HOH B 112 1012 122 HOH HOH . E 5 HOH B 113 1013 131 HOH HOH . E 5 HOH B 114 1014 20 HOH HOH . E 5 HOH B 115 1015 37 HOH HOH . E 5 HOH B 116 1016 25 HOH HOH . E 5 HOH B 117 1017 69 HOH HOH . E 5 HOH B 118 1018 173 HOH HOH . E 5 HOH B 119 1019 26 HOH HOH . E 5 HOH B 120 1020 18 HOH HOH . E 5 HOH B 121 1021 82 HOH HOH . E 5 HOH B 122 1022 112 HOH HOH . E 5 HOH B 123 1023 168 HOH HOH . E 5 HOH B 124 1024 49 HOH HOH . E 5 HOH B 125 1025 107 HOH HOH . E 5 HOH B 126 1026 189 HOH HOH . E 5 HOH B 127 1027 155 HOH HOH . E 5 HOH B 128 1028 179 HOH HOH . E 5 HOH B 129 1029 146 HOH HOH . E 5 HOH B 130 1030 128 HOH HOH . E 5 HOH B 131 1031 171 HOH HOH . E 5 HOH B 132 1032 201 HOH HOH . E 5 HOH B 133 1033 151 HOH HOH . E 5 HOH B 134 1034 132 HOH HOH . E 5 HOH B 135 1035 129 HOH HOH . E 5 HOH B 136 1036 50 HOH HOH . E 5 HOH B 137 1037 134 HOH HOH . E 5 HOH B 138 1038 114 HOH HOH . E 5 HOH B 139 1039 118 HOH HOH . E 5 HOH B 140 1040 138 HOH HOH . E 5 HOH B 141 1041 156 HOH HOH . E 5 HOH B 142 1042 213 HOH HOH . E 5 HOH B 143 1043 162 HOH HOH . E 5 HOH B 144 1044 23 HOH HOH . E 5 HOH B 145 1045 93 HOH HOH . E 5 HOH B 146 1046 200 HOH HOH . E 5 HOH B 147 1047 181 HOH HOH . E 5 HOH B 148 1048 53 HOH HOH . E 5 HOH B 149 1049 135 HOH HOH . E 5 HOH B 150 1050 199 HOH HOH . E 5 HOH B 151 1051 111 HOH HOH . E 5 HOH B 152 1052 214 HOH HOH . E 5 HOH B 153 1053 141 HOH HOH . E 5 HOH B 154 1054 154 HOH HOH . E 5 HOH B 155 1055 205 HOH HOH . E 5 HOH B 156 1056 38 HOH HOH . E 5 HOH B 157 1057 196 HOH HOH . E 5 HOH B 158 1058 139 HOH HOH . E 5 HOH B 159 1059 222 HOH HOH . E 5 HOH B 160 1060 178 HOH HOH . E 5 HOH B 161 1061 98 HOH HOH . E 5 HOH B 162 1062 149 HOH HOH . E 5 HOH B 163 1063 127 HOH HOH . E 5 HOH B 164 1064 172 HOH HOH . E 5 HOH B 165 1065 145 HOH HOH . E 5 HOH B 166 1066 174 HOH HOH . E 5 HOH B 167 1067 103 HOH HOH . E 5 HOH B 168 1068 120 HOH HOH . E 5 HOH B 169 1069 167 HOH HOH . E 5 HOH B 170 1070 92 HOH HOH . E 5 HOH B 171 1071 192 HOH HOH . E 5 HOH B 172 1072 143 HOH HOH . E 5 HOH B 173 1073 115 HOH HOH . E 5 HOH B 174 1074 157 HOH HOH . E 5 HOH B 175 1075 159 HOH HOH . E 5 HOH B 176 1076 153 HOH HOH . E 5 HOH B 177 1077 148 HOH HOH . E 5 HOH B 178 1078 88 HOH HOH . E 5 HOH B 179 1079 220 HOH HOH . E 5 HOH B 180 1080 97 HOH HOH . E 5 HOH B 181 1081 78 HOH HOH . E 5 HOH B 182 1082 144 HOH HOH . E 5 HOH B 183 1083 85 HOH HOH . E 5 HOH B 184 1084 202 HOH HOH . E 5 HOH B 185 1085 165 HOH HOH . E 5 HOH B 186 1086 100 HOH HOH . E 5 HOH B 187 1087 221 HOH HOH . E 5 HOH B 188 1088 152 HOH HOH . E 5 HOH B 189 1089 79 HOH HOH . E 5 HOH B 190 1090 126 HOH HOH . E 5 HOH B 191 1091 61 HOH HOH . E 5 HOH B 192 1092 194 HOH HOH . E 5 HOH B 193 1093 80 HOH HOH . E 5 HOH B 194 1094 158 HOH HOH . E 5 HOH B 195 1095 176 HOH HOH . E 5 HOH B 196 1096 101 HOH HOH . E 5 HOH B 197 1097 137 HOH HOH . E 5 HOH B 198 1098 99 HOH HOH . E 5 HOH B 199 1099 185 HOH HOH . E 5 HOH B 200 1100 150 HOH HOH . E 5 HOH B 201 1101 32 HOH HOH . E 5 HOH B 202 1102 211 HOH HOH . E 5 HOH B 203 1103 207 HOH HOH . E 5 HOH B 204 1104 41 HOH HOH . E 5 HOH B 205 1105 136 HOH HOH . E 5 HOH B 206 1106 195 HOH HOH . E 5 HOH B 207 1107 208 HOH HOH . E 5 HOH B 208 1108 206 HOH HOH . E 5 HOH B 209 1109 63 HOH HOH . E 5 HOH B 210 1110 180 HOH HOH . E 5 HOH B 211 1111 216 HOH HOH . E 5 HOH B 212 1112 68 HOH HOH . E 5 HOH B 213 1113 169 HOH HOH . E 5 HOH B 214 1114 182 HOH HOH . E 5 HOH B 215 1115 119 HOH HOH . E 5 HOH B 216 1116 217 HOH HOH . E 5 HOH B 217 1117 177 HOH HOH . E 5 HOH B 218 1118 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 4 18.86 -6.959 -6.599 1 59.77 ? C1 MPD 803 B 1 HETATM 2 C C2 MPD . . . D 4 17.668 -7.381 -5.748 1 74.75 ? C2 MPD 803 B 1 HETATM 3 O O2 MPD . . . D 4 17.899 -6.953 -4.382 1 82.15 ? O2 MPD 803 B 1 HETATM 4 C CM MPD . . . D 4 16.397 -6.714 -6.257 1 69.95 ? CM MPD 803 B 1 HETATM 5 C C3 MPD . . . D 4 17.505 -8.897 -5.786 1 73.24 ? C3 MPD 803 B 1 HETATM 6 C C4 MPD . . . D 4 18.147 -9.59 -4.588 1 79.55 ? C4 MPD 803 B 1 HETATM 7 O O4 MPD . . . D 4 19.066 -8.728 -3.952 1 82.79 ? O4 MPD 803 B 1 HETATM 8 C C5 MPD . . . D 4 17.077 -10.031 -3.595 1 60.98 ? C5 MPD 803 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #