data_6P2B # _model_server_result.job_id YtFtgONUDIdpeOBhXkgnTg _model_server_result.datetime_utc '2024-11-19 14:50:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6p2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6P2B # _exptl.entry_id 6P2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6P2B _cell.length_a 84.992 _cell.length_b 89.547 _cell.length_c 107.531 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6P2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6P2B _atom_sites.fract_transf_matrix[1][1] 0.011766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NQD A 1 501 4 NQD GCA . D 3 DMS A 1 502 1 DMS DMS . E 2 NQD B 1 501 3 NQD GCA . F 3 DMS B 1 502 2 DMS DMS . G 3 DMS B 1 503 3 DMS DMS . H 4 HOH A 1 601 37 HOH HOH . H 4 HOH A 2 602 39 HOH HOH . H 4 HOH A 3 603 106 HOH HOH . H 4 HOH A 4 604 9 HOH HOH . H 4 HOH A 5 605 124 HOH HOH . H 4 HOH A 6 606 22 HOH HOH . H 4 HOH A 7 607 78 HOH HOH . H 4 HOH A 8 608 17 HOH HOH . H 4 HOH A 9 609 4 HOH HOH . H 4 HOH A 10 610 19 HOH HOH . H 4 HOH A 11 611 16 HOH HOH . H 4 HOH A 12 612 98 HOH HOH . H 4 HOH A 13 613 95 HOH HOH . H 4 HOH A 14 614 42 HOH HOH . H 4 HOH A 15 615 91 HOH HOH . H 4 HOH A 16 616 20 HOH HOH . H 4 HOH A 17 617 86 HOH HOH . H 4 HOH A 18 618 47 HOH HOH . H 4 HOH A 19 619 26 HOH HOH . H 4 HOH A 20 620 11 HOH HOH . H 4 HOH A 21 621 23 HOH HOH . H 4 HOH A 22 622 43 HOH HOH . H 4 HOH A 23 623 58 HOH HOH . H 4 HOH A 24 624 54 HOH HOH . H 4 HOH A 25 625 2 HOH HOH . H 4 HOH A 26 626 99 HOH HOH . H 4 HOH A 27 627 55 HOH HOH . H 4 HOH A 28 628 108 HOH HOH . H 4 HOH A 29 629 76 HOH HOH . H 4 HOH A 30 630 88 HOH HOH . H 4 HOH A 31 631 8 HOH HOH . H 4 HOH A 32 632 44 HOH HOH . H 4 HOH A 33 633 122 HOH HOH . H 4 HOH A 34 634 21 HOH HOH . H 4 HOH A 35 635 113 HOH HOH . H 4 HOH A 36 636 56 HOH HOH . H 4 HOH A 37 637 67 HOH HOH . H 4 HOH A 38 638 79 HOH HOH . H 4 HOH A 39 639 69 HOH HOH . H 4 HOH A 40 640 49 HOH HOH . H 4 HOH A 41 641 101 HOH HOH . H 4 HOH A 42 642 40 HOH HOH . H 4 HOH A 43 643 18 HOH HOH . H 4 HOH A 44 644 50 HOH HOH . H 4 HOH A 45 645 104 HOH HOH . H 4 HOH A 46 646 32 HOH HOH . H 4 HOH A 47 647 12 HOH HOH . H 4 HOH A 48 648 94 HOH HOH . H 4 HOH A 49 649 107 HOH HOH . H 4 HOH A 50 650 48 HOH HOH . H 4 HOH A 51 651 66 HOH HOH . H 4 HOH A 52 652 6 HOH HOH . H 4 HOH A 53 653 52 HOH HOH . H 4 HOH A 54 654 90 HOH HOH . H 4 HOH A 55 655 29 HOH HOH . H 4 HOH A 56 656 105 HOH HOH . H 4 HOH A 57 657 30 HOH HOH . H 4 HOH A 58 658 77 HOH HOH . H 4 HOH A 59 659 80 HOH HOH . H 4 HOH A 60 660 27 HOH HOH . H 4 HOH A 61 661 38 HOH HOH . H 4 HOH A 62 662 84 HOH HOH . H 4 HOH A 63 663 73 HOH HOH . H 4 HOH A 64 664 120 HOH HOH . H 4 HOH A 65 665 127 HOH HOH . I 4 HOH B 1 601 85 HOH HOH . I 4 HOH B 2 602 60 HOH HOH . I 4 HOH B 3 603 126 HOH HOH . I 4 HOH B 4 604 74 HOH HOH . I 4 HOH B 5 605 82 HOH HOH . I 4 HOH B 6 606 59 HOH HOH . I 4 HOH B 7 607 10 HOH HOH . I 4 HOH B 8 608 72 HOH HOH . I 4 HOH B 9 609 111 HOH HOH . I 4 HOH B 10 610 24 HOH HOH . I 4 HOH B 11 611 3 HOH HOH . I 4 HOH B 12 612 34 HOH HOH . I 4 HOH B 13 613 15 HOH HOH . I 4 HOH B 14 614 96 HOH HOH . I 4 HOH B 15 615 118 HOH HOH . I 4 HOH B 16 616 53 HOH HOH . I 4 HOH B 17 617 35 HOH HOH . I 4 HOH B 18 618 31 HOH HOH . I 4 HOH B 19 619 83 HOH HOH . I 4 HOH B 20 620 1 HOH HOH . I 4 HOH B 21 621 63 HOH HOH . I 4 HOH B 22 622 87 HOH HOH . I 4 HOH B 23 623 121 HOH HOH . I 4 HOH B 24 624 41 HOH HOH . I 4 HOH B 25 625 64 HOH HOH . I 4 HOH B 26 626 33 HOH HOH . I 4 HOH B 27 627 7 HOH HOH . I 4 HOH B 28 628 13 HOH HOH . I 4 HOH B 29 629 28 HOH HOH . I 4 HOH B 30 630 75 HOH HOH . I 4 HOH B 31 631 97 HOH HOH . I 4 HOH B 32 632 46 HOH HOH . I 4 HOH B 33 633 61 HOH HOH . I 4 HOH B 34 634 51 HOH HOH . I 4 HOH B 35 635 100 HOH HOH . I 4 HOH B 36 636 25 HOH HOH . I 4 HOH B 37 637 36 HOH HOH . I 4 HOH B 38 638 115 HOH HOH . I 4 HOH B 39 639 93 HOH HOH . I 4 HOH B 40 640 5 HOH HOH . I 4 HOH B 41 641 81 HOH HOH . I 4 HOH B 42 642 109 HOH HOH . I 4 HOH B 43 643 114 HOH HOH . I 4 HOH B 44 644 71 HOH HOH . I 4 HOH B 45 645 117 HOH HOH . I 4 HOH B 46 646 14 HOH HOH . I 4 HOH B 47 647 65 HOH HOH . I 4 HOH B 48 648 57 HOH HOH . I 4 HOH B 49 649 62 HOH HOH . I 4 HOH B 50 650 70 HOH HOH . I 4 HOH B 51 651 92 HOH HOH . I 4 HOH B 52 652 45 HOH HOH . I 4 HOH B 53 653 125 HOH HOH . I 4 HOH B 54 654 116 HOH HOH . I 4 HOH B 55 655 103 HOH HOH . I 4 HOH B 56 656 68 HOH HOH . I 4 HOH B 57 657 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 17.099 27.292 43.52 1 76.64 ? S DMS 502 A 1 HETATM 2 O O DMS . . . D 3 17.785 27.145 42.183 1 63.78 ? O DMS 502 A 1 HETATM 3 C C1 DMS . . . D 3 17.091 29.046 43.977 1 63.91 ? C1 DMS 502 A 1 HETATM 4 C C2 DMS . . . D 3 15.326 27.019 43.281 1 44.84 ? C2 DMS 502 A 1 HETATM 5 H H11 DMS . . . D 3 16.693 29.155 44.952 1 76.69 ? H11 DMS 502 A 1 HETATM 6 H H12 DMS . . . D 3 16.495 29.587 43.289 1 76.69 ? H12 DMS 502 A 1 HETATM 7 H H13 DMS . . . D 3 18.081 29.421 43.956 1 76.69 ? H13 DMS 502 A 1 HETATM 8 H H21 DMS . . . D 3 15.054 26.082 43.694 1 53.81 ? H21 DMS 502 A 1 HETATM 9 H H22 DMS . . . D 3 15.104 27.027 42.246 1 53.81 ? H22 DMS 502 A 1 HETATM 10 H H23 DMS . . . D 3 14.782 27.788 43.765 1 53.81 ? H23 DMS 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #