data_6P2B # _model_server_result.job_id Io25KyKLKHwC6B1CcHQvxQ _model_server_result.datetime_utc '2024-11-19 14:43:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6P2B # _exptl.entry_id 6P2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.588 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2Z,6E,10E)-13-[(2R)-6-hydroxy-2,8-dimethyl-3,4-dihydro-2H-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,6,10-trienoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P2B _cell.length_a 84.992 _cell.length_b 89.547 _cell.length_c 107.531 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C27 H38 O4' _chem_comp.formula_weight 426.588 _chem_comp.id NQD _chem_comp.mon_nstd_flag . _chem_comp.name '(2Z,6E,10E)-13-[(2R)-6-hydroxy-2,8-dimethyl-3,4-dihydro-2H-1-benzopyran-2-yl]-2,6,10-trimethyltrideca-2,6,10-trienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'garcinoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C04 NQD sing 246 n n C05 C06 NQD doub 247 z n C07 C06 NQD sing 248 n n C03 C04 NQD sing 249 n n C03 C02 NQD sing 250 n n C06 C08 NQD sing 251 n n C02 C11 NQD doub 252 e n C02 C01 NQD sing 253 n n C11 C12 NQD sing 254 n n C08 O09 NQD doub 255 n n C08 O10 NQD sing 256 n n C12 C13 NQD sing 257 n n C13 C14 NQD sing 258 n n C15 C14 NQD sing 259 n n C14 C16 NQD doub 260 e n O31 C25 NQD sing 261 n n C26 C25 NQD doub 262 n y C26 C27 NQD sing 263 n y C25 C24 NQD sing 264 n y C30 C27 NQD sing 265 n n C27 C28 NQD doub 266 n y C16 C17 NQD sing 267 n n C24 C23 NQD doub 268 n y C28 C23 NQD sing 269 n y C28 O29 NQD sing 270 n n C17 C18 NQD sing 271 n n C23 C22 NQD sing 272 n n O29 C19 NQD sing 273 n n C22 C21 NQD sing 274 n n C18 C19 NQD sing 275 n n C21 C19 NQD sing 276 n n C19 C20 NQD sing 277 n n C12 H1 NQD sing 278 n n C12 H2 NQD sing 279 n n C11 H3 NQD sing 280 n n C01 H4 NQD sing 281 n n C01 H5 NQD sing 282 n n C01 H6 NQD sing 283 n n C03 H7 NQD sing 284 n n C03 H8 NQD sing 285 n n C04 H9 NQD sing 286 n n C04 H10 NQD sing 287 n n C05 H11 NQD sing 288 n n C07 H12 NQD sing 289 n n C07 H13 NQD sing 290 n n C07 H14 NQD sing 291 n n C13 H15 NQD sing 292 n n C13 H16 NQD sing 293 n n C15 H17 NQD sing 294 n n C15 H18 NQD sing 295 n n C15 H19 NQD sing 296 n n C16 H20 NQD sing 297 n n C17 H21 NQD sing 298 n n C17 H22 NQD sing 299 n n C18 H23 NQD sing 300 n n C18 H24 NQD sing 301 n n C20 H25 NQD sing 302 n n C20 H26 NQD sing 303 n n C20 H27 NQD sing 304 n n C21 H28 NQD sing 305 n n C21 H29 NQD sing 306 n n C22 H30 NQD sing 307 n n C22 H31 NQD sing 308 n n C24 H32 NQD sing 309 n n C26 H33 NQD sing 310 n n C30 H34 NQD sing 311 n n C30 H35 NQD sing 312 n n C30 H36 NQD sing 313 n n O10 H37 NQD sing 314 n n O31 H38 NQD sing 315 n n # _atom_sites.entry_id 6P2B _atom_sites.fract_transf_matrix[1][1] 0.011766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NQD A 1 501 4 NQD GCA . D 3 DMS A 1 502 1 DMS DMS . E 2 NQD B 1 501 3 NQD GCA . F 3 DMS B 1 502 2 DMS DMS . G 3 DMS B 1 503 3 DMS DMS . H 4 HOH A 1 601 37 HOH HOH . H 4 HOH A 2 602 39 HOH HOH . H 4 HOH A 3 603 106 HOH HOH . H 4 HOH A 4 604 9 HOH HOH . H 4 HOH A 5 605 124 HOH HOH . H 4 HOH A 6 606 22 HOH HOH . H 4 HOH A 7 607 78 HOH HOH . H 4 HOH A 8 608 17 HOH HOH . H 4 HOH A 9 609 4 HOH HOH . H 4 HOH A 10 610 19 HOH HOH . H 4 HOH A 11 611 16 HOH HOH . H 4 HOH A 12 612 98 HOH HOH . H 4 HOH A 13 613 95 HOH HOH . H 4 HOH A 14 614 42 HOH HOH . H 4 HOH A 15 615 91 HOH HOH . H 4 HOH A 16 616 20 HOH HOH . H 4 HOH A 17 617 86 HOH HOH . H 4 HOH A 18 618 47 HOH HOH . H 4 HOH A 19 619 26 HOH HOH . H 4 HOH A 20 620 11 HOH HOH . H 4 HOH A 21 621 23 HOH HOH . H 4 HOH A 22 622 43 HOH HOH . H 4 HOH A 23 623 58 HOH HOH . H 4 HOH A 24 624 54 HOH HOH . H 4 HOH A 25 625 2 HOH HOH . H 4 HOH A 26 626 99 HOH HOH . H 4 HOH A 27 627 55 HOH HOH . H 4 HOH A 28 628 108 HOH HOH . H 4 HOH A 29 629 76 HOH HOH . H 4 HOH A 30 630 88 HOH HOH . H 4 HOH A 31 631 8 HOH HOH . H 4 HOH A 32 632 44 HOH HOH . H 4 HOH A 33 633 122 HOH HOH . H 4 HOH A 34 634 21 HOH HOH . H 4 HOH A 35 635 113 HOH HOH . H 4 HOH A 36 636 56 HOH HOH . H 4 HOH A 37 637 67 HOH HOH . H 4 HOH A 38 638 79 HOH HOH . H 4 HOH A 39 639 69 HOH HOH . H 4 HOH A 40 640 49 HOH HOH . H 4 HOH A 41 641 101 HOH HOH . H 4 HOH A 42 642 40 HOH HOH . H 4 HOH A 43 643 18 HOH HOH . H 4 HOH A 44 644 50 HOH HOH . H 4 HOH A 45 645 104 HOH HOH . H 4 HOH A 46 646 32 HOH HOH . H 4 HOH A 47 647 12 HOH HOH . H 4 HOH A 48 648 94 HOH HOH . H 4 HOH A 49 649 107 HOH HOH . H 4 HOH A 50 650 48 HOH HOH . H 4 HOH A 51 651 66 HOH HOH . H 4 HOH A 52 652 6 HOH HOH . H 4 HOH A 53 653 52 HOH HOH . H 4 HOH A 54 654 90 HOH HOH . H 4 HOH A 55 655 29 HOH HOH . H 4 HOH A 56 656 105 HOH HOH . H 4 HOH A 57 657 30 HOH HOH . H 4 HOH A 58 658 77 HOH HOH . H 4 HOH A 59 659 80 HOH HOH . H 4 HOH A 60 660 27 HOH HOH . H 4 HOH A 61 661 38 HOH HOH . H 4 HOH A 62 662 84 HOH HOH . H 4 HOH A 63 663 73 HOH HOH . H 4 HOH A 64 664 120 HOH HOH . H 4 HOH A 65 665 127 HOH HOH . I 4 HOH B 1 601 85 HOH HOH . I 4 HOH B 2 602 60 HOH HOH . I 4 HOH B 3 603 126 HOH HOH . I 4 HOH B 4 604 74 HOH HOH . I 4 HOH B 5 605 82 HOH HOH . I 4 HOH B 6 606 59 HOH HOH . I 4 HOH B 7 607 10 HOH HOH . I 4 HOH B 8 608 72 HOH HOH . I 4 HOH B 9 609 111 HOH HOH . I 4 HOH B 10 610 24 HOH HOH . I 4 HOH B 11 611 3 HOH HOH . I 4 HOH B 12 612 34 HOH HOH . I 4 HOH B 13 613 15 HOH HOH . I 4 HOH B 14 614 96 HOH HOH . I 4 HOH B 15 615 118 HOH HOH . I 4 HOH B 16 616 53 HOH HOH . I 4 HOH B 17 617 35 HOH HOH . I 4 HOH B 18 618 31 HOH HOH . I 4 HOH B 19 619 83 HOH HOH . I 4 HOH B 20 620 1 HOH HOH . I 4 HOH B 21 621 63 HOH HOH . I 4 HOH B 22 622 87 HOH HOH . I 4 HOH B 23 623 121 HOH HOH . I 4 HOH B 24 624 41 HOH HOH . I 4 HOH B 25 625 64 HOH HOH . I 4 HOH B 26 626 33 HOH HOH . I 4 HOH B 27 627 7 HOH HOH . I 4 HOH B 28 628 13 HOH HOH . I 4 HOH B 29 629 28 HOH HOH . I 4 HOH B 30 630 75 HOH HOH . I 4 HOH B 31 631 97 HOH HOH . I 4 HOH B 32 632 46 HOH HOH . I 4 HOH B 33 633 61 HOH HOH . I 4 HOH B 34 634 51 HOH HOH . I 4 HOH B 35 635 100 HOH HOH . I 4 HOH B 36 636 25 HOH HOH . I 4 HOH B 37 637 36 HOH HOH . I 4 HOH B 38 638 115 HOH HOH . I 4 HOH B 39 639 93 HOH HOH . I 4 HOH B 40 640 5 HOH HOH . I 4 HOH B 41 641 81 HOH HOH . I 4 HOH B 42 642 109 HOH HOH . I 4 HOH B 43 643 114 HOH HOH . I 4 HOH B 44 644 71 HOH HOH . I 4 HOH B 45 645 117 HOH HOH . I 4 HOH B 46 646 14 HOH HOH . I 4 HOH B 47 647 65 HOH HOH . I 4 HOH B 48 648 57 HOH HOH . I 4 HOH B 49 649 62 HOH HOH . I 4 HOH B 50 650 70 HOH HOH . I 4 HOH B 51 651 92 HOH HOH . I 4 HOH B 52 652 45 HOH HOH . I 4 HOH B 53 653 125 HOH HOH . I 4 HOH B 54 654 116 HOH HOH . I 4 HOH B 55 655 103 HOH HOH . I 4 HOH B 56 656 68 HOH HOH . I 4 HOH B 57 657 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 NQD . . . C 2 11.607 35.988 22.022 0.9 60.09 ? C12 NQD 501 A 1 HETATM 2 C C11 NQD . . . C 2 10.899 35.146 20.946 0.9 59.05 ? C11 NQD 501 A 1 HETATM 3 C C01 NQD . . . C 2 8.745 36.291 21.484 0.9 60.7 ? C01 NQD 501 A 1 HETATM 4 C C02 NQD . . . C 2 9.587 35.273 20.704 0.9 62.54 ? C02 NQD 501 A 1 HETATM 5 C C03 NQD . . . C 2 8.933 34.384 19.626 0.9 61.38 ? C03 NQD 501 A 1 HETATM 6 C C04 NQD . . . C 2 9.062 32.892 19.918 0.9 57.15 ? C04 NQD 501 A 1 HETATM 7 C C05 NQD . . . C 2 10.471 32.43 19.541 0.9 66.09 ? C05 NQD 501 A 1 HETATM 8 C C06 NQD . . . C 2 11.103 31.412 20.099 0.9 62.74 ? C06 NQD 501 A 1 HETATM 9 C C07 NQD . . . C 2 12.508 31.094 19.589 0.9 58.81 ? C07 NQD 501 A 1 HETATM 10 C C08 NQD . . . C 2 10.514 30.531 21.213 0.9 61.33 ? C08 NQD 501 A 1 HETATM 11 C C13 NQD . . . C 2 11.938 34.978 23.135 0.9 56.19 ? C13 NQD 501 A 1 HETATM 12 C C14 NQD . . . C 2 13.045 35.404 24.127 0.9 62.54 ? C14 NQD 501 A 1 HETATM 13 C C15 NQD . . . C 2 14.228 36.261 23.686 0.9 65.93 ? C15 NQD 501 A 1 HETATM 14 C C16 NQD . . . C 2 12.916 34.986 25.39 0.9 56.46 ? C16 NQD 501 A 1 HETATM 15 C C17 NQD . . . C 2 13.918 35.273 26.515 0.9 55.92 ? C17 NQD 501 A 1 HETATM 16 C C18 NQD . . . C 2 13.278 34.796 27.84 0.9 54.94 ? C18 NQD 501 A 1 HETATM 17 C C19 NQD . . . C 2 13.488 33.31 28.256 0.9 54.04 ? C19 NQD 501 A 1 HETATM 18 C C20 NQD . . . C 2 12.735 33.695 29.558 0.9 55.36 ? C20 NQD 501 A 1 HETATM 19 C C21 NQD . . . C 2 14.971 33.576 28.136 0.9 57.85 ? C21 NQD 501 A 1 HETATM 20 C C22 NQD . . . C 2 15.627 32.29 27.728 0.9 50.6 ? C22 NQD 501 A 1 HETATM 21 C C23 NQD . . . C 2 14.79 31.593 26.638 0.9 52.98 ? C23 NQD 501 A 1 HETATM 22 C C24 NQD . . . C 2 15.461 30.614 25.89 0.9 53.97 ? C24 NQD 501 A 1 HETATM 23 C C25 NQD . . . C 2 14.792 29.925 24.89 0.9 58 ? C25 NQD 501 A 1 HETATM 24 C C26 NQD . . . C 2 13.434 30.201 24.613 0.9 57.64 ? C26 NQD 501 A 1 HETATM 25 C C27 NQD . . . C 2 12.759 31.183 25.352 0.9 55.79 ? C27 NQD 501 A 1 HETATM 26 C C28 NQD . . . C 2 13.442 31.884 26.375 0.9 53.46 ? C28 NQD 501 A 1 HETATM 27 C C30 NQD . . . C 2 11.289 31.492 25.039 0.9 56.49 ? C30 NQD 501 A 1 HETATM 28 O O09 NQD . . . C 2 10.897 29.341 21.322 0.9 57.41 ? O09 NQD 501 A 1 HETATM 29 O O10 NQD . . . C 2 9.666 30.956 22.04 0.9 67.5 ? O10 NQD 501 A 1 HETATM 30 O O29 NQD . . . C 2 12.735 32.901 27.132 0.9 51.94 ? O29 NQD 501 A 1 HETATM 31 O O31 NQD . . . C 2 15.491 28.966 24.165 0.9 54.03 ? O31 NQD 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #