data_6P13 # _model_server_result.job_id y05mZH0jySuaYdklYmGohQ _model_server_result.datetime_utc '2024-11-15 05:40:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 6P13 # _exptl.entry_id 6P13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6P13 _cell.length_a 79.698 _cell.length_b 79.698 _cell.length_c 96.873 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 6P13 _atom_sites.fract_transf_matrix[1][1] 0.012547 _atom_sites.fract_transf_matrix[1][2] 0.007244 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 B 1 801 1 SO4 SO4 . C 3 NKY B 1 802 1 NKY 160 . D 4 MPD B 1 803 1 MPD MPD . E 5 HOH B 1 901 15 HOH HOH . E 5 HOH B 2 902 32 HOH HOH . E 5 HOH B 3 903 9 HOH HOH . E 5 HOH B 4 904 54 HOH HOH . E 5 HOH B 5 905 19 HOH HOH . E 5 HOH B 6 906 34 HOH HOH . E 5 HOH B 7 907 40 HOH HOH . E 5 HOH B 8 908 97 HOH HOH . E 5 HOH B 9 909 3 HOH HOH . E 5 HOH B 10 910 69 HOH HOH . E 5 HOH B 11 911 51 HOH HOH . E 5 HOH B 12 912 44 HOH HOH . E 5 HOH B 13 913 1 HOH HOH . E 5 HOH B 14 914 64 HOH HOH . E 5 HOH B 15 915 100 HOH HOH . E 5 HOH B 16 916 28 HOH HOH . E 5 HOH B 17 917 14 HOH HOH . E 5 HOH B 18 918 30 HOH HOH . E 5 HOH B 19 919 12 HOH HOH . E 5 HOH B 20 920 23 HOH HOH . E 5 HOH B 21 921 18 HOH HOH . E 5 HOH B 22 922 53 HOH HOH . E 5 HOH B 23 923 7 HOH HOH . E 5 HOH B 24 924 20 HOH HOH . E 5 HOH B 25 925 56 HOH HOH . E 5 HOH B 26 926 57 HOH HOH . E 5 HOH B 27 927 93 HOH HOH . E 5 HOH B 28 928 4 HOH HOH . E 5 HOH B 29 929 41 HOH HOH . E 5 HOH B 30 930 36 HOH HOH . E 5 HOH B 31 931 22 HOH HOH . E 5 HOH B 32 932 62 HOH HOH . E 5 HOH B 33 933 2 HOH HOH . E 5 HOH B 34 934 66 HOH HOH . E 5 HOH B 35 935 61 HOH HOH . E 5 HOH B 36 936 21 HOH HOH . E 5 HOH B 37 937 82 HOH HOH . E 5 HOH B 38 938 48 HOH HOH . E 5 HOH B 39 939 63 HOH HOH . E 5 HOH B 40 940 60 HOH HOH . E 5 HOH B 41 941 72 HOH HOH . E 5 HOH B 42 942 35 HOH HOH . E 5 HOH B 43 943 10 HOH HOH . E 5 HOH B 44 944 27 HOH HOH . E 5 HOH B 45 945 16 HOH HOH . E 5 HOH B 46 946 6 HOH HOH . E 5 HOH B 47 947 58 HOH HOH . E 5 HOH B 48 948 52 HOH HOH . E 5 HOH B 49 949 45 HOH HOH . E 5 HOH B 50 950 13 HOH HOH . E 5 HOH B 51 951 99 HOH HOH . E 5 HOH B 52 952 11 HOH HOH . E 5 HOH B 53 953 73 HOH HOH . E 5 HOH B 54 954 39 HOH HOH . E 5 HOH B 55 955 8 HOH HOH . E 5 HOH B 56 956 75 HOH HOH . E 5 HOH B 57 957 26 HOH HOH . E 5 HOH B 58 958 24 HOH HOH . E 5 HOH B 59 959 108 HOH HOH . E 5 HOH B 60 960 17 HOH HOH . E 5 HOH B 61 961 38 HOH HOH . E 5 HOH B 62 962 31 HOH HOH . E 5 HOH B 63 963 70 HOH HOH . E 5 HOH B 64 964 105 HOH HOH . E 5 HOH B 65 965 5 HOH HOH . E 5 HOH B 66 966 29 HOH HOH . E 5 HOH B 67 967 47 HOH HOH . E 5 HOH B 68 968 49 HOH HOH . E 5 HOH B 69 969 59 HOH HOH . E 5 HOH B 70 970 92 HOH HOH . E 5 HOH B 71 971 33 HOH HOH . E 5 HOH B 72 972 46 HOH HOH . E 5 HOH B 73 973 67 HOH HOH . E 5 HOH B 74 974 37 HOH HOH . E 5 HOH B 75 975 87 HOH HOH . E 5 HOH B 76 976 80 HOH HOH . E 5 HOH B 77 977 71 HOH HOH . E 5 HOH B 78 978 77 HOH HOH . E 5 HOH B 79 979 86 HOH HOH . E 5 HOH B 80 980 83 HOH HOH . E 5 HOH B 81 981 25 HOH HOH . E 5 HOH B 82 982 50 HOH HOH . E 5 HOH B 83 983 101 HOH HOH . E 5 HOH B 84 984 96 HOH HOH . E 5 HOH B 85 985 90 HOH HOH . E 5 HOH B 86 986 78 HOH HOH . E 5 HOH B 87 987 104 HOH HOH . E 5 HOH B 88 988 79 HOH HOH . E 5 HOH B 89 989 85 HOH HOH . E 5 HOH B 90 990 103 HOH HOH . E 5 HOH B 91 991 84 HOH HOH . E 5 HOH B 92 992 76 HOH HOH . E 5 HOH B 93 993 95 HOH HOH . E 5 HOH B 94 994 43 HOH HOH . E 5 HOH B 95 995 106 HOH HOH . E 5 HOH B 96 996 42 HOH HOH . E 5 HOH B 97 997 107 HOH HOH . E 5 HOH B 98 998 91 HOH HOH . E 5 HOH B 99 999 65 HOH HOH . E 5 HOH B 100 1000 81 HOH HOH . E 5 HOH B 101 1001 55 HOH HOH . E 5 HOH B 102 1002 68 HOH HOH . E 5 HOH B 103 1003 88 HOH HOH . E 5 HOH B 104 1004 94 HOH HOH . E 5 HOH B 105 1005 98 HOH HOH . E 5 HOH B 106 1006 74 HOH HOH . E 5 HOH B 107 1007 102 HOH HOH . E 5 HOH B 108 1008 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 4 58.344 76.257 6.726 1 70.66 ? C1 MPD 803 B 1 HETATM 2 C C2 MPD . . . D 4 57.776 76.39 5.318 1 77.31 ? C2 MPD 803 B 1 HETATM 3 O O2 MPD . . . D 4 58.71 75.774 4.395 1 77.81 ? O2 MPD 803 B 1 HETATM 4 C CM MPD . . . D 4 56.445 75.649 5.224 1 67.29 ? CM MPD 803 B 1 HETATM 5 C C3 MPD . . . D 4 57.65 77.867 4.949 1 78.18 ? C3 MPD 803 B 1 HETATM 6 C C4 MPD . . . D 4 56.213 78.293 4.663 1 78.88 ? C4 MPD 803 B 1 HETATM 7 O O4 MPD . . . D 4 55.714 79 5.776 1 78.76 ? O4 MPD 803 B 1 HETATM 8 C C5 MPD . . . D 4 56.135 79.173 3.422 1 73.92 ? C5 MPD 803 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 627 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #